Short Communication |
Corresponding author: Yousuke Degawa ( degawa@sugadaira.tsukuba.ac.jp ) Academic editor: Thorsten Lumbsch
© 2015 Yousuke Degawa, Tsuyoshi Hosoya, Kentaro Hosaka, Yumiko Hirayama, Yukiko Saito, Yan-Jie Zhao.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Degawa Y, Hosoya T, Hosaka K, Hirayama Y, Saito Y, Zhao Y-J (2015) Rediscovery of Roesleria subterranea from Japan with a discussion of its infraspecific relationships detected using molecular analysis. MycoKeys 9: 1-9. https://doi.org/10.3897/mycokeys.9.6564
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Roesleria subterranea, a distinctive hypogeous fungus, was collected from unidentified deciduous plant roots in red pine forests. The fungus had been documented several times in the past in Japan, but with no description. A description is given here based on specimens collected in Japan. The sequence of the D1-D2 region of the 28S rDNA obtained from the isolate was identical to those of the European and American specimens. Maximum parsimony analysis incorporating the present data and all other available ITS-5.8S sequences for R. subterranea showed that there are two infraspecific groups. One of them, composed of the isolates from Vitis spp. in Germany, Italy, and USA, was monophyletic. The other group, composed of isolates from deciduous trees in various countries, including Japan, was paraphyletic. The phylogenetic patterns indicate that the host may be more important than geographical distance for the genetic diversification of R. subterranea.
Geographic distribution, Helotiales , Hypogeous fungi, ITS-5.8S, Taxonomy
Roesleria subterranea (Weinm.) Redhead is a distinctive hypogeous fungus currently placed in Roesleriaceae (
Roesleria subterranea is distributed primarily in Europe and North America, with rare reports from Asia. In Japan, three presumptive occurrences of R. subterranea have been reported. Roesleria hypogaea Thüm. & Pass. was first documented in Japan by
A specimen of R. subterranea was recently collected from unknown deciduous tree roots in the red pine forests in Sugadaira heights, Nagano prefecture, Japan, from which an isolate was obtained. Because R. subterranea is a subterranean fungus with a unique phylogenetic position as a helotiaceous fungus, it is documented here with molecular data and reference to the specimens in Japan.
A specimen was collected on roots of unknown trees beneath the log of Pinus densiflora, among the conifer forests of 30-year-old trees mixed with other deciduous trees such as Betula platyphylla, Cerastrus orbiculatus, Ligustrum tschonoskii, Rhododendron japonicum, Swida controvers. Although Vitis coignetiae is present in this forest, no individual was found nearby the collection site of the fungus, so it seems likely plausible that the host was not Vitis. The material was air-dried at 23°C for 24 hours. A small amount of spores were picked up by a fine needle and transferred to plates of malt extract agar (MEA; Nissui, Tokyo, Japan), cornmeal agar (CMA; Nissui), and half-strength malt extract-yeast extract agar (MEYE; malt extract 3 g; yeast extract 3 g, peptone 5 g, dextrose 10 g, agar 15 g, DW 1 L). Germination was observed under a light microscope to obtain a pure culture. The specimen and isolate were deposited in the mycological herbarium of the National Museum of Nature and Science (TNS) and the National Institute of Technology and Evaluation, Biological Resource Center (NBRC). The color names and codes in the description followed the Pantone color bridge (Pantone Inc., Carlstadt, NJ, USA), adopting the CYMK color system. Additional specimens collected in Japan were investigated in the TNS fungal herbarium.
The isolates were incubated in 2% malt extract broth for 2 weeks, and the mycelium was harvested. Approximately 50 mg of mycelium was mechanically lysed by a Qiagen Tissue Lyser Kit (Qiagen Inc., Mississauga, ON, Canada), using ceramic beads following the manufacturer’s instructions. The DNA was extracted using a DNeasy Plant Mini Kit (Qiagen Inc.) following the manufacturer’s instructions. To amplify the internal transcribed spacer (ITS1 and ITS2) and 5.8S rDNA regions (ITS-5.8S), the primer pair ITS1F and ITS4 (
The available sequences for Roesleria subterranea were obtained from GenBank (Table
Sequences used in the present study. New sequences generated for this analysis are in bold.
