Research Article |
Corresponding author: Yong Wang ( yongwangbis@aliyun.com ) Academic editor: Huzefa Raja
© 2022 Jing-E Sun, Chao-Rong Meng, Alan J. L. Phillips, Yong Wang.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Sun J-E, Meng C-R, Phillips AJL, Wang Y (2022) Two new Botryosphaeria (Botryosphaeriales, Botryosphaeriaceae) species in China. MycoKeys 94: 1-16. https://doi.org/10.3897/mycokeys.94.91340
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Five ascomycetous strains were isolated from dead branches and leaves of Salix (Salicaceae) and Osmanthus fragrans (Oleaceae), respectively. BLAST searches with ITS sequences in GenBank suggested a high degree of similarity to Botryosphaeria dothidea. To accurately identify these strains, we further analysed their morphological characteristics of asci, ascospores, all conidiophore cells and conidia. Phylogenetic relationships, based on ITS, rpb2, tef1 and tub2 gene sequences, confirmed our strains represented two novel species, which are introduced here as B. salicicola and B. osmanthuse spp. nov.
Ascomycetes, molecular analyses, morphology, new species, new woody host
The genus Botryosphaeria (Botryosphaeriales, Botryosphaeriaceae) was established by
Botryosphaeria has been considered as one of the hot topics in fungal taxonomy for a long time, based on its universality, including areas and hosts (from 1863 to 2022) (
Some species of Botryosphaeria are aggressive pathogens in China, mainly distributed in the southwest, such as B. fabicerciana, B. fujianensis, B. fusispora, B. kuwatsukai, B. dolichospermatii, B. pseudoramosa and B. wangensis as shown in Table
Fungi were isolated from dry branches of Salix (Salicaceae) and diseased leaf pieces of Osmanthus fragrans (Oleaceae) collected in forest parks in Guizhou and Guangxi Provinces, China, respectively. Samples were placed in envelopes and returned to the laboratory as described by
Pure cultures were obtained using a single spore isolation method as described in
Mycelium growing on PDA for seven days was scraped off with a sterile scalpel. Total DNA was extracted with a (Biomiga#GD2416, San Diego, California, USA) BIOMIGA Fungus Genomic DNA Extraction Kit (GD2416) following the manufacturer’s protocol. Four loci (ITS, rpb2, tef1 and tub2) were amplified with the respective forward and reverse primers (Table
Used genes | Primer | Direction | Sequence (5’–3’) | Reference |
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tef1 | EF1-688 | Forward | CGGTCACTTGATCTACAAGTGC |
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EF1-1251 | Reverse | CCTCGAACTCACCAGTACCG | ||
ITS | ITS1 | Forward | TCCGTAGGTGAACCTGCGG |
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ITS4 | Reverse | TCCTCCGCTTATTGATATGC | ||
tub2 | BT-2a | Forward | GGTAACCAAATCGGTGCTGCTTTC |
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BT-2b | Reverse | ACCCTCAGTGTAGTGACCCTTGGC | ||
rpb2 | fRPB2-5f2 | Forward | GATGATAGAGATCATTTTGG |
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fRPB2-7cR | Reverse | CCCATAGCTTGTTTACCCAT |
Newly-generated sequences were deposited in GenBank. All the taxa used in the phylogenetic analyses are provided in Table
Taxa used for molecular phylogenetic analyses and their GenBank accession numbers. (T) = ex-type strains.
