Research Article |
Corresponding author: Malka Saba ( rustflora@gmail.com ) Academic editor: María P. Martín
© 2023 Malka Saba, Abdul Nasir Khalid, Samina Sarwar.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Saba M, Khalid AN, Sarwar S (2023) New species of Mallocybe (Agaricales, Inocybaceae) from Pakistan, based on morphological and molecular evidence. MycoKeys 99: 171-186. https://doi.org/10.3897/mycokeys.99.86844
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Within the family Inocybaceae, many species of Mallocybe have been reported, but there are only a few reports of this genus from Pakistan. In this study, six collections of Mallocybe were studied by morphological and phylogenetic methods. Phylogenetic analyses, based on sequence data from two different loci (ITS and LSU) using Maximum Likelihood and Maximum Parsimony methods, have been performed to infer species relationships within Mallocybe. Results indicated that these six collections encompass two new species of Mallocybe i.e. M. pakistanica and M. pinicola, from Pakistan. Their detailed morphological descriptions and illustrations are also provided. In addition, comparison with morphologically closely-related taxa is also discussed. Previously, only two species of this genus have been recorded from Pakistan and, with this addition, the total number of reported taxa of Mallocybe has been raised to four from Pakistan. A key to the described taxa of Mallocybe from Pakistan is also provided.
Asia, molecular systematics, phylogeny, Pinaceae
The Inocybaceae Jülich is a monophyletic family encompassing ectomycorrhizal fungi with worldwide distribution (
Macroscopically, Mallocybe species are recognised by a fibrous or scaly often flattened pileus, a short stipe, ochre, brown or red brown colouration, a cortina, adnate lamellae and absence of a spermatic odour. Microscopically, distinctive characters of this genus include; smooth spores, absence of pleurocystidia, thin-walled without crystals cheilocystidia and necropigment in basidia of fresh and dried specimens (
During an investigation of ectomycorrhizal fungi associated with pine species in Pakistan, basidiomata were collected, described and photographed from the selected sampling sites in the field. Colours were compared to the Munsell Soil Colour Charts (
Genomic DNA was extracted from a 20 mg piece of dried tissue by a modified CTAB method (
Primers used for amplification were: ITS1F (
PCR products were run on 1% agarose gel, stained with ethidium bromide and bands were visualised under a UV transilluminator. Amplified PCR products of the ITS region were sent for purification and bidirectional sequencing to Macrogen (Republic of Korea). PCR products of 28S were purified using QIAquick PCR purification kit (Qiagen, Stanford, California) as per manufacturer’s guidelines and sequencing reactions were performed using the Big Dye Terminator v.3.1 Cycle Kit (Life Technologies, Carlsbad, California). Sequencing was carried out using the same primers as those used for PCR.
Sequences were manually edited and assembled in BioEdit v.7.2.6 (
In the BLASTn search, based on ITS sequences, Mallocybe pakistanica had the highest sequence identity (94.76%) with Mallocybe megalospora (Stangl & Bresinsky) Matheny & Esteve-Rav. HQ604786 (unpublished sequence). Mallocybe pinicola had the highest sequence identity (93.86%) with type sequence of Mallocybe siciliana (Brugaletta, Consiglio & M. Marchetti) Brugaletta, Consiglio & M. Marchetti NR_164583 (
Closely-related sequences were retrieved from NCBI GenBank (https://www.ncbi.nlm.nih.gov/genbank/), following
To estimate the placement and phylogenetic relationships of the new species, Maximum Likelihood (ML) and Maximum Parsimony (MP) analyses of the concatenated ITS+nrLSU datasets were conducted. MP analysis was performed in PAUP* version 4.0b10 (
In this study, twelve novel sequences of two genes i.e. ITS and LSU were newly generated from our collections. Combined dataset I (ITS+LSU) contained forty-two sequences from eighteen taxa (Table
Species | Specimen voucher/Isolate | Country | Accession numbers | Reference | |
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ITS | nrLSU | ||||
I. dulcamara | EL59-05 | Norway | GU980643 | GU980643 |
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I. dulcamara | CLC 1333 | USA | GU980635 | GU980635 |
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M. agardhii | AB980912 | Denmark | HM209790 | HM209790 |
