Research Article |
Corresponding author: Marc Stadler ( marc.stadler@t-online.de ) Academic editor: Andrew Miller
© 2023 Marjorie Cedeño-Sanchez, Esteban Charria-Girón, Christopher Lambert, J. Jennifer Luangsa-ard, Cony Decock, Raimo Franke, Mark Brönstrup, Marc Stadler.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Cedeño-Sanchez M, Charria-Girón E, Lambert C, Luangsa-ard JJ, Decock C, Franke R, Brönstrup M, Stadler M (2023) Segregation of the genus Parahypoxylon (Hypoxylaceae, Xylariales) from Hypoxylon by a polyphasic taxonomic approach. MycoKeys 95: 131-162. https://doi.org/10.3897/mycokeys.95.98125
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During a mycological survey of the Democratic Republic of the Congo, a fungal specimen that morphologically resembled the American species Hypoxylon papillatum was encountered. A polyphasic approach including morphological and chemotaxonomic together with a multigene phylogenetic study (ITS, LSU, tub2, and rpb2) of Hypoxylon spp. and representatives of related genera revealed that this strain represents a new species of the Hypoxylaceae. However, the multi-locus phylogenetic inference indicated that the new fungus clustered with H. papillatum in a separate clade from the other species of Hypoxylon. Studies by ultrahigh performance liquid chromatography coupled to diode array detection and ion mobility tandem mass spectrometry (UHPLC-DAD-IM-MS/MS) were carried out on the stromatal extracts. In particular, the MS/MS spectra of the major stromatal metabolites of these species indicated the production of hitherto unreported azaphilone pigments with a similar core scaffold to the cohaerin-type metabolites, which are exclusively found in the Hypoxylaceae. Based on these results, the new genus Parahypoxylon is introduced herein. Aside from P. papillatum, the genus also includes P. ruwenzoriense sp. nov., which clustered together with the type species within a basal clade of the Hypoxylaceae together with its sister genus Durotheca.
Ascomycota, metabolite annotation, one new genus, one new species, phylogeny, polythetic taxonomy, Xylariales
The genus Hypoxylon Bull. 1791 remains one of the largest in the Xylariales, even after a turbulent taxonomic history, during which its generic concept has changed drastically. Its early taxonomic history has been reviewed in great detail by
The first world monograph of Hypoxylon by
With the advent of molecular phylogenetic studies, and chemotaxonomy as an additional tool, the taxonomic concepts of Hypoxylon and other stromatic genera of the Xylariales have been further refined. The holomorphic concepts developed by Ju and Rogers, as well as other mycologists who put more emphasis on the anamorphic characters than on stromatal and ascospore morphology, have largely been confirmed.
Based on the above accomplishments,
Characteristic stromatal pigments and other secondary metabolites of Hypoxylon species. (+)-mitorubrin (1); (+)-6˝-hydroxymitorubrinol acetate (2); (+)-mitorubrinol acetate (3); (+)-6˝-hydroxymitorubrinol (4); (+)-mitorubrinol (5); sporothriolide (6); dihydroisosporothric acid (7); cohaerin E (8); 8-methoxy naphthol (9); 1,8-naphthol (10); hypoxylone (11).
The genus Hypoxylon in the current sense still appears heterogeneous and paraphyletic in the recently established phylogenies, also because its type species, H. fragiforme clustered in a relatively small clade comprising only a few species such as H. howeanum, H. ticinense and H. rickii (
Another species that was retained in Hypoxylon, even though the DNA sequences of the only available strain formed an aberrant clade in the phylogeny by
All scientific names of fungi are given without authorities or publication details, according to Index Fungorum (http://www.indexfungorum.org). Type and reference specimens were provided by Washington State University herbarium (
The microscopic characteristics of the teleomorph were carried out as described by
The DNA was extracted from pure cultures grown on plates with YM agar. Small amounts of mycelia were harvested after five days of growth and transferred to a 1.5 ml homogenization tube filled with six to eight Precellys Ceramic beads (1.4 mm, Bertin Technologies, Montigny-le-Bretonneux, France).