Species | Strain | Host | Country | GenBank accession numbers | |||
---|---|---|---|---|---|---|---|
ITS | tef1 | tub2 | rpb2 | ||||
Botryosphaeria agaves | CBS 133992T | Agave sp. | Thailand | JX646791 | JX646856 | JX646841 | N/A |
B. agaves | MFLUCC 10-0051 | Agave sp. | Thailand | JX646790 | JX646855 | JX646840 | N/A |
B. auasmontanum | CMW 25413T | Pinus sp. | Namibia | KF766167 | N/A | N/A | N/A |
B. corticis | CBS 119047T | Vaccinium corymbosum | USA | DQ299245 | EU017539 | EU673107 | N/A |
B. corticis | ATCC 22927 | Vaccinium sp. | USA | DQ299247 | EU673291 | EU673108 | N/A |
B. dothidea | CBS 115476T | Prunus sp. | Switzerland | AY236949 | AY236898 | AY236927 | N/A |
B. dothidea | CBS 110302 | Vitis vinifera | Portugal | AY259092 | AY573218 | EU673106 | N/A |
B. fabicerciana | CBS 127193T | Eucalyptus sp. | China | HQ332197 | HQ332213 | KF779068 | N/A |
B. fabicerciana | CMW 27121 | Eucalyptus sp. | China | HQ332198 | HQ332214 | KF779069 | N/A |
B. fujianensis | CGMCC 3.19099T | Vaccinium uliginosum | China | MH491973 | MH491977 | MH562330 | N/A |
B. fujianensis | BJFUCC 180226-3 | Vaccinium uliginosum | China | MW251380 | MW251388 | MW251379 | N/A |
B. fusispora | MFLUCC 10-0098T | Entada sp. | Thailand | JX646789 | JX646854 | JX646839 | N/A |
B. fusispora | MFLUCC 11-0507 | Caryota sp. | Thailand | JX646788 | JX646853 | JX646838 | N/A |
B. guttulata | CGMCC3.20094T | N/A | China | MT327839 | MT331606 | N/A | N/A |
B. guttulata | GZCC 19-0188 | N/A | China | MT327833 | MT331601 | N/A | N/A |
B. kuwatsukai | CBS 135219T | Malus domestica | China | KJ433388 | KJ433410 | N/A | N/A |
B. kuwatsukai | LSP 5 | Pyrus sp. | China | KJ433395 | KJ433417 | N/A | N/A |
B. dolichospermatii | CGMCC 3.19096T | Vaccinium uliginosum | China | MH491970 | MH491974 | MH562327 | N/A |
B. dolichospermatii | CGMCC 3.19097 | Vaccinium uliginosum | China | MH491971 | MH491975 | MH562328 | N/A |
B. minutispermatia | GZCC 16-0013T | Dead wood | China | KX447675 | KX447678 | N/A | N/A |
B. minutispermatia | GZCC 16-0014 | Dead wood | China | KX447676 | KX447679 | N/A | N/A |
B. osmanthuse | GUCC 21433T | GUCC 21433 | China | OL854215 | OP650906 | OP669376 | OP650903 |
B. osmanthuse | GUCC 21433.1 | Osmanthus fragrans | China | OL854216 | OP650907 | OP669377 | OP650904 |
B. osmanthuse | GUCC 21433.2 | Osmanthus fragrans | China | OL854217 | OP650908 | OP669378 | OP650905 |
B. pseudoramosa | CERC 2001T | Eucalyptus hybrid | China | KX277989 | KX278094 | KX278198 | MF410140 |
B. pseudoramosa | CERC 2983 | Melastoma sanguineum | China | KX277992 | KX278097 | KX278201 | MF410143 |
B. puerensis | CSF6052 T | Eucalyptus urophylla | China | MT028569 | MT028735 | MT028901 | MT029057 |
B. qingyuanensis | CERC 2946T | Eucalyptus hybrid | China | KX278000 | KX278105 | KX278209 | MF410151 |
B. qingyuanensis | CERC 2947 | Eucalyptus hybrid | China | KX278001 | KX278106 | KX278210 | MF410152 |
B. quercus | MFLUCC:14-0459 T | Quercus sp. | Italy | KU848199 | N/A | N/A | N/A |
B. ramosa | CBS 122069T | Eucalyptus camaldulensis | Bell Australia | EU144055 | EU144070 | KF766132 | N/A |
B. ramosa | CGMCC 3.18004 | Acacia sp. | China | KX197073 | KX197093 | KX197100 | N/A |
B. rosaceae | CGMCC 3.18007T | Malus sp. | China | KX197074 | KX197094 | KX197101 | N/A |
B. rosaceae | CGMCC 3.18008 | Amygdalus sp. | China | KX197075 | KX197095 | KX197102 | N/A |
B. salicicola | GUCC 21230T | Salix | China | OL854218 | OP669379 | OP750032 | N/A |
B. salicicola | GUCC 21230.1 | Salix | China | OL854219 | OP669380 | OP750033 | N/A |
B. scharifii | CBS 124703T | Mangifera indica | Iran | JQ772020 | JQ772057 | N/A | N/A |