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M. arenaria | EL25008 | France | FN550937 | FN550937 |
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M. arthrocystis | EL9207 | Sweden | FN550941 | FN550941 |
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M. cf. squarrosoannulata | CLC1566 | Not given | GU980606 | GU980606 |
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M. cf. squarrosoannulata | EL120-08 | Not given | GU980607 | GU980607 |
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M. fulvipes | EL99-07 | Sweden | GU980600 | GU980600 |
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M. fuscomarginata | EL10906 | Sweden | FN550940 | FN550940 |
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M. fuscomarginata | BJ890718 | Sweden | GU980656 | GU980656 |
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M. granulosa | SJ84030 | Not given | KR029725 | KR029725 |
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M. granulosa | EL138-09 | Not given | KR029727 | KR029727 |
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M. granulosa | EL138-09 | Sweden | KR029727 | KR029727 |
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M. granulosa | SJ84030 | Sweden | KR029725 | KR029725 |
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M. gymnocarpa | SJ980707 | Sweden | AM882866 | AM882866 |
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M. heimii | JV 14932F (WTU) | USA | – | AY380379 |
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M. latispora | EL190-08 | Not given | KR029724 | KR029724 |
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M. leucoblema | SM2324 | Sweden | GU980630 | GU980630 |
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M. leucoblema | JV2898 | Finland | HM209789 | HM209789 |
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M. leucoloma | EL41-07 | Sweden | GU980622 | GU980622 |
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M. leucoloma | Ohenoja 880810 | Svalbard | HM209786 | HM209786 |
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M. malenconii | JV23101 | Finland | HM209787 | HM209787 |
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M. malenconii | PAM98941302 | France | HM209788 | HM209788 |
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M. myriadophylla | EL121-08 | Sweden | HM209792 | HM209792 |
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M. myriadophylla | JV19678 | Finland | HM209793 | HM209793 |
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M. myriadophylla | JV5968 | Finland | HM209794 | HM209794 |
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M. myriadophylla | JV19652 | Finland | HM209791 | HM209791 |
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M. pakistanica | MSM#0061 | Pakistan | OK360951 | OK392118 | This paper |
M. pakistanica | MSM#00132 | Pakistan | OK360952 | OK392119 | This paper |
M. pakistanica | MSM#0201 | Pakistan | OK360953 | OK392120 | This paper |
M. pinicola | MSM#0060 | Pakistan | OK360954 | OK392121 | This paper |
M. pinicola | MSM#00131 | Pakistan | OK360955 | OK392122 | This paper |
M. pinicola | MSM#0200 | Pakistan | OK360956 | OK392123 | This paper |
M. substraminipes | K70-148 | USA | GU980601 | GU980601 |
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M. substraminipes | EL12-08 | USA | GU980601 | GU980601 |
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M. terrigena | EL24-08 | USA | GU980648 | GU980648 |
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M. terrigena | EL11704 | Sweden | AM882864 | AM882864 |
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M. tomentosula | TENN:071837 | USA | MG773814 | MG773814 | Unpublished |
M. velutina | MSM # 0048 | Pakistan | MK990129 | MK999927 |
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M. velutina | MSM # 0049 | Pakistan | MK990130 | MK999928 |
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M. velutina | MSM # 00050 | Pakistan | MK990131 | MK999929 |
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Most similar to Mallocybe myriadophylla described from north-western Europe, but differs by the absence of a crowded lamellae, different pileal colouration and somewhat larger basidiospores. Phylogenetically separated from other species of Mallocybe due to unique ITS and LSU sequences.
. Holotype: PAKISTAN, Prov. Khyber Pakhtunkhwa, Mansehra, Chattar Plain, under Pinus wallichiana A. B. Jacks., 22 September 2013, leg. M. Saba & A.N. Khalid; MSM#0061 (
Referring to the country where it was discovered.
