Research Article |
Corresponding author: Cheng-Lin Hou ( chenglin-hou@cnu.edu.cn ) Academic editor: Nattawut Boonyuen
© 2022 Lan Zhuo, Mei-Jun Guo, Qiu-Tong Wang, Hao Zhou, Meike Piepenbring, Cheng-Lin Hou.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Zhuo L, Guo M-J, Wang Q-T, Zhou H, Piepenbring M, Hou C-L (2022) A new study of Nagrajomyces: with two new species proposed and taxonomic status inferred by phylogenetic methods. MycoKeys 93: 131-148. https://doi.org/10.3897/mycokeys.93.93712
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Nagrajomyces (incertae sedis, Ascomycota) is a monotypic genus with a previously unknown systematic position. In this report, two new species are proposed, Nagrajomyces fusiformis and Nagrajomyces laojunshanensis. These new taxa are proposed based on morphological characteristics evident via light microscopy and molecular data. Multi-locus phylogenetic analyses (ITS rDNA, nrLSU rDNA, RPB2, and TEF1-α) show that specimens recently collected in Yunnan Province, China are closely related to Gnomoniaceae. Both new species and known species were discovered repeatedly in their asexual developmental form exclusively on twigs of Rhododendron spp. (Ericaceae). This indicates a host specificity of Nagrajomyces spp. for species of Rhododendron.
host specificity, Nagrajomyces, new taxa, phylogeny
Gnomoniaceae is a distinct family of Diaporthales, established by
Many species of Gnomoniaceae are important plant pathogens, such as Apiognomonia errabunda (Roberge ex Desm.) Höhn, which causes oak anthracnose (
Nagrajomyces (incertae sedis, Ascomycota) is a monotypic genus based on N. dictyosporus Mel’nik (
In the present study, two new species were discovered on twigs of Rhododendron spp. in Yunnan and assigned to the genus Nagrajomyces based on morphological characteristics, habitat, and host. Phylogenetic analysis revealed that the proposed Nagrajomyces species belong to Gnomoniaceae.
Fieldwork for the discovery of fungi was conducted during June 2021 in Yunnan Province, China. Fresh pycnidia were repeatedly discovered and collected on twigs of Rhododendron spp. Twigs with conidiomata were packed in paper bags and transported to the laboratory for morphological tests. Conidiomata were cut off in the laboratory using a razor blade, wrapped in paper packets, disinfected with 75% ethanol for 10 s, then 10% sodium hypochlorite for 2 min 30 s, and rinsed with distilled water three times. After absorbing the water with sterile filter paper, the conidiomata were transferred to potato dextrose agar (PDA) plates (
Conidiomata were photographed and cut by hand using a razor blade under a Nikon SMZ-1000 stereomicroscope (Japan). Morphological characteristics of conidiomata, conidiophores, and conidia were photographed and measured with an Olympus EX-51 upright microscope (Japan), and for each structure at least 20 measurements were made. Color values were taken from ColorHexa (https://www.colorhexa.com/).
Genomic DNA was extracted from specimens and cultures via the M5 Plant Genomic DNA Kit (Mei5 Biotechnology Co., Ltd., China) in accordance with the manufacturer’s instructions. Table
Gene | Primer pairs | Reference | Amplification conditions |
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ITS rDNA | ITS1F/ITS4 |
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LSU rDNA | LR0R/LR5 |
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TEF1-α | EF1-728F/EF1-986R |
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RPB2 | fRPB2-5F/fRPB2-7cR |
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Sequences used in phylogenetic analyses. References to sequences generated in the present study are emphasized in bold.
