Research Article |
Corresponding author: Ting-Chi Wen ( tingchiwen@yahoo.com ) Academic editor: R. Henrik Nilsson
© 2017 Anan Thawthong, Kalani K. Hapuarachchi, Ting-Chi Wen, Olivier Raspé, Naritsada Thongklang, Ji-Chuan Kang, Kevin D. Hyde.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Thawthong A, Hapuarachchi KK, Wen T-C, Raspé O, Thongklang N, Kang J-C, Hyde KD (2017) Ganoderma sichuanense (Ganodermataceae, Polyporales) new to Thailand. MycoKeys 22: 27-43. https://doi.org/10.3897/mycokeys.22.13083
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Ganoderma sichuanense (Ganodermataceae) is a medicinal mushroom originally described from China and previously confused with G. lucidum. It has been widely used as traditional medicine in Asia since it has potential nutritional and therapeutic values. We collected 8 specimens of Ganoderma species from Thailand and show that they represent the first record of G. sichuanenese for Thailand. In this paper, we describe our specimens of Ganoderma sichuanense based on fresh basidiomes, and provide line drawings and photographs. The data from macro- and microscopic features are consistent with the characteristics of the species. Analysis of ITS sequence data indicates that the Thai collections cluster in same species clade as the epitype of G. sichuanense.
Ganoderma lingzhi , Ganoderma lucidum , Phylogeny, Taxonomy
The genus Ganoderma was established by
“Lingzhi” is the Chinese name mainly referring to G. lucidum (Curtis) P. Karst, which has been widely used in China for medicinal purposes for over two millennia (
The aim of this study is to report and illustrate the new findings of this medicinal species in Thailand and further, to improve the understanding of species delimitation in the genus Ganoderma.
Eight Ganoderma specimens growing up from soil were collected in a single site in Mae On District, Chiang Mai Province, northern Thailand (18°52.02'N, 99°18.18'E) during the rainy season between June 2015 and September 2015.
Macro-morphological characters were described based on fresh material, and on the photographs provided here. Colour codes (e.g. 3A3) are from
Dried samples of basidiome were used to extract genomic DNA. Genomic DNA was extracted using an EZgene Fungal gDNA Kit (Biomiga, CA, USA) according to the manufacturer instructions. DNA concentrations were estimated visually in agarose gel by comparing band intensity with a DNA ladder 1Kb (Invitrogen Biotech). The nuclear ribosomal internal transcribed spacer (ITS) was amplified using primers ITS5 and ITS4 (
Other sequences used in the analyses (Table
Species | Voucher /strain | Origin | 5.8 ITS | Reference |
---|---|---|---|---|
Ganoderma adspersum | ITA 39 | Unknown | EF060011 | GenBank |
Ganoderma adspersum | PF263 | Italy | JN176908 | GenBank |
Ganoderma applanatum | GA165 | Unknown | DQ425009 | GenBank |
Ganoderma applanatum | K(M)120829 | UK | AY884179 | GenBank |
Ganoderma annulare | KCTC 16803 | Unknown | JQ520160 |
|
Ganoderma atrum | 7 | Unknown | JQ886403 | GenBank |
Ganoderma australe | HMAS86595 | England | AY884184 | GenBank |
Ganoderma australe | GDGM25831 | China | JX195200 | Genbank |
Ganoderma boninense | WD2085 (FFPRI) | Japan | KJ143906 |
|
Ganoderma boninense | WD2028 (FFPRI) | Japan | KJ143905 |
|
Ganoderma carnosum | K(M) 109415 | UK | AY884175 | GenBank |
Ganoderma cupreum | HMAS130804 | Australia | JX840345 | GenBank |
Ganoderma curtisii | CBS 100131 | NC, USA | JQ781848 |
|
Ganoderma curtisii | CBS 100132 | NC, USA | KJ143967 |
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Ganoderma destructans | CMW43672 | South Africa | KR183858 |
|
Ganoderma destructans | CMW43671 | South Africa | KR183857 |
|
Ganoderma flexipes | Wei5200 (IFP) | JN383978 |
|
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Ganoderma flexipes | Wei5494 (IFP) | Hainan, China | JN383979 | Cao and Yuan, 2013 |
Ganoderma fornicatum | TN23 | India | FJ655476 | GenBank |
Ganoderma fornicatum | KR20 | India | FJ655474 | GenBank |
Ganoderma fornicatum | BCRC35374 | Taiwan | JX840349 |
|
Ganoderma fornicatum | TNM-F0010592 | China | JX84034 |
|
Ganoderma fornicatum | TNM-F0009926 | China | JX840348 |