Pileus 19–24 mm diam., plane; margin deflexed in mature basidiomata, not splitting; surface dull, scaly, floccose, light brown (7.5YR6/4) or pale yellowish-brown (10YR7/4). Lamellae adnexed, subdistant, margin entire, regular, concolorous, moderate brown (7.5YR3/4) or strong brown (5YR4/6), one to two tiers of lamellulae or variable. Stipe 31–35 mm, central, equal, floccose, pale yellowish-brown (5YR8/8) or pale yellow (2.5Y9/4), cortina zone not seen; annulus absent. Context pale brown, tough, up to 2 mm thick. Odour not distinctive, somewhat fungoid. Taste not recorded.
Basidiospores 7.4–13.2 × 5–6.6 µm [x = 10.8 × 5.9 µm, Q = 1.3–2.2], ellipsoid, ovoid, thin-walled, pale brown with yellowish contents in KOH. Basidia with yellowish necropigment, 25.7–36 × 6.8–10.3 µm, clavate, usually four-spored, thin-walled, hyaline in KOH; sterigmata 3.6–5.3 µm. Pleurocystidia absent. Cheilocystidia 14.8–31 × 9–15.8 µm, cylindrical, hyaline, in chains. Caulocystidia 38–43.6 × 5.5–7.0 µm, hyphal, yellowish-brown in KOH with clamp connections at base, thin-walled, abundant at the apex of stipe. Pileipellis hyphae cylindrical, pale brown in mass in KOH, 5–12 µm, thin-walled. Stipitipellis hyphae cylindrical, 6–10 µm, yellowish or olivaceous in KOH. All structures inamyloid. Clamp connections present.
Occurring in September, solitary, scattered on the forest floor in stands of Pinus wallichiana (Pinaceae).
Currently known from Western Himalayas, Pakistan.
Mallocybe pakistanica
can be characterised by small to medium-sized basidiomata, pale yellowish-brown or light brown pileus, ellipsoid basidiospores and catenate cheilocystidia (in chains). Based on the phylogenetic analysis (Fig.
Another closely-related species in the adjacent clade is Mallocybe tomentosula Matheny & Esteve-Rav., in Matheny, Hobbs & Esteve-Raventós which morphologically can be differentiated by the presence of a superior cortinate ring-zone, slightly smaller size of basidiospores and by its occurrence in eastern North America. Both ML and MP phylogenetic analyses also clearly support the identity of this new taxon as independent monophyletic clade.
Most similar to M. siciliana and M. subtomentosa, but differs by the combination of pileal colour, absence of umbo, size of basidiospores, pyriform to broadly clavate, catenate cheilocystidia and an ecological association with Pines. Phylogenetically separated from other species of Mallocybe due to unique ITS and LSU sequences.
Holotype
: PAKISTAN, Prov. Khyber Pakhtunkhwa, Mansehra, Chattar Plain, under Pinus wallichiana, 22 September 2013, leg. M. Saba & A.N. Khalid; MSM#0060, (
Referring to its exclusive association with Pinus.
Pileus 24.9–27 mm diam., plan with slight depression in centre; margin straight or flaring, not splitting; surface dull, scaly, light orange (5YR8/8) or ochre-yellowish, central disc brownish-orange (5YR5/8). Lamellae adnexed, subdistant, margin eroded, strong brown (5YR4/6) or (5YR4/8). Stipe 31–35.6 mm, central, equal, floccose or pruinose near base, light orange (5YR8/8) or moderate orange (5YR7/8), cortina zone present; annulus absent. Context pale yellow to pale brown, tough, up to 3 mm thick. Odour faint not strong. Taste not recorded.
Basidiospores (6.8–) 7.5–11 × 5–7 µm [x = 9.5 × 6.0 µm, Q = 1.1–1.8], ovoid, ellipsoid or phaseoliform, thin-walled, pale brown or golden brown in KOH. Basidia with yellowish necropigment, 27–42.4 × (5.4–) 8–12 µm, clavate, attenuated below, two to four-spored, thin-walled, hyaline in KOH; sterigmata 2.8–5.6 µm. Pleurocystidia absent. Cheilocystidia 11.8–36.5 × 11–15 µm, hyaline, pyriform to broadly clavate, in chains. Caulocystidia 22–70 × (6.3–) 7.7–14 µm, hyphal, yellowish-brown in KOH with clamp connections at base, thin-walled. Pileipellis hyphae cylindrical, hyaline singly or pale brown in mass in KOH, 5–11.3 µm, thin-walled, pileal hyphal endings 23.6–70 × 7.7–13 µm. Stipitipellis hyphae cylindrical, 5–10 µm, yellowish or olivaceous in KOH. All structures inamyloid. Clamp connections present.
