Research Article |
Corresponding author: Josepa Gené ( josepa.gene@urv.cat ) Academic editor: Cecile Gueidan
© 2018 Isabel Iturrieta-González, Josepa Gené, Josep Guarro, Rafael F. Castañeda-Ruiz, Dania García.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Iturrieta-González I, Gené J, Guarro J, Castañeda-Ruiz RF, García D (2018) Neodendryphiella, a novel genus of the Dictyosporiaceae (Pleosporales). MycoKeys 37: 19-38. https://doi.org/10.3897/mycokeys.37.27275
|
In a survey of soil and herbivore dung microfungi in Mexico and Spain, several dendryphiella-like species were found. Phylogenetic analyses based on ITS and LSU sequences showed that these fungi belonged to the family Dictyosporiaceae (Pleosporales) and represent an undescribed monophyletic lineage distant from Dendryphiella. Therefore, the genus Neodendryphiella is proposed to accommodate three new species, N. mali, N. michoacanensis and N. tarraconensis. The novel genus shares morphological features with Dendryphiella such as differentiated conidiophores and polytretic integrated conidiogenous cells, that produce acropetal branched chains of conidia. Neodendryphiella differs in the absence of nodulose conidiophores bearing conidiogenous cells with pores surrounded by a thickened and darkened wall, typical features in the conidiogenous apparatus of Dendryphiella. In addition, the phylogenetic and morphological analysis of several reference strains of different Dendryphiella species, available for comparison, support the proposal of D. variabilis sp. nov., which mainly differs from the other species of the genus by having conidia up to 7 septa and highlight that D. vinosa and D. infuscans are obscure species that require further taxonomic review.
Dendryphiella , Ascomycota , Phylogeny, Taxonomy
In an ongoing survey of asexual microfungi from soil and herbivore dung, several interesting specimens morphologically consistent with Dendryphiella were found from samples collected in Mexico and Spain. Dendryphiella is a dematiaceous hyphomycete proposed by Bubák and Ranojevič (
Despite the similarity of our soil isolates to Dendryphiella, a preliminary study revealed that they showed a low sequence relationship with members of this genus. On the other hand, they were closely related to the strain CBS 139.95 of Diplococcium (Di.) asperum, which was proven to be related to the Dictyosporiaceae (
The aim of the present study was to resolve the taxonomy of these dendryphiella-like fungi which, based on analysis of the ITS and LSU loci, might represent a new genus in Dictyosporiaceae.
Soil and dung samples collected in different geographical regions (Mexico and Spain) were studied using the wood baiting technique, moist chambers and dilution plating method according to
Species included in this study, their origin and GenBank accession numbers.
Species | Original identification | Strain number1 | Country | Genbank accession no.2 | |
ITS | LSU | ||||
Aquaticheirospora lignicola | RK-2006a (T) | Thailand | AY864770 | AY736378 | |
Cheirosporium triseriale | HMAS 180703 (T) | China | EU413953 | EU413954 | |
Drechslera biseptata | Dendryphiella vinosa | CBS 117.14 | Scotland | LT963770 | LT963509 |
Dendryphiella eucalyptorum | CBS 137987 (T) | Spain | KJ869139 | KJ869196 | |
Dendryphiella fasciculata |
|
Thailand | MF399213 | MF399214 | |
Dendryphiella paravinosa | Dendryphiella vinosa | CBS 118716 | New Zealand | LT963357 | LT963359 |
Dendryphiella paravinosa | Dendryphiella vinosa | CBS 121797 | Spain | LT963354 | LT963355 |
Dendryphiella paravinosa | CBS 141286 (T) | Italy | KX228257 | KX228309 | |
Dendryphiella variabilis | Dendryphiella vinosa | CBS 584.96 (T) | Cuba | LT963453 | LT963454 |
Dendryphiella vinosa | NBRC 32669 | Japan | DQ307316 | 032669013 | |
Dendryphiella vinosa | – | – | – | EU848590 | |
Dictyocheirospora bannica | KH 332 (T) | Japan | LC014543 | AB807513 | |