|
Ganoderma fulvellum | xsd08051 | Unknown | FJ478088 | GenBank |
Ganoderma gibbosum | XSD-34 | Unknown | EU273513 | GenBank |
Ganoderma hoehnelianum | Dai 12096 | China | KU219989 | GenBank |
Ganoderma hoehnelianum | Dai 11995 | China | KU219988 | GenBank |
Ganoderma leucocontextum | GDGM44303 | China | KJ027607 |
|
Ganoderma leucocontextum | TL-2013 | China | KF011548 |
|
Ganoderma lipsiense | FIN 131R610 | Unknown | EF060004 | GenBank |
Ganoderma lipsiense | NOR74/67/5 | Unknown | EF060002 | GenBank |
Ganoderma lingzhi | HKAS76642 (Iso type) | Yunnan, China | KC222318 |
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Ganoderma lingzhi | Dai12574 (IFP) | Liaoning, China | KJ143908 |
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Ganoderma lingzhi | HSD06B | Taihang mountains, China | KC511557 | GenBank |
Ganoderma lingzhi | Dai3583 | China | JQ781868 |
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Ganoderma lingzhi | Dai12374 | China | JQ781867 |
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Ganoderma lingzhi | Li245 | China | JQ781863 |
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Ganoderma lingzhi | Dai12426 | China | JQ781870 |
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Ganoderma lingzhi | Cui6982 | China | JQ781862 |
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Ganoderma lingzhi | Cui4018 | China | JQ781856 |
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Ganoderma lobatum | JV 0402/24 | Unknown | KF605677 | GenBank |
Ganoderma lobatum | JV 1212/10J | Unknown | KF605676 | GenBank |
Ganoderma lucidum | Dai11593 (IFP) | Finland | JQ781852 |
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Ganoderma lucidum | K175217 | UK | KJ143911 |
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Ganoderma lucidum | MT2610 (BRNM) | Czech Republic | KJ143912 |
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Ganoderma lucidum | Dai2272 (IFP) | Sweden | JQ781851 |
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Ganoderma lucidum | HKAS76455 | Yunnan, China(Cultivated) | KC222320 |
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Ganoderma lucidum | HKAS76643 | Yunnan, China | KC222323 |
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Ganoderma lucidum | HKAS71088 | Yunnan, China | KC222321 |
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Ganoderma lucidum | OE–234 | India | AY636059 | GenBank |
Ganoderma lucidum | GICN04 | Italy | AM906058 |
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Ganoderma lucidum | XZ-G-B | Unknown | HQ235632 | GenBank |
Ganoderma lucidum | CSAAS0801 | Unknown | FJ940919 | GenBank |
Ganoderma lucidum | XZ-G-A1 | Unknown | HQ235630 | GenBank |
Ganoderma lucidum | CSAAS0801 | Unknown | FJ940919 | GenBank |
Ganoderma lucidum | GIT 099 | Italy | AM269773 | GenBank |
Ganoderma mastoporum | CMU-HM1 | Thailand | JN643730 | GenBank |
Ganoderma mastoporum | TNM-F0018838 | China | JX840350 |
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Ganoderma mastoporum | Gma-1 | Unknown | GU213486 | GenBank |
Ganoderma multipileum | HMAS242384 | Sichuan Province, China | JF915409 |
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Ganoderma multipileum | CWN04670 | Taiwan, China | KJ143913 |
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Ganoderma multipileum | Dai9447 | Hainan, China | KJ143914 |
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Ganoderma multipileum | DYU | Taiwan, China | KJ868083 | GenBank |
Ganoderma multiplicatum | URM83346 | Brazil | JX310823 | GenBank |
Ganoderma neojaponicum | ASI 7032 | Unknown | JQ520193 |
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Ganoderma orbiforme | BCC22324 | Thailand | JX997990 |
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Ganoderma oregonense | CBS 265.88 | OR, USA | JQ781875 |
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Ganoderma oregonense | CBS 266.88 | OR, USA | JQ781876 |
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Ganoderma oerstidii | GO138 | Argentina | DQ425011 | GenBank |
Ganoderma parvulum | URM83343 | Brazil | JQ618246 | GenBank |