DNA extraction was performed using the commercially available Fungal gDNA Miniprep Kit EZ-10 spin column (NBS Biologicals, Cambridgeshire, UK) following the manufacturer’s instructions. The tub2 (partial β-tubulin) gene region was amplified using the primers T1 and T22 (
PCR reactions were performed by mixing template gDNA (2–3 µL), 12.5 µL JumpStart Taq Ready Mix (Sigma Aldrich, Deisenhofen, Germany), 0.5 µL of both forward and reverse primers (10 mM) and 8.5 to 9.5 μl of sterile filtered and sterilized water to a final volume of 25 µL. Amplification was achieved using a Mastercycler nexus Gradient (Eppendorf, Hamburg, Germany). Thermocycling for ITS commenced with an initial denaturation at 94 °C for 5 min followed by 34 cycles of denaturation (30 s at 94 °C), annealing (30 s at 52 °C), and elongation (1 min at 72 °C). The program concluded with a 10 min lasting elongation at 72 °C and reaction tubes were stored at 4 °C until further use. In the case of the other loci, the following steps were modified: LSU denaturation (1 min at 94 °C), annealing (1 min at 52 °C), and elongation (2 min at 72 °C); For tub2 the cycle repetitions were raised to 38, annealing (30 s at 47 °C) and elongation (2 min 30 s at 72 °C); for rpb2, the cycle repetitions were raised to 38, annealing (1 min at 54 °C) and elongation (1 min 30 s at 72 °C).
Sequences were analyzed and processed in Geneious 7.1.9 (
A second phylogenetic inference was carried out following a Bayesian approach using MrBayes 3.2.7a (
Strains used in the phylogenetic analyses, including the strain IDs, GenBank accession numbers, and the references where the sequence data have been originally generated. Type specimens are labeled with T (holotype), IT (isotype), PT (paratype) and ET (epitype).
Species | Strain number | GenBank Accession Number | Origin | References | |||
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ITS | LSU | rpb2 | tub2 | ||||
Annulohypoxylon annulatum | CBS 140775 | KY610418 | KY610418 | KY624263 | KX376353 | USA (ET) |
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Annulohypoxylon michelianum | CBS 119993 | KX376320 | KY610423 | KY624234 | KX271239 | Spain |
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Annulohypoxylon truncatum | CBS 140778 | KY610419 | KY610419 | KY624277 | KX376352 | USA (ET) |
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Daldinia bambusicola | CBS 122872 | KY610385 | KY610431 | KY624241 | AY951688 | Thailand (T) |
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Daldinia childiae | CBS 122881 | KU683757 | MH874773 | KU684290 | KU684129 | France (T) |
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Daldinia concentrica | CBS 113277 | AY616683 | KY610434 | KY624243 | KC977274 | Germany |
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Daldinia dennisii | CBS 114741 | JX658477 | KY610435 | KY624244 | KC977262 | Australia (T) |
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Daldinia eschscholtzii | MUCL 45435 | JX658484 | KY610437 | KY624246 | KC977266 | Benin |
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Daldinia petriniae | MUCL 49214 | AM749937 | KY610439 | KY624248 | KC977261 | Austria (ET) |
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Daldinia placentiformis | MUCL 47603 | AM749921 | KY610440 | KY624249 | KC977278 | Mexico |
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Daldinia vernicosa | CBS 119316 | KY610395 | KY610442 | KY624252 | KC977260 | Germany (ET) |
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Durotheca rogersii | YMJ 92031201 | EF026127 | JX507794 | EF025612 | Taiwan |
|
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Durotheca comedens | YMJ 90071615 | EF026128 | JX507793 | EF025613 | Taiwan (T) |
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Durotheca crateriformis | GMBC0205 | MH645426 | MH645425 | MH645427 | MH049441 | China (T) |
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Durotheca guizhouensis | GMBC0065 | MH645423 | MH645421 | MH645422 | MH049439 | China (T) |
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Durotheca rogersii | GMBC0204 | MH645433 | MH645434 | MH645435 | MH049449 | China |