Taxa | Voucher | ITS rDNA | LSU rDNA | RPB2 | TEF1-α | References |
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Alnecium auctum | CBS 124263 | KF570154 | KF570154 | KF570170 | KF570200 |
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Ambarignomonia petiolorum | CBS 116866 | EU199193 | AY818963 | EU199151 | – |
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Ambarignomonia petiolorum | CBS 121227 | EU254748 | EU255070 | EU219307 | EU221898 |
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Amphiporthe tiliae | CBS 119289 | EU199178 | EU199122 | EU199137 | – |
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Apiognomonia errabunda | AR 2813 | DQ313525 | – | DQ862014 | DQ313565 |
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Apiognomonia veneta | MFLUCC 16-1193 | MF190114 | MF190056 | – | – |
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Apioplagiostoma populi | 858501 | KP637024 | – | – | – |
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Apiosporopsis carpinea | CBS 771.79 | – | AF277130 | – | – |
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Apiosporopsis sp. | Masuya 11Af2-1 | – | AB669034 | – | – |
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Asteroma alneum | CBS 109840 | EU167609 | EU167609 | – | – |
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Asteroma sp. | Masuya 8Ah9-1 | – | AB669035 | – | – |
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Cryptodiaporthe acerina | AR 3822 | EU254755 | EU255075 | EU219253 | EU221879 |
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Cryptodiaporthe aubertii | CBS 114196 | KX929767 | KX929803 | KX929838 | KX929732 |
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Cryptosporella hypodermia | CBS 116866 | EU199181 | AF408346 | EU199140 | – |
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Ditopella biseptata | MFLU 15-2661 | MF190147 | MF190091 | MF377616 | – |
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Ditopella ditopa | CBS 109748 | DQ323526 | EU199126 | EU199145 | – |
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Ditopellopsis sp. | CBS 121471 | EU254763 | EU255088 | EU219254 | EU221936 |
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Flavignomonia rhoigena | CFCC 53118 | MK432674 | MK429917 | MK578102 | – |
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Flavignomonia rhoigena | CFCC 53119 | MK432675 | MK429918 | MK578103 | – |
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Gnomonia gnomon | CBS 199.53 | DQ491518 | AF408361 | EU219295 | EU221885 |
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Gnomonia gnomon | CBS 829.79 | AY818957 | AY818964 | – | EU221905 |
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Gnomoniella microspora | BPI 877571 | EU254765 | – | – | – |
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Gnomoniopsis alderdunensis | CBS 125680 | GU320825 | – | – | – |
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Gnomoniopsis chamaemori | CBS 803.79 | EU254808 | EU255107 | – | – |
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Gnomoniopsis racemula | AR 3892 | EU254841 | EU255122 | EU219241 | EU221889 |
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Juglanconis juglandina | WU 35960 | KY427145 | KY427145 | KY427195 | KY427214 |
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Juglanconis oblonga | TFM FPH 2623 | KY427153 | KY427153 | KY427203 | KY427222 |
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Mamianiella coryli | BPI 877578 | EU254862 | – | – | – |
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Marsupiomyces epidermoidea | MFLU 15-2921 | – | MF190058 | – | – |
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Marsupiomyces quercina | MFLUCC 13-0664 | MF190116 | MF190061 | – | – |
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Melanconis marginalis | BPI 748234 | – | – | EU219299 | EU221886 |
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Melanconis marginalis | BPI 748446 | EU199197 | AF408373 | EU219301 | EU221991 |
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Neognomoniopsis quercina | CBS 145575 | MK876399 | MK876440 | – | – |
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Nagrajomyces fusiformis |
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OP473599 | OP473595 | OP484756 | OP484760 | This study |
Nagrajomyces fusiformis |
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OP473602 | OP473598 | – | OP484763 | This study |
Nagrajomyces laojunshanensis | CFCC 58177 | OP456161 | OP473594 | OP484755 | OP484759 | This study |
Nagrajomyces laojunshanensis |