B. sinensia | CGMCC 3.17722T | Populus sp. | China | KT343255 | N/A | N/A | N/A |
B. tenuispora | MUCC 2900 | Aucuba japonica | Japan | LC585276 | LC585148 | LC585172 | N/A |
B. tenuispora | MUCC 237T | Leucothoe fontanesiana | Japan | LC585278 | LC585150 | LC585174 | LC585196 |
B. wangensis | CERC 2298T | Cunninghamina deodara | China | KX278002 | KX278107 | KX278211 | MF410153 |
B. wangensis | CERC 2299 | Cunninghamina deodara | China | KX278003 | KX278108 | KX278212 | MF410154 |
Cophinforma atrovirens | MFLUCC 11-0425 T | Eucalyptus sp. | Thailand | JX646800 | JX646865 | JX646848 | N/A |
C. atrovirens | MFLUCC 11-0655 | Eucalyptus sp. | Thailand | JX646801 | JX646866 | JX646849 | N/A |
Neoscytalidium dimidiatum | CBS 145.78T | Homo sapiens | United Kingdom | KF531816 | KF531795 | KF531796 | N/A |
N. dimidiatum | CBS 251.49 | Juglans regia | USA | KF531819 | KF531797 | KF531799 | N/A |
ML analysis was performed using IQ-TREE (
MP, ML bootstrap support values greater than 70% and BI posterior probability values greater than 0.90 were denoted at the nodes and separated by “/”. Bootstrap values less than 70% and BI posterior probability values less than 0.90 were labelled with “_”.
The MP, ML and Bayesian analyses resulted in trees with similar topologies and the MP tree is shown in Fig.
Trees resulting from MP analysis of the combined ITS, rpb2, tef1 and tub2 sequence alignment for forty-three isolates in Botryosphaeria. RAxML and MP bootstrap support values (ML, MP ≥ 70%) and Bayesian posterior probability (PP ≥ 0.90) are denoted on the nodes (ML/MP/PP). The tree was rooted to Neoscytalidium dimidiatum (CBS 145.78 and CBS 251.49) and Cophinforma atrovirens (MFLUCC 11-0425 and MFLUCC 11-0655). The new species are highlighted in pale red. The scale bar indicates 8.0 expected changes per site.
In the phylogenetic tree (Fig.
The DNA base differences in four loci between the two new species and closely-related species.
Species | Strain number | ITS (1–458 characters) | tef1 (459–703 characters) | tub2 (704–1039 characters) | rpb2 (1040–1754 characters) |
---|---|---|---|---|---|
Botryosphaeria salicicola | GUCC 21230 | 0 | 0 | 0 | – |
GUCC 21230.1 | 0 | 0 | 0 | – | |
B. corticis | CBS 119047 | 10 (gap: 2) | 11 (gap: 6) | 6 (gap: 0) | – |
ATCC 22927 | 10 (gap: 2) | 11 (gap: 6) | 6 (gap: 0) | – | |
B. fabicerciana | CBS 127193 | 4 (gap: 3) | 8 (gap: 2) | 3 (gap: 1) | – |
CMW 27121 | 4 (gap: 3) | 8 (gap: 2) | 3 (gap: 1) | – | |
B. fujianensis | CGMCC 3.19099 | 4 (gap: 3) | 8 (gap: 2) | 4 (gap: 1) | – |
BJFUCC 180226-3 | 4 (gap: 3) | 8 (gap: 2) | 4 (gap: 1) | – | |
B. fusispora | MFLUCC 10-0098 | 4 (gap: 3) | 10 (gap: 3) | 3 (gap: 1) | – |
MFLUCC 11-0507 | 4 (gap: 3) | 10 (gap: 3) | 3 (gap: 1) | – | |
B. kuwatsukai | CBS 135219 | 4 (gap: 4) | 7 (gap: 2) | – | – |
LSP 5 | 4 (gap: 4) | 7 (gap: 2) | – | – | |
B. rosaceae | CGMCC 3.18007 | 4 (gap: 4) | 7 (gap: 2) | 2 (gap: 0) | – |
CGMCC 3.18008 | 4 (gap: 4) | 7 (gap: 2) | 2 (gap: 0) | – | |
B. dothidea | CBS 115476 | 8 (gap: 2) | 12 (gap: 4) | 3 (gap: 1) | – |
CBS 110302 | 8 (gap: 2) | 12 (gap: 4) | 3 (gap: 1) | – | |
Species | Strain number | ITS (1–456 characters) | tef1 (471–702 characters) | tub2 (703–1034 characters) | rpb2 (1035–1750 characters) |
Botryosphaeria osmanthuse | GUCC 21443 | 0 | 0 | 0 | 0 |
GUCC 21443.1 | 0 | 0 | 0 | 0 | |
GUCC 21443.2 | 0 | 0 | 0 | 0 | |
B. puerensis | CSF6052 | 1 (gap: 1) | 13 (gap: 4) | 8 (gap: 0) | 8 (gap: 0) |
B. dothidea | CBS 115476 | 5 (gap: 1) | 9 (gap: 2) | 12 (gap: 0) | – |
CBS 110302 | 5 (gap: 1) | 9 (gap: 2) | 12 (gap: 0) | – |
In reference to the host from which the fungus was first isolated.