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Graphostroma platystomum | CBS 270.87 | JX658535 | DQ836906 | KY624296 | HG934108 | France (T) |
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Hypomontagnella barbarensis | STMA 14081 | MK131720 | MK131718 | MK135891 | MK135893 | Argentina (T) |
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Hypomontagnella monticulosa | MUCL 54604 | KY610404 | KY610487 | KY624305 | KX271273 | French Guiana |
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Hypomontagnella submonticulosa | CBS 115280 | KC968923 | KY610457 | KY624226 | KC977267 | France |
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Hypoxylon addis | MUCL 52797 | KC968931 | ON954141 | OP251037 | KC977287 | Ethiopia (T) |
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Hypoxylon aveirense | MUM 19.40 | MN053021 | ON954142 | OP251028 | MN066636 | Portugal (T) |
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Hypoxylon baruense | UCH9545 | MN056428 | ON954143 | MK908142 | Panama (T) |
|
|
Hypoxylon canariense | MUCL 47224 | ON792787 | ON954140 | OP251029 | ON813073 | Spain, Canary Islands (PT) | This study. (Species described by |
Hypoxylon carneum | MUCL 54177 | KY610400 | KY610480 | KY624297 | KX271270 | France |
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Hypoxylon cercidicola | CBS 119009 | KC968908 | KY610444 | KY624254 | KC977263 | France |
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Hypoxylon chionostomum | STMA 14060 | KU604563 | ON954144 | OP251030 | ON813072 | Argentina |
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Hypoxylon chrysalidosporum | FCATAS2710 | OL467294 | OL615106 | OL584222 | OL584229 | China (T) |
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Hypoxylon crocopeplum | CBS 119004 | KC968907 | KY610445 | KY624255 | KC977268 | France |
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Hypoxylon cyclobalanopsidis | FCATAS2714 | OL467298 | OL615108 | OL584225 | OL584232 | China (T) |
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Hypoxylon erythrostroma | MUCL 53759 | KC968910 | ON954154 | OP251031 | KC977296 | Martinique |
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Hypoxylon eurasiaticum | MUCL 57720 | MW367851 | MW373852 | MW373861 | Iran (T) |
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Hypoxylon fendleri | MUCL 54792 | KF234421 | KY610481 | KY624298 | KF300547 | French Guiana |
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Hypoxylon ferrugineum | CBS 141259 | KX090079 | KX090080 | Austria |
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Hypoxylon fragiforme | MUCL 51264 | KC477229 | KM186295 | MK887342 | KX271282 | Germany (ET) |
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Hypoxylon fuscoides | MUCL 52670 | ON792789 | ON954145 | OP251038 | ON813076 | France (T) | This study. (Species described by |
Hypoxylon fuscum | CBS 113049 | KY610401 | KY610482 | KY624299 | KX271271 | Germany (ET) |
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Hypoxylon gibriacense | MUCL 52698 | KC968930 | ON954146 | OP251026 | ON813074 | France (T) |
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Hypoxylon griseobrunneum | CBS 331.73 | KY610402 | KY610483 | KY624300 | KC977303 | India (T) |
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Hypoxylon guilanense | MUCL 57726 | MT214997 | MT214992 | MT212235 | MT212239 | Iran (T) |
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Hypoxylon haematostroma | MUCL 53301 | KC968911 | KY610484 | KY624301 | KC977291 | Martinique (ET) |
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Hypoxylon hainanense | FCATAS2712 | OL467296 | OL616132 | OL584224 | OL584231 | China (T) |
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Hypoxylon hinnuleum | ATCC 36255, MUCL 3621 | MK287537 | MK287549 | MK287562 | MK287575 | USA (T) |
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Hypoxylon howeanum | MUCL 47599 | AM749928 | KY610448 | KY624258 | KC977277 | Germany |
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Hypoxylon hypomiltum | MUCL 51845 | KY610403 | KY610449 | KY624302 | KX271249 | Guadeloupe |
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Hypoxylon invadens | MUCL 51475 | MT809133 | MT809132 | MT813037 | MT813038 | France (T) |