Dictyocheirospora pseudomusae | KH 412 | Japan | LC014549 | AB807516 | |
Dictyocheirospora rotunda |
|
Thailand | KU179099 | KU179100 | |
Dictyosporium bulbosum | yone 221 | Japan | LC014544 | AB807511 | |
Dictyosporium elegans |
|
Japan | DQ018087 | DQ018100 | |
Dictyosporium strelitziae | CBS 123359 (T) | South Africa | FJ839618 | FJ839653 | |
Digitodesmium bambusicola | CBS 110279 (T) | Philippines | DQ018091 | DQ018103 | |
Gregarithecium curvisporum | KT 922 (T) | Japan | AB809644 | AB807547 | |
Jalapriya inflata |
|
UK | JQ267362 | JQ267363 | |
Jalapriya pulchra |
|
China | KU179108 | KU179109 | |
Jalapriya toruloides | CBS 209.65 | – | DQ018093 | DQ018104 | |
Neodendryphiella mali | Diplococcium asperum | CBS 139.95 (T) | Italy | LT906655 | LT906657 |
Neodendryphiella mali | Dendryphiella sp. | FMR 17003 | Spain | LT993734 | LT993735 |
Neodendryphiella michoacanensis | Dendryphiella sp. | FMR 16098 (T) | Mexico | LT906660 | LT906658 |
Neodendryphiella tarraconensis | Dendryphiella sp. | FMR 16234 (T) | Spain | LT906659 | LT906656 |
Paradendryphiella arenaria | CBS 181.58 (T) | France | KF156010 | KC793338 | |
Paradendryphiella salina | CBS 142.60 | United Kingdom | DQ411540 | KC793339 | |
Pseudocoleophoma calamagrostidis | KT 3284 (T) | Japan | LC014592 | LC014609 | |
Pseudocoleophoma polygonicola | KT 731 (T) | Japan | AB809634 | AB807546 | |
Pseudodictyosporium elegans | CBS 688.93 (T) | Taiwan | DQ018099 | DQ018106 | |
Pseudodictyosporium wauense |
|
Japan | DQ018098 | DQ018105 | |
Torula herbarum | Dendryphiella infuscans | CBS 381.81 | Netherlands | LT963446 | LT963455 |
The isolates were cultured on PDA for 7 days at 25 °C in darkness. The DNA was extracted through the modified protocol of
The sequences generated in the present study were compared with those of the National Center for Biotechnology Information (NCBI) using the Basic Local Alignment Search Tool (BLAST). Alignments for each locus were made with the MEGA (Molecular Evolutionary Genetics Analysis) software v. 6.0. (
For the ML phylogenetic analysis of the LSU region, the best nucleotide substitution model determined by the same programme was the Kimura 2-parameter with Gamma distribution and, for the ITS region, it was the General Time Reversible model with Gamma distribution. The combined analysis of these two phylogenetic markers was tested through Incongruence Length Difference (ILD) implemented in the Winclada programme (
For the BI phylogenetic analysis, the best nucleotide substitution model was determined using jModelTest (
The DNA sequences and alignments generated in this study were deposited in GenBank (Table
The microscopic characterisation of the fungi studied was carried out according to
Macroscopic characterisation of the colonies was made on PDA, Oatmeal Agar (OA; Oatmeal 30 g, agar 13 g, distilled water 1 l), Potato Carrot Agar (PCA; potato 20 g, carrot 20 g, agar 13 g, distilled water 1 l), SNA (KH2PO4 1 g, KNO 1 g, MgSO4×7H2O 0.5 g, KCl 0.5 g, Glucose 0.2 g, Sucrose 0.2 g, agar 14 g, distilled water 1 l) and Malt Extract Agar (MEA; Peptone 1 g, Glucose 20 g, Malt Extract 20 g, agar 15 g, distilled water 1 l) after 14 days at 25 °C in darkness. Colony colours in descriptions were matched with
Nomenclatural novelties and descriptions were deposited in MycoBank (
The BLAST query revealed that LSU sequences of our dendryphiella-like isolates (FMR 16098, FMR 16234 and FMR 17003) showed a high percentage of identity (99%) with that of the isolate CBS 139.95 of Di. asperum and all of them were related to the Dictyosporiaceae. However, they showed a sequence identity of between 96-97% with LSU sequences of Dictyosporium species and other members of this family, including several species of Dendryphiella deposited in the GenBank. The ITS sequences did not match significantly any of those deposited in the NCBI database.