Ganoderma parvulum | URM80765 | Brazil | JX310822 | GenBank |
Ganoderma pfeifferi | CBS 747.84 | Netherlands | JQ520198 |
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Ganoderma pfeifferi | K(M)120818 | UK | AY884185 | GenBank |
Ganoderma pfeifferi | 874 (CAS–IM) | Czech Republic | AM906059 |
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Ganoderma philippi | E7098 | Indonesia, Sumatra islands | AJ536662 | GenBank |
Ganoderma philippi | E7425 | Malaysia, Selangor | AJ608713 | GenBank |
Ganoderma ramosissium | xsd08085 | Unknown | FJ478127 | GenBank |
Ganoderma ramosissium | xsd08032 | Unknown | EU918700 | GenBank |
Ganoderma resinaceum | BR 4150 (Rivoire) | France | KJ143915 |
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Ganoderma resinaceum | Gre4 | Italy (Modena) | KJ509598 | GenBank |
Ganoderma resinaceum | CBS 194.76 | Netherlands | KJ143916 |
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Ganoderma sichuanense | MFU 16-2667 | Thailand | KY244061 | This study |
Ganoderma sichuanense | MFU 16-2668 | Thailand | KY244062 | This study |
Ganoderma sichuanense | MFU 16-2669 | Thailand | KY244063 | This study |
Ganoderma sichuanense | MFU 16-2709 | Thailand | KY244068 | This study |
Ganoderma sichuanense | MFU 16-2670 | Thailand | KY404119 | This study |
Ganoderma sichuanense | MFU 16-2671 | Thailand | KY244064 | This study |
Ganoderma sichuanense | MFU 16-2672 | Thailand | KY244065 | This study |
Ganoderma sichuanense | MFU 16-2673 | Thailand | KY244066 | This study |
Ganoderma sichuanense | CGMCC5.2175 (epitype) | Sichuan, China | KC662402 |
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Ganoderma sichuanense | Cui 7691 (BJFC) | Guangdong, China | JQ781878 |
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Ganoderma sinense | GS175 | Unknown | DQ425014 | GenBank |
Ganoderma sinense | GS92 | Unknown | DQ424982 | GenBank |
Ganoderma subresinosum | T162 | Unknown | KJ654376 | GenBank |
Ganoderma subresinosum | 7-SU-3-C-70(M)-B | Indonesia | KJ654472 | GenBank |
Ganoderma subresinosum | 3C-29 | Indonesia | KJ654406 | GenBank |
Ganoderma subresinosum | 5-D-3-D-26 | Indonesia | KJ654467 | GenBank |
Ganoderma tornatum | NPG1 | Malaysia | KJ767488 | GenBank |
Ganoderma tropicum | BCRC37122 (TNM) | Taiwan, China | EU021457 |
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Ganoderma tropicum | He 1232 | China | KF495000 | GenBank |
Ganoderma tropicum | Dai9724 | China | JQ781879 |
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Ganoderma tropicum | AP17 | India | FJ491960 | GenBank |
Ganoderma tsugae | Dai3937 (IFP) | China | JQ781853 |
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Ganoderma tsugae | 12751b (BJFC) | USA(CT) | KJ143919 |
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Ganoderma tsugae | AFTOL-ID771 | Unknown | DQ206985 |
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Ganoderma tsugae | Yuan5649 | China | JQ781854 |
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Ganoderma tsugae | Dai12760 | USA | KJ143920 |
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Ganoderma valesiacum | CBS 428.84 | USA | JQ520218 |
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Ganoderma zonatum | FL02 (TNM) | USA(FL) | KJ143921 |
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Ganoderma zonatum | FL03 (TNM) | USA(FL) | KJ143922 |
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Tomophagus colossus | TC-02 (TNM) | Vietnam | KJ143923 |
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The tree topologies obtained from ML and BY were identical. Therefore, only the ML tree is shown (Fig.
Phylogram generated by maximum likelihood analysis of 5.8S-ITS rDNA sequences. Bootstrap support values for maximum likelihood (in black) greater than 70% and Posterior Probabilities (PP) from Bayesian Inference (in blue) ≥0.95 are given above branches. The tree was rooted with Tomophagus colossus. The strain numbers are mentioned after the species names. Specimens of the newly recorded species are indicated in red and type specimens are indicated in black bold. (Treebase ID 20740)
Ganoderma lucidum sensu S.C. Teng, Sinensia 5: 198. 1934. Misapplied name.