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Hypoxylon investiens | CBS 118183 | KC968925 | KY610450 | KY624259 | KC977270 | Malaysia |
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Hypoxylon isabellinum | MUCL 53308 | KC968935 | ON954155 | OP251032 | KC977295 | Martinique (T) |
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Hypoxylon laschii | MUCL 52796 | JX658525 | ON954147 | OP251027 | ON813075 | France |
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Hypoxylon lateripigmentum | MUCL 53304 | KC968933 | KY610486 | KY624304 | KC977290 | Martinique (T) |
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Hypoxylon lechatii | MUCL 54609 | KF923407 | ON954148 | OP251033 | KF923405 | French Guiana |
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Hypoxylon lenormandii | CBS 119003 | KC968943 | KY610452 | KY624261 | KC977273 | Ecuador |
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Hypoxylon lienhwacheense | MFLUCC 14-1231 | KU604558 | MK287550 | MK287563 | KU159522 | Thailand |
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Hypoxylon lividipigmentum | STMA14045 | ON792788 | ON954149 | ON813077 | Argentina | This study | |
Hypoxylon lividipigmentum | BCRC 34077 | JN979433 | AY951735 | Mexico (IT) |
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Hypoxylon macrocarpum | CBS119012 | ON792785 | ON954151 | OP251034 | ON813071 | Germany | This study |
Hypoxylon munkii | MUCL 53315 | KC968912 | ON954153 | OP251035 | KC977294 | Martinique |
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Hypoxylon musceum | MUCL 53765 | KC968926 | KY610488 | KY624306 | KC977280 | Guadeloupe |
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Hypoxylon ochraceum | MUCL 54625 | KC968937 | KY624271 | KC977300 | Martinique (ET) |
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Hypoxylon olivaceopigmentum | DSM 107924 | MK287530 | MK287542 | MK287555 | MK287568 | USA (T) |
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Hypoxylon perforatum | CBS115281 | KY610391 | KY610455 | KY624224 | KX271250 | France |
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Hypoxylon petriniae | CBS 114746 | KY610405 | KY610491 | KY624279 | KX271274 | France (T) |
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Hypoxylon pilgerianum | STMA 13455 | KY610412 | KY610412 | KY624308 | KY624315 | Martinique |
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Hypoxylon porphyreum | CBS 119022 | KC968921 | KY610456 | KY624225 | KC977264 | France |
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Hypoxylon pseudofuscum | DSM112038 | MW367857 | MW367848 | MW373858 | MW373867 | Germany (T) |
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Hypoxylon pulicicidum | CBS 122622 | JX183075 | KY610492 | KY624280 | JX183072 | Martinique (T) |
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Hypoxylon rickii | MUCL 53309 | KC968932 | KY610416 | KY624281 | KC977288 | Martinique (ET) |
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Hypoxylon rubiginosum | MUCL 52887 | KC477232 | KY610469 | KY624266 | KY624311 | Germany (ET) |
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Hypoxylon samuelsii | MUCL 51843 | KC968916 | KY610466 | KY624269 | KC977286 | Guadeloupe (ET) |
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Hypoxylon sporistriatatunicum | MN056426 | ON954150 | OP251036 | MK908140 | Panama (T) |
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Hypoxylon subticinense | MUCL 53752 | KC968913 | ON954152 | KC977297 | French Guiana |
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Hypoxylon texense | DSM 107933 | MK287536 | MK287548 | MK287561 | MK287574 | USA (T) |
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Hypoxylon ticinense | CBS 115271 | JQ009317 | KY610471 | KY624272 | AY951757 | France |
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Hypoxylon trugodes | MUCL 54794 | KF234422 | KY610493 | KY624282 | KF300548 | Sri Lanka (ET) |
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Hypoxylon vogesiacum | CBS 115273 | KC968920 | KY610417 | KY624283 | KX271275 | France |
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Hypoxylon wuzhishanense | FCATAS2708 | OL467292 | OL615104 | OL584220 | OL584227 | China (T) |