We carried out individual and combined analyses with the LSU and ITS loci to assess relationships with members of the Dictyosporiaceae, including reference strains of D. vinosa and D. infuscans sequenced in the present study. Single phylogenies of LSU and ITS loci encompassed 31 and 30 sequences, respectively, representing 12 genera and including Paradendryphiella arenaria and P. salina (Pleosporaceae) as outgroup (Figs
Maximum Likelihood (ML) tree constructed with the ITS and LSU sequences of 30 strains representatives of different taxa in the families Dictyosporiaceae and Pleosporaceae. The phylogenetic tree was rooted with Paradendryphiella arenaria and P. salina. Bootstrap support values for ML greater than 70% and Bayesian posterior probabilities greater than 0.95 are given near nodes, respectively. Names of species newly described here are indicated in bold. Branch lengths are proportional to distance. T Ex-type strain.
Regarding the five Dendryphiella strains included in this study, only three (CBS 118716, CBS 121797 and CBS 854.96) nested in the well-supported clade of Dendryphiella and none of them matched sequences representative of the type species of the genus D. vinosa (DQ 307316.1, EU848590.1 and
The name refers to the morphological similarity with Dendryphiella.
Neodendryphiella tarraconensis Iturrieta-González, Gené & Dania García.
Conidiophores semi-macronematous to macronematous, mononematous, erect or slightly flexuous, unbranched or branched towards the apical region, septate, subhyaline to brown, smooth to verrucose, cylindrical, some slightly swollen in the conidiogenous loci. Conidiogenous integrated, terminal or intercalary, polytretic, cylindrical or clavate, forming conidia in acropetal branched chains. Ramoconidia aseptate or septate, pale brown, smooth to verruculose, mostly cylindrical or subcylindrical, rounded apex and truncate base, with several pores and conidial scars often thickened and darkened. Conidia blastocatenate, aseptate or septate, pale brown, verruculose to verrucose, ellipsoidal, doliiform, clavate or subcylindrical, with scars thickened and darkened. Sexual morph not observed.
Italy, Mexico and Spain.
Name refers to the substrate, Malus domestica, where the type strain of the species was collected.
Italy, Dipt. Prot. Valor. Agroalimentare, from leaf of Malus domestica, Feb. 1995, A. Cesari (holotype CBS H-23477, culture ex-type CBS 139.95).
Mycelium superficial and immersed, composed of septate, branched, smooth to verruculose, hyaline to pale brown hyphae of 1–3 μm wide. Conidiophores semi-macronematous to macronematous, mononematous, erect or slightly flexuous, branched or unbranched, up to 11-septate, cylindrical, up to 385 μm long, 3–4 μm wide, brown, usually darker toward the base, smooth to verrucose. Conidiogenous terminal and intercalary, mostly cylindrical, 8–38 × 3–4(–5) μm, with 1–4 pores. Ramoconidia 0–1-septate, with up to 3 terminal and lateral pores, pale brown, smooth to verruculose, mostly cylindrical, (11–)15–17(–21) × 3–4 μm. Conidia catenate, with up to 10 conidia in the terminal unbranched part, (0–)1-septate, usually not constricted at the septum, pale brown, verruculose to verrucose, ellipsoidal, doliiform or subcylindrical with more or less rounded ends, 4–15 × 3–5 μm.