Occurring in September, solitary, scattered on the forest floor in stands of Pinus wallichiana (Pinaceae).
Currently known from Western Himalayas, Pakistan.
Mallocybe pinicola
is characterised by light orange or ochre-yellowish, medium-sized pileus, absence of umbo, ovoid, ellipsoid or phaseoliform basidiospores, pyriform to broadly clavate, catenate cheilocystidia and its distribution in pine (conifer) forests. Based on the phylogenetic analysis (Fig.
Another closely-related taxa is Mallocybe subtomentosa which was originally described from the United States of America (Rouse’s Point). It resembles M. pinicola in having the entire absence of umbo, nearly similar spore size and shape of basidiospores (8–10 × 5–6 μm and ellipsoid basidiospores in M. subtomentosa). However, the presence of dark brown and minutely hairy to tomentose pileus, absence of cystidia and gregarious or subcaespitose habit in M. subtomentosa make the present species distinct from latter (
Moreover, phylogenetic analysis (ML and MP), conducted using combined dataset of ITS + LSU, showed the clear separation of our species from these two closely-related taxa and all the sequences of our species clustered together with strong statistical support (99%) forming a monophyletic clade.
Pakistan is located in southern Asia. This country is geographically diverse, ranging from the mountainous northern part, where the Himalayas meet their westernmost end, to the southern part with the coastal area along the Arabian Sea. Following the KöppenGeiger classification system for climate, 20 types can be found in Pakistan – including four arid, six temperate, eight cold and even two polar (
The multiple geographic features, different climates and plant species richness in Pakistan are suggestive of a high diversity of fungal species. In recent years, many papers have been published, describing new species from different fungal groups collected in Pakistan (e.g.
In the combined ITS and LSU phylogenetic analysis, the new species described in this study occupy independent positions. From our morphological analysis, it is obvious that both Mallocybe pakistanica and M. pinicola are separated from other closely-related Mallocybe species. With the contribution of this research work, the number of known taxa of this genus has been raised to sixty worldwide, with four from Pakistan. However, a considerable number of taxa have yet to be formally described and the number of the species will likely increase as more collections are studied from under-explored localities. A key to Mallocybe species reported from Pakistan is provided below;
1 | Basidiomata medium to large, pileus robust, ≥ 30 μm diam., cortina white | M. leucoblema |
– | Basidiomata small to medium, pileus ≤ 30 μm diam., cortina brown | 2 |
2 | Pileus surface velutinous, cheilocystidia clavate or cylindrical | M. velutina |
– | Pileus surface scaly, cheilocystidia articulated | 3 |
3 | Pileus light orange, moderate orange or brownish-orange, evenly coloured, plan, basidiospores longer and narrower | M. pakistanica |
– | Pileus light orange or ochre-yellowish with central disc slightly depressed and brownish-orange, basidiospores smaller and broader | M. pinicola |
We are highly indebted to the Higher Education Commission (HEC), Islamabad, Pakistan, for funding this project under Phase II, Batch I, Indigenous PhD fellowships programme for 5000 scholars and through International Research Support Initiative Program (IRSIP).
No conflict of interest was declared.
No ethical statement was reported.
Higher Education Commission, Pakistan.
Malka Saba: conceptualization, writing - original draft and review and editing, data curation, formal analysis, investigation, methodology and visualization. Abdul Nasir Khalid: project administration, resources and supervision. Samina Sarwar: writing - review and editing, formal analysis.
Malka Saba https://orcid.org/0000-0001-7673-2345
Abdul Nasir Khalid https://orcid.org/0000-0002-5635-8031
Samina Sarwar https://orcid.org/0000-0002-6377-4498
All holotype and paratype collections of the new species are deposited at