Botryosphaeria salicicola is characterised by oval to broadly fusiform ascospores (25.2 × 10.8; L/W = 2.3 vs. 22.7× 7.8 µm, L/W = 2.9) and cylindrical to clavate asci (65–170 × 20–30 µm), with moderate growth rate.
China, Guizhou Province, Guiyang City, 26°65'N, 106°63'E, from branches of Salix sp., 20 June 2020, C.R. Meng, HGUP 21230 (holotype), ex-type culture GUCC 21230.
Saprobic on dead branches of Salix. Teleomorph: Ascomata superficial, becoming erumpent at maturity, aggregated, thick-walled, wall composed of dark brown, thick-walled textura angularis, becoming thinner-walled and hyaline towards the inner layers, 160 µm diam. Hamathecium comprising hyaline, septate, branched, 2–3.5 µm wide filamentous pseudoparaphyses. Asci 65–170 × 20–30 µm, 8-spored, bitunicate, cylindrical, to clavate, stipitate. Ascospores 22–26 × 9.0–13 µm (average = 25.2 × 10.8 µm, n = 20, L/W = 2.3), irregularly biseriate in the ascus, hyaline, guttulate, smooth with granular contents, aseptate, oval to broadly fusiform, widest in the middle or upper third of the ascospore, tapering to the obtuse base and apex. Anamorph: Not observed.
Ascospores germinate on PDA within 24 hours at room temperature (25 °C). Colonies with white fluffy mycelium on PDA (90 mm), after 7 days becomes grey-black at the bottom of centre, olivaceous-grey at the bottom of edge, white mycelium, raised, fluffy, dense filamentous.
China, Guizhou Province, Guiyang City.
China, Guizhou Provice, Guiyang City, 26°65'N, 106°63'E, from dead branches of Salix, 20 June 2020, C.R. Meng, HGUP 21230, living culture GUCC 21230.1.
NCBI BLAST searches of ITS sequences from our strains suggested a high degree of similarity (99–100%) to Botryosphaeria dothidea. However, B. salicicola and B. dothidea show distant phylogenetic relationships in the phylogeny. Botryosphaeria salicicola has longer asci (65–170 × 20–30 µm vs. 63–125 × 16–20 µm) than B. dothidea and longer ascospores (25.2 × 10.8; L/W = 2.3 vs. 22.7× 7.8 µm, L/W = 2.9) (
In reference to the host from which the fungus was first isolated.
Botryosphaeria osmanthuse is characterised by aseptate narrowly fusiform conidia (16.0–20.5 × 5.0–6.0 µm (average = 17.0 × 5.3 µm, n = 45, L/W = 3.2) and short-length conidiogenous cells (8.5–10.5 × 2.3–2.8 µm), with moderate growth rate.
China, Guangxi Province, Nanning City, 22°51'N, 108°19'E, from leaves of Osmanthus fragrans, 20 October 2017, C.R. Meng, HGUP 21433 (holotype), ex-type living culture GUCC 21433.