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Jackrogersella cohaerens | CBS 119126 | KY610396 | KY610497 | KY624270 | KY624314 | Germany |
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Jackrogersella multiformis | CBS 119016 | KC477234 | KY610473 | KY624290 | KX271262 | Germany (ET) |
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Natonodosa speciosa | CLM-RV86 | MF380435 | MF380435 | MH745150 | Mexico (T) |
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Parahypoxylon papillatum comb. nov. | ATCC 58729 | KC968919 | KY610454 | KY624223 | KC977258 | USA (T) |
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Parahypoxylon ruwenzoriense sp. nov. | MUCL51392 | ON792786 | ON954156 | OP251039 | ON813078 | D. R. Congo (T) | This study |
Pyrenopolyporus hunteri | MUCL 52673 | KY610421 | KY610472 | KY624309 | KU159530 | Ivory Coast (ET) |
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Pyrenopolyporus laminosus | MUCL 53305 | KC968934 | KY610485 | KY624303 | KC977292 | Martinique (T) |
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Pyrenopolyporus nicaraguense | CBS 117739 | AM749922 | KY610489 | KY624307 | KC977272 | Burkina_Faso |
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Rhopalostroma angolense | CBS 126414 | KY610420 | KY610459 | KY624228 | KX271277 | Ivory Coast |
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Rostrohypoxylon terebratum | CBS 119137 | DQ631943 | DQ840069 | DQ631954 | DQ840097 | Thailand (T) | Tang et al. (2007), |
Ruwenzoria pseudoannulata | MUCL 51394 | KY610406 | KY610494 | KY624286 | KX271278 | D. R. Congo (T) |
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Thamnomyces dendroidea | CBS 123578 | FN428831 | KY610467 | KY624232 | KY624313 | French Guiana (T) |
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Xylaria arbuscula | CBS 126415 | KY610394 | KY610463 | KY624287 | KX271257 | Germany |
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Xylaria hypoxylon | CBS 122620 | KY610407 | KY610495 | KY624231 | KX271279 | Sweden (ET) |
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The secondary metabolites were extracted using a small piece of the stromata (approx. 1 mm3). Each piece was placed in 1.5 ml reaction tubes, covered with 1000 µl of methanol and placed for 30 min at 40 °C in an ultrasonic bath. The tubes were centrifuged at 14 000 rpm for 10 min. The methanol extract was separated from the remaining stromata, which was extracted again under the same procedure. Finally, both organic phases were combined and dried under nitrogen. Each sample was analyzed at a concentration of 450 µg/mL on an ultrahigh performance liquid chromatography system (Dionex Ultimate3000RS, Thermo Scientific, Dreieich, Germany), using a C18 column (Kinetex 1.7 µm, 2.1 × 150 mm, 100 Å; Phenomenex, Aschaffenburg, Germany) with a sample injection volume of 2 µL. The mobile phase consisted of A (H2O + 0.1% formic acid) and B (ACN + 0.1% formic acid) with a constant flow rate of 0.3 mL/min. The gradient began with 1% B for 0.5 min, increasing to 5% B in 1 min, then to 100% B in 19 min and holding at 100% B for 5 min. The temperature of the column was kept at 40 °C and UV-Vis data were recorded with a DAD at 190–600 nm.
MS spectra were collected using a trapped ion mobility quadrupole time-of-flight mass spectrometer (timsTOF Pro, Bruker Daltonics, Bremen, Germany) with the following parameters: tims ramp time 100 ms, spectra rate 9.52 Hz, PASEF on, cycle time 320 ms, MS/MS scans 2, scan range (m/z, 100–1800 Da; 1/k0, 0.55–2.0 V∙s/cm2). For the stromatal extracts and the standards ESI mass spectra were acquired in positive ion mode. Raw data were pre-processed with MetaboScape 2022 (Bruker Daltonics, Bremen, Germany) in the retention time range of 0.5 to 25 min. The obtained features were dereplicated against our in-house database comprising MS/MS spectra of standards from characteristic secondary metabolites of hypoxylaceous species (e.g. azaphilones, asterriquinones, binaphthalenes, cytochalasins, macrolides and sesquiterpenoids) in MetaboScape. A molecular network was created with the Feature-Based Molecular Networking (FBMN) (
The final data matrix for the molecular phylogenetic analysis (Fig.