Ganoderma lingzhi Sheng H. Wu, Y. Cao & Y.C. Dai, in Cao, Wu & Dai, Fungal Diversity 56, 1: 54, 2012. Synonymy.
Basidiome annual to perennial, with distinctly contracted base to stipitate, corky, becoming hard corky to woody hard when dry. Pileus 4.5–8 cm, up to 0.5 cm thick at the base, dimidiate, subreniform; upper surface when young pale yellow (3A3) to light orange (5A5), becoming brownish orange (7C8) when old, strongly laccate to partly laccate, distinctly concentrically sulcate, distinctly radially rugose. Spore deposit usually pale orange; margin abruptly paler, pale yellow, slightly lobate. Context duplex, not completely homogeneous in color, greyish orange (5B3) corky; generative hyphae (1.1–1.3 µm diam, colorless, thin-walled; binding hyphae (2.1–3.1) µm in diam., branched, with clamp-connections, skeleton hyphae (3.05–3.1) µm in diam. thick walled, sometimes branched, reddish brown in KOH, dextrinoid. Pore surface pale yellow when young, becoming brownish orange (6C4) when old; tubes up to 0.2 cm long in total, pale brown or smoky brown, without context layer between tube layers; pores sub circular. Basidiospores with a dark brown eusporium bearing thick echinulae, overlaid by a hyaline myxosporium, (8.2)8.3–9.8(10.2) × (5.6)5.7–6.8(7.3) µm (with myxosporium), (5.3)6.2–7.5(7.7) × (4.2)4.2–5.3(5.7) µm (without myxosporium), ellipsoid, Qm = 1.37 (n = 20). Lm = 9.09 μm, Wm = 6.27μm, Cutis 4–12 mm thick, pale brown streaks the cutis, a closely-packed palisade, yellowish brown, clavate terminal elements, about 15–30 µm long. Stipe flattened or sub cylindrical to cylindrical, lateral to horizontally lateral or eccentric, (6–9) × (1.5 along stipe) cm, dark brown (8F5).
THAILAND, Chiang Mai Province, Mae On District, (18°52.02'N, 99°18.18'E), eight specimens (MFU 16-2667, MFU 16-2668, MFU 16-2669, MFU 16-2670, MFU 16-2671, MFU 16-2672, MFU 16-2673, MFU 16-2709).
Rotten wood, in dry dipterocarp forest and in upper mixed deciduous forest and growing up from soil.
Tropical and temperate regions of China; Thailand (this study).
Ganoderma strains used in this study were clustered in six major clades (G. applanatum, G. sichuanense, other laccate and non laccate Ganoderma, G. lucidum species complex, G. orbiforme and Ganoderma species). Sequences obtained from the eight Thai collections clustered in the well-supported G. sichuanense group. The Thai specimens are closely related to the originally described Chinese G. lingzhi taxa (Cui 9166, Cui 6982 and Dai 12426) and the epitype of G. sichuanense (CGMCC5.2175), forming a monophyletic group with G. sichuanense from China with 98% bootstrap support. However, one of the strains of G. sichuanense (Cui7691) of which we retrieved a sequence from GenBank clustered in the G. lucidum species complex. This strain was most likely wrongly identified. The specimens have been collected at some geographical distance (min. 100 m between two collection points), which makes it unlikely that all come from the same mycelium. Nevertheless it is interesting to note that all new isolates cluster together and could not be segregated based on our phylogenetic analyses (Fig.
Ganoderma sichuanense was originally described from the Sichuan Province in 1983 and was diagnosed as having a distinctly radially rugose pileus, with a verrucose or tuberculose upper surface; pore surface yellowish when young, becoming brown or black when bruised; and small spores (Fig.
Macroscopic, microscopic, and molecular data all confirm that the collections from Thailand belong to G. sichuanense. This is the first discovery of the species in Thailand. The study of more collections of this species is needed to better estimate the variability of this taxon.
This work was financed by the Science Research Foundation of Guizhou University (No. 201309), the featured microbial resources and diversity investigation in Southwest Karst area (2014FY120100), Thailand Research Fund grant – Taxonomy, Phylogeny and biochemistry of Thai Basidiomycetes (BRG 5580009), Research and researcher for industries (RRi) (PhD57I0036), and Higher Education Research Promotion and National Research University Project of Thailand, Office of the Higher Education Commission (2559A30762012).