Saprobic on living leaves of Osmanthus fragrans. Teleomorph: Not observed. Anamorph: Conidiomata up to 200 µm diam., covered with hyphae, black, globose, ostiolate, solitary, separate, uniloculate, immersed to semi-immersed. Conidiomatal wall composed of thick-walled, dark brown cells of textura angularis, becoming thin-walled and hyaline towards the inner region. Conidiophores reduced to conidiogenous cells. Conidiogenous cells 8.5–10.5 × 2.3–2.8 µm (average = 10 × 2.5 µm, n = 20), holoblastic, discrete, hyaline, cylindrical to lageniform, phialidic with periclinal thickening. Paraphyses not were seen. Conidia 16.0–20.5 × 5.0–6.0 µm (average = 17.0 × 5.3 µm, n = 45, L/W = 3.2), hyaline, thin-walled, smooth with granular contents, unicellular, aseptate narrowly fusiform, base subtruncate to bluntly rounded.
Conidia germinate on PDA within 24 hours at room temperature (25 °C) with germ tubes produced from both ends of the conidia. Colonies with white fluffy mycelium on PDA (90 mm), after 7 days becomes raised, fluffy, white mycelium, dense filamentous.
China, Guangxi Province, Nanning City.
China, Guangxi Province, Nanning City, 22°51'N, 108°19'E, from living leaves of Osmanthus fragrans, 20 October 2017, C.R. Meng, HGUP 21433, living culture GUCC 21433.1 and GUCC 21433.2.
NCBI BLAST searches of ITS sequences from our strains suggest a high degree of similarity (99–100%) to Botryosphaeria dothidea. However, DNA bases in the two loci (tef1 and tub2) showed a high amount of difference between B. osmanthuse and B. dothidea. Botryosphaeria osmanthuse shows close phylogenetic affinity to B. puerensis (Fig.
Two new species of Botryosphaeria, B. salicicola and B. osmanthuse, are described and illustrated from southern China in this paper. Previously reported Botryosphaeria species in China are listed in Table
Species | Strain | Host/ Natural substrate | Regions | Fungi | References |
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Botryosphaeria fabicerciana | CBS 127193 | Eucalyptus sp. | Fujian | Pathogens |
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CMW 27094 | Eucalyptus sp. | Fujian | Pathogens |
|
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CMW 27121 | Eucalyptus sp. | Fujian | Pathogens |
|
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CERC 2930 | Eucalyptus sp. | Yunnan | Pathogens |
|
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CERC 3446 | Eucalyptus sp. | Guangdong | Pathogens |
|
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CERC 2912 | E. urophylla & E. grandis | Yunnan | Pathogens |
|
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CERC 2913 | E. urophylla & E. grandis | Yunnan | Pathogens |
|
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B. fujianensis | CGMCC 3.19099 | Vaccinium uliginosum | Fujian | Pathogens |
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BJFUCC 180226-3 | V. uliginosum | Fujian | Pathogens |
|
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BJFUCC 180226-4 | V. uliginosum | Fujian | Pathogens |
|
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B. fusispora | CSF6063 | E. urophylla & E. grandis | Yunnan | Pathogens |
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CSF6178 | E. globulus | Yunnan | Pathogens |
|
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CSF5872 | E. urophylla & E. grandis | Yunnan | Pathogens |
|
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CSF5950 | E. urophylla & E. grandis | Yunnan | Pathogens |
|
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CSF6160 | E. globulus | Yunnan | Pathogens |
|
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CSF6056 | E. urophylla & E. grandis | Yunnan | Pathogens |
|
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B. guttulata | CGMCC3.20094 | Decaying branch | Guizhou | Saprobes |
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GZCC 19-0186 | Decaying branch | Guizhou | Saprobes |
|
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GZCC 19-0188 | Decaying branch | Guizhou | Saprobes |
|
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B. kuwatsukai | CBS 135219 | Malus domestica | Unknown | Pathogens |
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LSP 5 | Pyrus sp. | Unknown | Pathogens |
|
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B. dolichospermatii | CGMCC 3.19096 | V. uliginosum | Fujian | Pathogens |
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CGMCC 3.19097 | V. uliginosum | Fujian | Pathogens |
|
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GZCC 16-0013 | Dead wood | Guizhou | Saprobes |