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OP473600 | OP473596 | OP484757 | OP484761 | This study |
Nagrajomyces laojunshanensis |
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OP473601 | OP473597 | OP484758 | OP484762 | This study |
Occultocarpon ailaoshanense | LCM 524.01 | JF779849 | JF779853 | JF779856 | – |
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Occultocarpon ailaoshanense | LCM 522.01 | JF779848 | JF779852 | JF779857 | JF779862 |
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Ophiognomonia melanostyla | LCM 389.01 | JF779850 | JF779854 | JF779858 | – |
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Ophiognomonia vasiljevae | AR 4298 | EU254977 | EU255162 | EU219331 | EU221999 |
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Phragmoporthe conformis | AR 3632 | – | AF408377 | – | – |
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Plagiostoma aesculi | AR 3640 | EU254994 | EU255164 | EU219269 | – |
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Plagiostoma rhododendri | CBS 847.79 | EU255044 | EU255187 | EU219272 | – |
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Pleuroceras oregonense | AR 4333 | EU255060 | EU255196 | EU219313 | EU221931 |
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Pleuroceras pleurostylum | CBS 906.79 | EU255061 | EU255197 | EU219311 | EU221962 |
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Sirococcus conigenus | BPI 871248 | EU199201 | EU199134 | EU199157 | – |
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Sirococcus piceicola | BPI 871166 | EU199202 | EU199135 | EU199158 | – |
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Sirococcus tsugae | BPI 871167 | EU199203 | EU199136 | EU199159 | – |
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Sirococcus tsugae | AR 4010 | EF512478 | EU255207 | EU219289 | EU221928 |
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Tenuignomonia styracis | BPI 892786 | – | LC379289 | LC379295 | LC379283 |
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Tenuignomonia styracis | BPI 892785 | – | LC379288 | LC379294 | LC379282 |
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Valsalnicola oxystoma | AR 5137 | JX519561 | – | – | – |
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Valsalnicola oxystoma | AR 4833 | JX519559 | JX519563 | – | – |
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Multi-locus phylogenetic analyses of species of Gnomoniaceae (Diaporthales) include sequences of 51 ingroup taxa and sequences of an outgroup formed by Apiosporopsis carpinea, Apiosporopsis sp., Juglanconis juglandina, J. oblonga, and Melanconis marginalis (Fig.
Phylogenetic tree based on an ML analysis of combined ITS rDNA, nrLSU rDNA, RPB2, and TEF1-α sequences of species of Gnomoniaceae. Bootstrap support values for RAxML and maximum parsimony above 50% and Bayesian posterior probability values above 0.95 are shown at the nodes. The tree is rooted with sequences of Apiosporopsis carpinea, Apiosporopsis sp., Juglanconis juglandina, J. oblonga, and Melanconis marginalis. References to new sequences are in bold, and the names of the two new species are highlighted by colors.
The topology of the phylogenetic tree obtained in the current study was similar to the topology presented by
The epithet fusiformis refers to fusoid conidia.
China, Yunnan province, Lijiang, Yulong, 26°40'55"N, 99°54'01"E, alt. 2762 m, on dying twigs of Rhododendron vellereum Hutch. ex Tagg., 20 June 2021, coll. C.L. Hou, M.J. Guo, H. Zhou (holotype
This new species differs from N. dictyosporus and N. laojunshanensis by fusoid to elongate-fusoid conidia with pointed ends, usually 1-septate and smaller.
Micrographs of Nagrajomyces fusiformis (holotype
Conidiomata
solitary, pycnidial, irregularly plurilocular, subepidermal in origin, immersed at first, then becoming erumpent through the periderm of the host, 545–554 μm diameter, 520–546 μm high, peridium dark brown, 47.0–67.5 μm thick. Conidiophores ampulliform, smooth, hyaline, multiguttulate, 12–29 × 2.0–3.5 μm (x̄ = 19 × 3 μm, n = 20). Conidia fusoid to elongate-fusoid, 1-septate, cells equal, smooth, hyaline to pale brown, 13.5–19.0 × 3–4 μm (x̄ = 16.5 × 3.5 μm, n = 20), with a whip‑like appendage at the tip of each conidium, 30–77 μm (x̄ = 51 μm, n = 20) in length (Fig.
China, Yunnan Province, Lijiang, Laojunshan, 26°37'56"N, 99°43'30"E, alt. 3873 m, on dying twigs of Rhododendron vellereum, 20 June 2021, coll. C.L. Hou, M.J. Guo, H. Zhou (
Nagragomyces fusiformis differs from other species of Nagrajomyces by narrower and 1-septate conidia.
The epithet laojunshanensis refers to the location where the type specimen was collected.