(14 d at 25 °C). Colonies on PDA reaching 22 mm diam., convex, slightly convoluted at the centre, pastel grey to white (1C1/1A1), aerial mycelium scarce, with slightly fimbriate margin; reverse olive brown to yellowish-brown (4D3/3A2). On PCA attaining 23 mm diam., flat, olive brown to greyish-beige (4F8/4C2), aerial mycelium scarce, slightly fimbriate margin; reverse greyish-beige to brownish-grey (4C2/4D2). On OA reaching 40 mm diam., flat, granular, yellowish-brown to reddish-yellow (5E8/4B7), aerial mycelium scarce, with a regular margin; reverse olive brown to yellowish-brown (4D8/4B7). On SNA attaining 24 mm diam., flat, slightly granular, olive brown to grey (4F8/4B1), aerial mycelium scarce, with fimbriate margin; reverse yellowish-brown (5F7/5E4). On MEA reaching 11–15 mm diam., umbonate, slightly cerebriform towards the periphery, velvety, olive grey (3E2), with irregular margin; reverse olive grey (3E2).
Optimum 25 °C, maximum 30 °C, minimum 10 °C.
Italy and Spain.
Spain, Els Ports de Beseit Natural Park, Teruel, from herbivore dung, Oct. 2017, Dania García (FMR 17003)
Although LSU sequences of N. mali (CBS 139.95 and FMR 17003) were very similar to those of N. michoacanensis (FMR 16098) and N. tarraconensis (FMR 16234), ITS regions showed a similarity of 96.2% (identities = 441/458, gaps 2/458 (0 %)) with respect to N. michoacanensis and of 92.3% (identities = 423/458, gaps 1/458 (0%)) with respect to N. tarraconensis. ITS sequences of the two latter species described below were 92.1% similar (identities = 422/458, gaps 0/458 (0%)).
Neodendryphilla mali is morphologically very similar to N. michoacanensis since both have conidia and ramoconidia 0–1-septate; however, N. michoacanensis has shorter conidiophores (up to 280 μm long) and terminal conidial branches with fewer conidia (up to 4 per branch), which measure 5–16(–18) × 3–6 μm. In addition, 2-septate conidia can also be present in N. michoacanensis and this species tends to grow faster than N. mali on PDA (34 mm vs 22 mm diam. after 14 d, respectively) and PCA (42 mm vs 23 mm diam. after 14 d, respectively). Neodendryphiella mali also resembles D. infuscans, but the latter exhibits longer conidiophores, up to 500 μm and smooth to minutely verruculose conidia with up to 2 septa (
As mentioned before, the strain CBS 139.95 was identified as Di. asperum and found by other authors to be related with dictyosporium-like fungi (
Name refers to Michoacán, the geographical area where the fungus was collected.
Mexico, Michoacán, Villa Jiménez, from soil, Sept. 2016, E. Rodriguez-Andrade (holotype CBS H-23478; culture ex-type CBS 144323 = FMR 16098).
Mycelium superficial and immersed, composed of septate, branched, smooth to verruculose and hyaline to pale brown hyphae of 1–3 μm wide. Conidiophores semi-macronematous to macronematous, mononematous, erect or slightly flexuous, slightly branched, 1–13 septate, cylindrical or slightly swollen in the conidiogenous loci, 44–280 × 2–4 μm, brown, usually darker toward the base, smooth or verruculose, verrucose at the base. Conidiogenous terminal and intercalary, cylindrical or clavate, 11–62 × 3–5 μm, with up to 3 pores. Ramoconidia (0–)1-septate, with up to 4 terminal or subterminal pores, pale brown, smooth to verruculose, cylindrical, subcylindrical, to slightly clavate, with more or less rounded apex and truncate base, 12–23 × 3–4(–5) μm. Conidia catenate, with up to 4 conidia in the terminal unbranched part, (0–)1(–2)-septate, some slightly constricted at the septum, pale brown, verruculose to verrucose, ellipsoidal or subcylindrical, 5–16(–18) × 3–6 μm.
