Latest Articles from MycoKeys Latest 2 Articles from MycoKeys https://mycokeys.pensoft.net/ Thu, 28 Mar 2024 14:30:53 +0200 Pensoft FeedCreator https://mycokeys.pensoft.net/i/logo.jpg Latest Articles from MycoKeys https://mycokeys.pensoft.net/ Taxonomy of Thelidium auruntii and T. incavatum complexes (lichenized Ascomycota, Verrucariales) in Finland https://mycokeys.pensoft.net/article/98738/ MycoKeys 96: 1-23

DOI: 10.3897/mycokeys.96.98738

Authors: Juha Pykälä, Annina Kantelinen, Leena Myllys

Abstract: The taxonomy of lichen species morphologically similar to Thelidium auruntii and T. incavatum in Finland is being revised. Based on ITS and morphology, ten species occur in Finland. All species are restricted to calcareous rocks. The Thelidium auruntii morphocomplex includes six species: T. auruntii, T. huuskonenii sp. nov., T. pseudoauruntii sp. nov., T. sallaense sp. nov, T. toskalharjiense sp. nov. and T. sp. 1. In the ITS phylogeny, T. auruntii, T. pseudoauruntii and T. sallaense group together, but the remaining species are placed outside of this clade. All the species have northern distribution in Finland, occurring on fells in NW Finland and/or in gorges in the Oulanka area in NE Finland. The Thelidium incavatum morphocomplex includes four species: T. declivum sp. nov., T. incavatum, T. mendax sp. nov. and T. sp. 2. This morphogroup is not resolved as monophyletic in the ITS phylogeny, with only T. declivum and T. mendax forming a strongly supported group. Thelidium incavatum is rather common in SW Finland, with one separate locality in eastern Finland. Thelidium declivum occurs only in the Oulanka area. Thelidium mendax occurs in the Oulanka area, but one locality is known from eastern central Finland. Thelidium sp. 2 is known from one locality in SW Lapland.

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Research Article Wed, 8 Mar 2023 21:14:50 +0200
A long-read amplicon approach to scaling up the metabarcoding of lichen herbarium specimens https://mycokeys.pensoft.net/article/77431/ MycoKeys 86: 195-212

DOI: 10.3897/mycokeys.86.77431

Authors: Cécile Gueidan, Lan Li

Abstract: Reference sequence databases are critical to the accurate detection and identification of fungi in the environment. As repositories of large numbers of well-curated specimens, herbaria and fungal culture collections have the material resources to generate sequence data for large number of taxa, and could therefore allow filling taxonomic gaps often present in reference sequence databases. Financial resources to do that are however often lacking, so that recent efforts have focused on decreasing sequencing cost by increasing the number of multiplexed samples per sequencing run while maintaining high sequence quality. Following a previous study that aimed at decreasing sequencing cost for lichen specimens by generating fungal ITS barcodes for 96 specimens using PacBio amplicon sequencing, we present a method that further decreases lichen specimen metabarcoding costs. A total of 384 mixed DNA extracts obtained from lichen herbarium specimens, mostly from the four genera Buellia, Catillaria, Endocarpon and Parmotrema, were used to generate new fungal ITS sequences using a Sequel I sequencing platform and the PacBio M13 barcoded primers. The average success rate across all taxa was high (86.5%), with particularly high rates for the crustose saxicolous taxa (Buellia, Catillaria and others; 93.3%) and the terricolous squamulose taxa (Endocarpon and others; 96.5%). On the other hand, the success rate for the foliose genus Parmotrema was lower (60.4%). With this taxon sampling, greater specimen age did not appear to impact sequencing success. In fact, the 1966–1980 collection date category showed the highest success rate (97.3%). Compared to the previous study, the abundance-based sequence denoising method showed some limitations, but the cost of generating ITS barcodes was further decreased thanks to the higher multiplexing level. In addition to contributing new ITS barcodes for specimens of four interesting lichen genera, this study further highlights the potential and challenges of using new sequencing technologies on collection specimens to generate DNA sequences for reference databases.

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Research Article Wed, 2 Feb 2022 10:50:14 +0200