Inferred molecular phylogenetic maximum Likelihood (lLn = -122825.7921) tree of selected Hypoxylaceae, Graphostromataceae and Xylariaceae sequences. The analysis was calculated by using IQ-Tree with posterior probability support calculated from Bayesian inference methodology and support values generated from 1000 bootstrap replicates using a multigene alignment (ITS, LSU, tub2 and rpb2). The tree was rooted with Xylaria hypoxylon CBS 122620, X. arbuscula CBS 126415 (Xylariaceae) and Graphostroma platystomum CBS 27087 (Graphostromataceae). Type material is highlighted in bold letters. Bayesian posterior probability scores ≥ 0.95 / Bootstrap support values ≥ 70 are indicated along branches.
The inference of phylogenetic relationship using a Maximum-Likelihood and Bayesian approach yielded two different, discongruent topologies. An approximate unbiased (AU) topology test implemented in IQTree indicated that the tree resulting from Bayesian inference received a significantly (p < 0.05) lower maximum likelihood score, suggesting its rejection. Hence, we included support values of the approximate Bayes test implemented in IQTree to access posterior probability support values of the inferred phylogenetic tree. The combined rooted phylogenetic tree showed a clade consisting of the core members of the Hypoxylaceae, such as Hypoxylon, Daldinia, Pyrenopolyporus, Hypomontagnella, Jackrogersella, Rostrohypoxylon, Thamnomyces and Ruwenzoria with medium BS and high PP support (1/90), which was placed in a sister position to a clade consisting of members of Parahypoxylon gen. nov., and Durotheca (Hypoxylaceae) at the base of the tree with strong support (1/100). The genus Hypoxylon could be confirmed as paraphyletic, as has been described already by
French Guiana, Cayenne, Leprieur, C. 1176, dead wood (PC, holotype; FH, isotype of H. monticulosum).
(designated here). France. French Guyana, Sinnamary, Paracou, Amazonian rain forest, bark of unknown tree, June 2012, leg J. Fournier (LIP, ex-epitype culture MUCL 54604). GenBank acc. nos for DNA sequences: KY610404 and KJ810556 (ITS), KY610487 (LSU), KY624305 (rpb2), KX271273 (tub2); MT889334 (sporothriolide gene cluster published by
MBT no: 10010042.
The strain designated here as epitype was used by
Refers to the morphological similarity to Hypoxylon, from which the genus is phylogenetically distinct.
Differs from the genus Durotheca by the presence of greenish KOH-extractable pigments and by having an amyloid ascal apical apparatus. Differs from the genus Hypoxylon by containing yet unknown cohaerin-type azaphilones and by its basal position in the molecular phylogenetic inference using am ITS, LSU, rpb2 and tub2 matrix.
Hypoxylon papillatum Ellis & Everh. in Smith, Bull. Lab. Nat. Hist. Iowa State Univ. 2: 408 (1893). Syn.
USA. Ohio, Delaware, 21 Jul 1893, A. Commons 2160, rotten wood of Carya (
USA. West Virginia, Mason Co., Bruce’s Chapel, 18 Aug 1983, wood of Acer, J.D. Rogers (
MBT no: 10011515.
Stromata superficial, effused-pulvinate to plane, with inconspicuous to conspicuous perithecial mounds, up to 12.5 cm long × up to 4 cm broad × 1.8–4.0 mm thick; surface Honey (64) to Isabelline (65), Isabelline (65) to Gray Olivaceous (107), or Isabelline (65) to Olivaceous (48); blackish granules immediately beneath surface and between perithecia, with KOH-extractable pigments Isabelline (65); the tissue below the perithecial layer conspicuous, black, 1.0–2.5 mm thick. Perithecia long-tubular, 0.3–0.4 mm diam × 0.8–1.5 mm high. Ostioles umbilicate. Asci with amyloid, discoid apical apparatus, 1–2 µm high × 3.5 µm wide, stipe up 137–180 µm long × 8–10 µm broad, the spore-bearing parts 93–110 µm long, the stipes 30–80 µm long. Ascospores brown to dark brown, unicellular, ellipsoid, nearly equilateral, with broadly to narrowly rounded ends, 12.0–18.5 × 6.5–9.0 µm, with straight germ slit spore-length; perispore indehiscent in 10% KOH; epispore smooth.