(14 d at 25 °C). Colonies on PDA reaching 34 mm diam., slightly umbonate, velvety, olive brown (4F6/4E8), with slightly fimbriate margin; reverse dark green (30F8) to black. On PCA attaining 42 mm diam., flat, granular, olive brown (4F8), aerial mycelium scarce, fimbriate margin; reverse dark green to olive brown (30F8/4F8). On OA reaching 48 mm diam., flat, granular, yellowish-brown to olive (5F4/3D4), aerial mycelium scarce, with a regular margin; reverse brownish-grey to greyish-yellow (4D2/3B6). On SNA attaining 22 mm diam., flat, slightly granular, olive brown (4F8), aerial mycelium scarce, with slightly fimbriate margin; reverse dark green (30F8) to black. On MEA reaching 13–15 mm diam., slightly umbonate, flat towards the periphery, velvety, yellowish-grey to olive (3C2/3F8), with white irregular margin; reverse olive grey to dark green (3E2/30F8).
Optimum 25 °C, maximum 30 °C, minimum 10 °C.
México.
Neodendryphiella michoacanensis morphologically resembles N. mali, in its conidiogenous apparatus with 0–1-septate ramoconidia, but the latter differs by having longer conidiophores (up to 385 μm), terminal conidial chains with up to 10 conidia and its conidia are 0–1-septate and smaller (4–15 × 3–5 μm). Neodendryphiella michoacanensis also resembles D. uniseptata in their conidial morphology, but ramoconidia of the latter species are often aseptate and can be up to 30 μm long (
Name refers to Tarragona, the geographical area where the fungus was collected.
Spain, Tarragona, from garden soil, Feb. 2017, I. Iturrieta-González (holotype CBS H-23479, culture ex-type CBS 144324 = FMR 16234).
Mycelium superficial and immersed abundant, composed of septate, branched, smooth to verruculose, hyaline to pale brown hyphae, 1–2 μm wide. Conidiophores macronematous, mononematous, erect or slightly flexuous, branched or unbranched, up to 6-septate, cylindrical, 19–185 × 2–5 μm, brown, smooth, darker and finely verrucolose towards the base. Conidiogenous terminal and intercalary, subcylindrical to clavate, 9–35 × (2–)3–4(–5) μm, with up to 2 pores. Ramoconidia (0–)1–2(–3)-septate, usually slightly constricted at the septa, with up to 3 terminal and subterminal pores, pale brown, smooth to verruculose, mostly cylindrical, with rounded apex and truncate base, 12–21(–23) × 4–5 μm. Conidia catenate, with up to 7 conidia in the terminal unbranched part, (0–)1–2-septate, pale brown, verruculose, ellipsoidal or subcylindrical with more or less rounded ends, 6–21 × 3–6(–7) μm; when 1-septate, the septum is often submedial and slightly constricted, when 2-septate, usually constricted at only one septum.
(14 d at 25 °C). Colonies on PDA reaching 23 mm diam., umbonate, velvety, greyish-brown to olive brown (5E3/4F8), with slightly fimbriate margin; reverse dark green (30F8) to black. On PCA attaining 24 mm diam., flat, velvety, olive brown (4F8), slightly fimbriate margin, reverse dark green to olive brown (28F5/3B2) with a pale yellow (4A3) diffusible pigment. On OA reaching 30 mm diam., flat, slightly granular, yellowish-brown to olive brown (5F8/4F4), aerial mycelium scarce, with regular margin; reverse yellowish-brown to olive brown (5F8/4F4). On SNA attaining 21 mm diam., flat, slightly granular, yellowish-brown to olive (5F4/3F5), aerial mycelium scarce, with fimbriate margin; reverse yellowish-brown to olive (5F4/3F5). On MEA reaching 8-10 mm diam., slightly elevated but depressed at the centre, radially folded, velvety, olive (2F8), with irregular margin; reverse olive (2F4).
Optimum 25 °C, maximum 30 °C, minimum 10 °C.
Spain.
In addition to the genetic differences mentioned above, N. tarraconensis differs from the other two species in the genus by the presence of ramoconidia with up to 3 septa and conidia from terminal branches with mostly 1–2-septate. It is noteworthy that 1-septate conidia usually show a slightly longer basal cell since the septum is submedial and, when 2-septate, often only one of the septa is constricted, features not described in any species of Dendryphiella and Neodendryphiella.
Name refers to the variable number of septa in the conidia.