Name | ID of the isolate | ITS-5.8S | 28S rDNA* | Origin | Country |
Roesleria subterranea | NBRC108276 | AB628057 | AB628056 | on roots of deciduous plant | Japan |
Roesleria subterranea | CBS 271.82 | EF060309 | on roots of Populus sp. | Netherlands | |
Roesleria subterranea | CBS 339.96 | EF060308 | EF608074 | buried twig of deciduous shrub | Austria |
Roesleria subterranea | CBS 320.33 | EF060307 | on roots of Malus sylvestris | Netherlands | |
Roesleria subterranea | CBS 201.25 | EF060306 | on roots of Vitis vinifera | USA | |
Roesleria subterranea | IB 2005/504 | EF060305 | “V. berlandieri × V. viparia” | Germany | |
Roesleria subterranea | IB 2005/511 | EF060304 | on roots of V. berlandieri × V. viparia | Germany | |
Roesleria subterranea | IB 2005/510 | EF060303 | on roots of V. berlandieri × V. viparia | Germany | |
Roesleria subterranea | IB 2005/507 | EF060302 | “V. berlandieri × V. viparia” | Germany | |
Roesleria subterranea | IB 2005/505 | EF060301 | on roots of V. berlandieri × V. viparia | Germany | |
Roesleria subterranea | IB 2005/506 | EF060300 | EF608075 | Germany | |
Roesleria subterranea | IB 2005/508 | EF060299 | on roos of V. rupestris × V. riparia | Germany | |
Roesleria subterranea | CBS 407.51 | EF060298 | EF608073 | Italy | |
Hymenoscyphus epiphyllus | isolate 1489 | AY348580 | |||
Hymenoscyphus immutabilis | isolate 71809 | AY348584 | |||
Hymenoscyphus scutula | MBH29259 | AY789432 |
≡ Pilacre subterranea Weinm., Flora 15 (Beiblatt, Bd. 1), p. 458, 1832.
For the detailed synonymy, see
Apothecia capitate, long-stalked, 0.5–1.5 mm high, hypogeous, on plant root; head spherical to irregular, 0.4 mm diam., composed of dried spore mass (mazaedia), powdery, grayish green (C16M0Y36K0); stalk 0.1 mm diam., base of apothecium with elongated cells (7–13 × 2.5–4.5 μm), pale-colored; ectal excipulum not observed due to maturation of apothecia. Asci 40–55 × 6.5–7.0 μm, cylindrical-clavate, thin walled, arising from croziers, eight-spored, evanescent, releasing ascospores by degradation of ascal wall; apex rounded, Meltzer reaction– with or without KOH pretreatment. Ascospores 5–6.4 × 4.5–5.5 μm, broadly elliptical, almost hyaline, pale-colored to dark-colored due to maturation, aseptate when young, becoming almost spherical to lenticular, transversely one-septate. Germination tubes usually occur from each cell of ascospores. Paraphyses cylindrical, simple, straight to waving, enlarged toward apex up to 6-μm wide, multiseptate, often long, extending beyond asci. Ascospores germinated on CMA, MEA, and MEYE to produce mycelium. On PDA, colonies of 65 mm diam in 30 days at 23 C, surface floccose; aerial mycelium well-developed at center, white; substratal mycelium dark green (C24M5Y98K35), becoming paler (C10M0Y54K0) toward the margin. Colonies were dark green (C24M0Y98K8) from the reverse, producing stronger colored patches, paler (C6M0Y54K0) toward margin. On MEA, colonies 65 mm diam in 30 days at 23 C, surface floccose; aerial mycelium well developed, light green (C10M0Y72K0) at center, becoming sparse and paler (C6M0Y54K0) toward margin; substratal mycelium obscured. Colonies dark green (C20M4K100Y32) at center from reverse, becoming paler (C6M0Y54K0) toward margin. On CMA, colonies 60 mm diam in 30 days at 23 C, mycelium sparse, with almost no coloration. Asexual state not observed in culture.