Parahypoxylon papillatum comb. nov. A stroma B ostioles C KOH extractable stromatal pigments D perithecia (cross section) E ascospores with straight germ slits F amyloid apical apparatus in a mature ascus treated with Melzer’s reagent G amyloid apical apparatus in an immature ascus treated with Melzer’s reagent. Scale bars: 1 cm (A); 10 μm (E–F); 10 μm (G).
Colonies on MEA, OA, and YM covering a 9 cm Petri plate in 2 weeks, with white, flat, mycelium, margins filamentous. Reverse at first white, becoming yellowish at the center. The anamorph has been described by
Stromata contain BNT and cohaerin type azaphilones according to the MS/MS analysis.
We were not only able to confirm the morphometric results of
USA. Kansas, on decorticated wood, Feb 1884, F.W. Cragin 257 (NY00830462, syntype of H. papillatum); Pennsylvania, Allegheny Co., on dead wood, 14 Aug 1941, Henry, L.K. 4885 (
Democratic Republic Of The Congo. North Kivu: Mt. Ruwenzori, about 00°33.961'N, 29°81.795'E, between 2,138 and 2,400 m alt., 3–5 Feb 2008, tropical mountain forest, C. Decock (MUCL 51392, ex-holotype culture MUCL 51392).
Named after the Ruwenzori Mountains, where the species was collected.
Stromata superficial, incomplete, effused-pulvinate, 60 mm long × 40 mm broad × 3–5 mm thick; surface Fawn (87), with inconspicuous perithecial mounds, with a black, shiny hard crust 100–150 µm thick above perithecia, without visible granules, with KOH-extractable pigments Hazel (88); the pruina hyphae turn violet in KOH; the tissue below the perithecia 2–4 mm thick, vertically fibrose, dark grey. Perithecia tubular, 0.90–1.50 mm high × 0.2–0.3 mm diam (n=18). Ostioles umbilicate, surrounded by a white substance. Asci cylindrical, 8-spored, the spore-bearing parts 82–105 µm long × 5.5–6.0 µm broad, the stipes 38–130 µm long, with amyloid, discoid apical ring 0.7–2.0 µm high × 2.5–3.5 µm (n=21) broad. Ascospores smooth, unicellular, brown to dark brown, narrowly ellipsoid, nearly equilateral with narrowly rounded ends, 10.5–13.8 × 4.0–5.6 µm (n=40), with a faint, straight germ slit; perispore indehiscent in 10% KOH.
Parahypoxylon ruwenzoriense sp. nov. (MUCL 51392). A stroma B ostioles with white ring C KOH extractable stromatal pigments D perithecia (cross section) E ascospores F amyloid apical apparatus (blueing in Melzer’s reagent) indicated by arrowheads G asci. Scale bars: 1 cm (A); 2 mm (D); 10 μm (E, F); 50 μm (G).
Colonies on MEA, OA, and YM covering a 9 cm Petri plate in 2 weeks, with mycelium white at first, flat to raised in some zones, to becoming greenish in the center. Reverse at first yellowish, to become orange with a black spot at the center. Conidiophores not produced.
Stromata contain BNT and cohaerin type azaphilones according to the MS/MS analysis.
P. ruwenzoriense is phylogenetically close to P. papillatum but differs by its KOH-extractable pigments Hazel (88) and by smaller ascospores.
As explained in the Experimental section, stromata of five herbarium specimens assignable to Parahypoxylon were extracted and analysed by UHPLC-DAD-IM-MS/MS. The raw data sets were pre-processed and the obtained feature table dereplicated using high resolution m/z, MS/MS spectra, retention time, CCS value, and UV/Vis spectra and reference data obtained from our in-house library of common secondary metabolites of the Hypoxylaceae (data not shown).