China, Yunnan Province, Lijiang, Laojunshan, 26°39'44"N, 99°46'58"E, alt. 2910 m, on living twigs of Rhododendron cinnabarinum Hook. f., 20 June 2021, coll. C.L. Hou, M.J. Guo, H. Zhou (holotype
This new species differs from N. fusiformis by conidia that are elongate-elliptical, blunter at both ends, and usually 3-septate and larger. Nagrajomyces laojunshanensis differs from N. dictyosporus by conidiomata that are unilocular and without stalks.
Conidiomata solitary, pycnidial, unilocular, subglobose to ellipsoidal, subepidermal in origin, immersed at first, then becoming erumpent, 218–406 μm wide, 188–275 μm high, peridia black, 37–43 μm thick, opening irregularly in the upper part, with faint yellow content. Conidiophores ampulliform, smooth, hyaline, multiguttulate, 16.0–25.5 × 2–4 μm (x̄ = 21 × 3 μm, n = 20). Conidia elongate-elliptical, 1–3-septate, mostly 3-septate, smooth, hyaline, 18–23 × 5.5–7.0 μm (x̄ = 19.5 × 6.5 μm, n = 20), with a long, whip-like appendage at the tip of each conidium, 70–200 μm (x̄ = 143.5 μm, n = 20) in length. Sexual morph not observed.
Cultures (ex-type CFCC 58177) on PDA 8 cm diameter after 1 month, with irregular margins, sparse aerial mycelium, colonies with whitish margins, with center turning black olive (#3b3c36) with increasing age. On MEA, 5.7 cm diameter after 1 month, with irregular margins, colonies with beaver (#9f8170) -colored margins, with center turning black olive (#3b3c36) with increasing age. Conidia not observed.
China, Yunnan province, Kunming, Luquan, Jiaozixueshan, 26°05'04"N, 102°50'54"E, alt. 3823 m, on living twigs of Rhododendron cinnabarinum Hook. f., 23 June 2021, coll. C.L. Hou, M.J. Guo, H. Zhou, (
Nagrajomyces laojunshanensis differs from N. dictyosporus by conidia that are colorless and conidiomata that are without stalks. Nagrajomyces laojunshanensis differs from N. fusiformis by elongate-elliptical conidia with blunter ends, which are longer (18–23 μm vs. 13–19 μm) and wider (5.7–7.0 μm vs. 2.8–3.7 μm). Conidia of N. laojunshanensis are mostly 3-septate, whereas those of N. fusiformis are 1-septate. Molecular sequence data confirm the presence of two distinct species.
Micrographs of Nagrajomyces laojunshanensis on Rhododendron cinnabarinum (holotype
Morphologically, the most distinctive features of the new species of Nagrajomyces are septate conidia with long, single, apical appendages. The presence of this structure distinguishes them from all anamorphic genera known to belong to Gnomoniaceae. Both new species proposed in the present study and the known species N. dictyosporus inhabit twigs of Rhododendron. In spite of the absence of molecular data for the type species of Nagrajomyces, these two new species are accommodated in Nagrajomyces based on significant morphological features (distinctive conidia) and identical ecology.
Many coelomycetous genera have conidia with appendages (
In the phylogenetic analysis presented herein, the two new species, N. fusiformis and N. laojunshanensis form a clade with high support values, which is separate from other species of Gnomoniaceae represented by sequence data in GenBank. These two new species described in this study fill gaps in the molecular data of Nagrajomyces and also enable the taxonomic status of the new species to be determined.
A total of 38 genera are currently included in the family Gnomoniaceae based on morphological and molecular analyses (
In addition to morphological characteristics and molecular sequence data, host ranges are often useful to delineate genera and species of Gnomoniaceae (
Rhododendron is the largest genus of woody plants in the northern hemisphere, and its species diversity is highest in the Himalaya-Hengduan Mountains and Southeast Asia (
This study was supported by the National Natural Science Foundation of China (grant number 31870629 and 32270012). We are grateful to the two anonymous reviewers whose comments and suggestions helped improve the manuscript.