Japan. Nagano Prefecture: Pinus densiflora forests approximately 30 years old, Sugadaira Montane Research Center, University of Tsukuba, Ueda (36°52.12'N, 138°34.97'E(DDM)), ca 1300–1360 m, 19 Nov 2010, Y. Degawa (TNS-F-38701), on unknown deciduous plant roots (not Vitis), multi-ascospore isolate FC-2678 (NBRC108276). Hokkaido isl., Sapporo: 20 Aug 1922, K. Togashi (TNS-F-185301) as Calicium pallidum, on Vitis vinifera. Iwate Prefecture: Morioka, Oct 1935, “College Orchard”, “Murata” (TNS-F-185302) as Calicium pallidum, on Vitis vinifera (The words with double quotation indicate the data written on the original specimen label. The precise information is unclear, as this specimen was donated to TNS by K. Togashi.).
The specimen collected at Sugadaira showed similar morphological agreement with previous reports (
Two other genera are known for their occurrence on plant roots. One is Moserella Pöder & Scheuer, known as a root endophyte of Picea, and the other is Roeslerina Redhead, obtained from coniferous roots (
We found two specimens (TNS-F-185301 and 185302) of R. subterranea deposited in TNS as Calicium pallidum, which were reported by
The sequence of the D1-D2 region of 28S rDNA was almost identical to the available sequences from European specimens. The present sequence differed from EF608073, EF608074, and EF608075 at three, one, and four sites, respectively, among the 554 sites that were compared. The ITS-5.8S sequence was almost identical to the available sequences, and the identification based on morphology was confirmed.
In the MP analysis, we incorporated the available ITS-5.8S sequences of R. subterranea, using the three species of Hymenoscyphus used in
A single most parsimonious tree was obtained (Fig.
Although the tree topology depends on the choice of outgroup (data not shown), the monophyly of the species as a whole and the monophyly of the clade of isolates from Vitis (“Vitis-clade”) were highly stable (BS values were 100 in the present data and also in
All of the known isolates of the “Vitis clade” were obtained from cultivated grape samples. On the other hand, isolates of “non-Vitis grade” including our isolate were from the roots of Malus sylvesris, Populus sp. and other unknown wild deciduous trees. It is therefore hypothesized that isolates highly specific to Vitis are more widely distributed in the cultivated grape fields than is currently recognized. To clarify whether such a host specificity is present or not, inoculation experiments are indispensable. In addition, further isolates from various hosts and localities should be collected and examined to know the infraspecific relationships of the species.
Roesleria subterranea (TNS-F-38701). 1 Growing habits of two mature mazaedia on the root tip of an unidentified tree 2 Hymenium of mazaedium, showing protruding paraphyses 3 Enlarged hymenium showing developmental stages of asci and paraphyses 4 Mature ascus containing eight ascospores 5 Paraphysis 6 Discharged matured ascospores; on the right, a transversely one-septate spore is shown in side view 7 Germination of ascospores on MEYE, showing that germination tubes from one of the two-celled spores 2–6 Mounted in Meltzer’s solution 7 Mounted in lacto-aniline blue. Bars: 1 = 2 mm; 2 = 50 μm; 3–7 = 10 μm.
A single most parsimonious tree of Roesleria subterranea (ITS-5.8S sequences). Tree length = 31, CI = 0.8065, HI = 0.1935, RI = 0.8723, RC = 0.7035. The tree was constructed from a dataset of all available ITS-5.8S sequences of R. subterranea from various hosts and localities. The numbers on the branches indicate the bootstrap values (BP) of 1000 replications in maximum parsimony analysis when the BP exceeds 50%. The scale bar indicates the number of substitutions. Abbreviations indicate the localities of the isolates: AU, Austria; GE, German; IT, Italy; NE, Netherlands; US, USA; JP, Japan.
We thank Dr. Gen Okada for reviewing and improving the manuscript. Elsevier Language Editing Services is acknowledged for their helps on revising English sentences.