|
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GZCC 16-0014 | Dead wood | Guizhou | Saprobes |
|
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B. pseudoramosa | CERC 2001 | E. hybrid | Guangxi | Pathogens |
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CERC 2982 | Unknow | Guangxi | Pathogens |
|
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CERC 2983 | Melastoma sanguineum | Guangxi | Unsure |
|
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CGMCC 3.18739 | Eucalyptus sp. | Guangxi | Unsure |
|
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CERC 3462 | Eucalyptus sp. | Guangxi | Unsure |
|
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CERC 2019 | E. urophylla & E. grandis | Guangxi | Unsure |
|
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CERC 2987 | Me. sanguineum | Guangxi | Unsure |
|
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CERC 3455 | Eucalyptus sp. | Guangxi | Unsure |
|
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CERC 2988 | Me. sanguineum | Guangxi | Unsure |
|
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B. qingyuanensis | CERC 2946 | E. hybrid | Guangdong | Pathogens |
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CERC 2947 | E. hybrid | Guangdong | Pathogens |
|
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B. ramosa | CGMCC 3.18004 | Acacia sp. | Hainan | Unsure |
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CGMCC 3.18006 | Myrtaceae | Guangdong | Unsure |
|
|
B. rosaceae | CGMCC 3.18007 | Malus sp. | Shandong | Unsure |
|
CGMCC 3.18008 | Amygdalus sp. | Shandong | Unsure |
|
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CGMCC3.18009 | Malus sp. | Shandong | Unsure |
|
|
CGMCC3.18010 | Pyrus sp. | Shandong | Unsure |
|
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CFCC 82350 | Malus sp. | Unknown | Unsure |
|
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CGMCC3.18011 | Pyrus sp. | Shandong | Unsure |
|
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B. sinensia | CGMCC 3.17722 | Populus sp. | Henan | Unsure |
|
CGMCC 3.17723 | Morus sp. | Henan | Unsure |
|
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CGMCC 3.17724 | Juglans regia | Henan | Unsure |
|
|
CFCC 82346 | J. regia | Beijing | Unsure |
|
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CFCC 82255 | Ma. pumila | Beijing | Unsure |
|
|
B. wangensis | CERC 2298 | C. deodara | Henan | Pathogens |
|
CERC 2299 | C. deodara | Henan | Pathogens |
|
|
CGMCC 3.18744 | C. deodara | Henan | Pathogens |
|
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CERC 2300 | C. deodara | Henan | Pathogens |
|
|
CSF5820 | E. urophylla & E. grandis | Yunnan | Pathogens |
|
|
CSF5733 | Eucalyptus sp. | Yunnan | Pathogens |
|
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CSF5944 | E. urophylla & E. grandis | Yunnan | Pathogens |
|
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CSF5971 | E. urophylla & E. grandis | Yunnan | Pathogens |
|
|
CSF5781 | E. globulus | Yunnan | Pathogens |
|
|
CSF6174 | E. globulus | Yunnan | Pathogens |
|
|
CSF5737 | Eucalyptus sp. | Yunnan | Pathogens |
|
|
B. archontophoenicis | HKU (M) 3539 | Archontophoenix alexandrae | Hong Kong | Saprobes | Index Fungorum and mycobank |
B. brunneispora | HKU (M) 3987 | Trachycarpus fortune | Hubei | Unsure | Index Fungorum and mycobank |
B. cunninghamiae | N/A | Cunninghamia lanceolata | China | Saprobes | Index Fungorum and mycobank |
B. puerensis | HMAS 255719 | E. urophylla & E. grandis | China | Pathogens | Index Fungorum and mycobank |
B. qinlingensis | BJFC S1576 | Quercus aliena var. acuteserrata | Shaanxi | Unsure | Index Fungorum and mycobank |
B. yedoensis | N/A | Prunus yedoensis | Taiwan | Unsure | Index Fungorum and mycobank |
Botryosphaeria species have been known to exist in many woody plants (
This research is supported by the following projects: National Natural Science Foundation of China (No. 31972222, 31660011), Program of Introducing Talents of Discipline to Universities of China (111 Program, D20023), Talent project of Guizhou Science and Technology Cooperation Platform ([2017]5788-5, [2019]5641, [2019]13), Guizhou Science, Technology Department of International Cooperation Base project ([2018]5806), the project of Guizhou Provincial Education Department ([2020]001), and Guizhou Science and Technology Innovation Talent Team Project ([2020]5001). Alan JL Phillips acknowledges the support from UIDB/04046/2020 and UIDP/04046/2020 Centre grants from FCT, Portugal (to BioISI).