From the base peak chromatograms (BPC) of the stromatal extracts of the studied specimens, six major peaks could be distinguished (Fig.
Base peak chromatograms (BPCs) from UHPLC-MS analysis of the stromatal extracts of P. papillatum (
A Reference MS/MS spectra of cohaerin E, cohaerin H, and minutellin A standards, and the six major azaphilones identified in the UHPLC-MS chromatograms of stromatal extracts from the Parahypoxylon spp. B azaphilone cluster in a molecular network created from the Parahypoxylon spp. stromatal extracts and MS/MS spectra from selected standards C UV/Vis profile comparison from compound 1–6, cohaerin E, cohaerin H, and minutellin A.
Cohaerin-type azaphilones present as well a distinct MS fragmentation pattern. In MS/MS experiments, cohaerin E generated fragment ions at 393.207 Da, 323.092 Da, 281.085 Da, and 253.086 Da, while minutellin A generated fragment ions at 397.201 Da, 341.102 Da, 299.091 Da, and 271.097 Da. The most abundant fragments were annotated using the CFM-ID 4.0 peak assignment module. In both cases, the most abundant fragments were traced down to the azaphilone backbone (Fig.
The genus Hypoxylon in the current taxonomic concept has frequently been shown to be paraphyletic (
The investigation of the stromatal metabolite extracts by HPLC has proven to be a valuable resource to achieve a more natural classification of hypoxylaceous taxa (
However, in many occasions and applications, the isolation and structure elucidation of yet unidentified compounds is not possible, such as in the example of isolating pigments from natural sources, as is the case in the genus Hypoxylon. Even very old specimens have been reported to harbor intact secondary metabolites, as has been described for fossilized stromata assigned to Hypoxylon fragiforme in a study of archeological samples by
An MS/MS analysis of the major metabolites suggested the presence of six unknown compounds assignable to the azaphilones related to the cohaerin family, which have been predicted to harbor a smaller carbon skeleton than the known cohaerins, and which still conserve some of the distinctive fragmentation patterns of these secondary metabolites (Suppl. material
In this context, the stromatal metabolite profile of the specimens of P. papillatum and the new species P. ruwenzoriense are rather unique, even though it exhibits related chemotaxonomic features more likely to be found in the Hypoxylaceae. The cohaerin type azaphilones (which include also the multiformins and minutellins) have first been reported by
In the future, it will become easier to tell if the genetic information for the successful biosynthesis of such secondary metabolites is present in the genomes of the respective organisms even if the products cannot be detected. Chemotaxonomic evidence can also be used to segregate the new genus from the species that are located in neighboring basal clades in the current phylogeny (i.e., Hypoxylon aeruginosum and Durotheca spp.). Interestingly, these species neither contain azaphilones nor binaphthalenes, with H. aeruginosum and the related genus Chlorostroma reported to have lepraric acid derivatives as major stromatal metabolites (
The integration of state-of-the-art metabolomic-based tools in chemotaxonomic surveys will further accelerate and assist the systematic study of paraphyletic taxa within the concept of polyphasic taxonomy as herein demonstrated for the introduction of Parahypoxylon.
This work was funded by the DFG (Deutsche Forschungsgemeinschaft) priority program “Taxon-Omics: New Approaches for Discovering and Naming Biodiversity” (SPP 1991). It also benefited from the European Union’s H2020 Research and Innovation Staff Exchange program (RISE) [Grant No. 101008129: MYCOBIOMICS], granted to J.J. Luangsa-ard and M. Stadler. MCS gratefully acknowledges a PhD stipend from The National Secretariat of Science, Technology and Innovation of the Republic of Panama (SENACYT) and the Institute for the Development of Human Resources (IFARHU). E. Charria-Girón was funded by the HZI POF IV Cooperativity and Creativity Project Call. Additionally, we gratefully acknowledge support from the curators of the international herbaria, above all Lisa A Castlebury (
Supplementary information
Data type: Alignments and MS raw data (PDF file)