Cuba, from a dead leaf of a Lauraceous tree, 1996, R.F. Castañeda (holotype CBS H-23476; ex-type cultures CBS 584.96 = INIFAT C95/105-4 = MUCL 39840 = FMR 16563).
Mycelium superficial and immersed, composed of septate, branched, smooth to verruculose hyaline to pale brown hyphae, 1–3 μm wide. Conidiophores macronematous, mononematous, often arranged in loose fascicules, erect or slightly flexuous, branched, 1–8-septate, nodulose toward the apex, up to 143 μm long, 2–6 μm wide, brown, smooth to verruculose. Conidiogenous terminal and intercalary, sympodially extended towards the apex, with 1–5 pores surrounded by a thickened and darkened wall, clavate, 7–37 × 3–6(–7) μm. Ramoconidia (0–)2–3-septate, cylindrical to subcylindrical, with rounded ends, 16–27 × 5–6 μm, usually with 2 apical pores, conidial scars thickened and darkened. Conidia in short branched chains, with up to 5 conidia in the terminal unbranched part, (0–)3(–7)-septate, some constricted at the medial septum, pale brown, verruculose to verrucose, cylindrical or subcylindrical, with rounded ends, 6–44 × 4–6 μm, conidial scars often thickened and darkened. Sexual morph not observed.
(14 d at 25 °C). Colonies on PDA reaching 30–33 mm diam., slightly umbonate, flat towards the periphery, velvety, irregularly coloured yellowish-grey to olive brown (4B2/4D3) and brownish-grey to yellowish-brown (5F2/5F4), with irregular margin; reverse yellowish-brown (5F8) to black. On PCA attaining 48 mm diam., flat, granular to velvety, yellowish-brown (5F8), aerial mycelium scarce, undulate margin; reverse olive to greyish-yellow (3F4/3B4), with a pale yellow diffusible pigment. On OA reaching 58 mm diam., flat, slightly granular, blond to reddish-yellow (5C4/4A7), light yellow (4A4) at the periphery, aerial mycelium scarce, with a regular margin, with scarce pale brown exudate; reverse same colouration with the colony surface. On SNA attaining 40 mm diam., flat, slightly granular to velvety, yellowish-brown to grey (5F7/4B1), with fimbriate margin; reverse brownish-grey to white (5D2/1A1). On MEA reaching 32 mm diam., flat, cottony, yellowish-grey to olive (4B2/3F4), yellowish-grey (3B2) at the periphery, with regular margin; reverse dark green to white (30F8/1A1).
Optimum 25 °C, maximum 30 °C, minimum 15 °C.
Cuba.
Dendryphiella variabilis differs from D. paravinosa mainly by having longer conidia (up to 44 μm), which can have up to 7 septa. The conidia of D. paravinosa are up to 3-septate and measure (10−)24−27(−33) × (6−)7(−7.5) μm (
The present study proposes the genus Neodendryphiella based on the analysis of the ITS and LSU sequences, which represented an undescribed monophyletic lineage related but phylogenetically distant from the morphologically similar genus Dendryphiella. Both genera belong to the Dictyosporiaceae (Dothideomycetes) and share similar conidiophore morphology with polytretic conidiogenous cells forming usually septate conidia arranged in acropetal branched chains. Dendryphiella can be differentiated by the presence of nodulose conidiophores and conidiogeneous cells with pores surrounded by a thickened and darkened wall, which are absent in Neodrendryphiella. Other genera of the Dothideomycetes, although accommodated in different orders or families with a similar conidiogenous apparatus are Dendryphion (Toluraceae, Pleosporales) (
Our phylogenetic study not only allowed us to distinguish very similar isolates in three distinct species, N. mali, N. michoacanensis and N. tarraconensis, but also helped us to correctly identify some strains that had previously been attributed to Dendryphiella (Table
This study was supported by the Spanish Ministerio de Economía y Competitividad, Grant CGL2017-88094-P.
Neodendryphiella gen. nov. Tree LSU
Neodendryphyella gen. nov. Tree ITS