Research Article |
Corresponding author: Qin Yang ( T20192466@csuft.edu.cn ) Academic editor: Rungtiwa Phookamsak
© 2022 Lingxue Cao, Dun Luo, Wu Lin, Qin Yang, Xiaojun Deng.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Cao L, Luo D, Lin W, Yang Q, Deng X (2022) Four new species of Diaporthe (Diaporthaceae, Diaporthales) from forest plants in China. MycoKeys 91: 25-47. https://doi.org/10.3897/mycokeys.91.84970
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Species of Diaporthe inhabit a wide range of plant hosts as plant pathogens, endophytes and saprobes. During trips to collect forest pathogens in Beijing, Jiangxi, Shaanxi and Zhejiang Provinces in China, 16 isolates of Diaporthe were obtained from branch cankers and leaf spots. These isolates were studied by applying a polyphasic approach including morphological, cultural data, and phylogenetic analyses of the nuclear ribosomal internal transcribed spacer (ITS), calmodulin (cal), histone H3 (his3), partial translation elongation factor-1α (tef-1α) and β-tubulin (tub2) loci. Results revealed four new taxa, D. celticola, D. meliae, D. quercicola, D. rhodomyrti spp. nov. and two known species, D. eres and D. multiguttulata.
Diaporthaceae, DNA phylogeny, four new taxa, systematics, taxonomy
Diaporthe Nitschkes (syn. Phomopsis) is a large genus in the Diaporthaceae with plant pathogens, endophytes or saprobes (
The family Diaporthaceae was established by
In China, the classification of Diaporthe has been progressing and the basis for the species identification is a combination of morphological, cultural and phylogenetical analyses (
From 2018 to 2020, sample collections have been ongoing in Beijing, Jiangxi, Shaanxi and Zhejiang Provinces, China (Table
Species | Isolate | GenBank accession numbers | ||||
---|---|---|---|---|---|---|
ITS | cal | his3 | tef-1α | tub2 | ||
Diaporthe acaciigena | CBS 129521* | KC343005 | KC343247 | KC343489 | KC343731 | KC343973 |
Diaporthe acericola | MFLUCC 17-0956* | KY964224 | KY964137 | NA | KY964180 | KY964074 |
Diaporthe acerigena | CFCC 52554* | MH121489 | MH121413 | MH121449 | MH121531 | NA |
Diaporthe acerigena | CFCC 52555 | MH121490 | MH121414 | MH121450 | MH121532 | NA |
Diaporthe acuta | PSCG 047* | MK626957 | MK691125 | MK726161 | MK654802 | MK691225 |
Diaporthe acutispora | LC6161* | KX986764 | KX999274 | KX999235 | KX999155 | KX999195 |
Diaporthe alangii | CFCC 52556* | MH121491 | MH121415 | MH121451 | MH121533 | MH121573 |
Diaporthe alangii | CFCC 52557 | MH121492 | MH121416 | MH121452 | MH121534 | MH121574 |
Diaporthe albosinensis | CFCC 53066* | MK432659 | MK442979 | MK443004 | MK578133 | MK578059 |
Diaporthe albosinensis | CFCC 53067 | MK432660 | MK442980 | MK443005 | MK578134 | MK578060 |
Diaporthe alleghaniensis | CBS 495.72* | KC343007 | KC343249 | KC343491 | KC343733 | KC343975 |
Diaporthe ambigua | CBS 114015* | KC343010 | KC343252 | KC343494 | KC343736 | KC343978 |
Diaporthe ampelina | STE-U 2660 | AF230751 | AY745026 | NA | AY745056 | JX275452 |
Diaporthe amygdali | CBS 126679* | MH864208 | KC343264 | KC343506 | KC343748 | KC343990 |
Diaporthe amygdali syn. D. chongqingensis | PSCG 435 | MK626916 | MK691209 | MK726257 | MK654866 | MK691321 |
Diaporthe amygdali syn. D. fusicola | CGMCC 3.17087 | KF576281 | KF576233 | NA | KF576256 | KF576305 |
Diaporthe amygdali syn. D. garethjonesii | MFLUCC 12-0542a | KT459423 | KT459470 | NA | KT459457 | KT459441 |
Diaporthe amygdali syn. D. kadsurae | CFCC 52586 | MH121521 | MH121439 | MH121479 | MH121563 | MH121600 |
Diaporthe amygdali syn. D. kadsurae | CFCC 52587 | MH121522 | MH121440 | MH121480 | MH121564 | MH121601 |
Diaporthe amygdali syn. D. mediterranea | SAUCC194.111 | MT822639 | MT855718 | MT855606 | MT855836 | MT855951 |
Diaporthe amygdali syn. D. ovoicicola | CGMCC 3.17093 | KF576265 | KF576223 | NA | KF576240 | KF576289 |
Diaporthe amygdali syn. D. sterilis | CBS 136969 | KJ160579 | KJ160548 | MF418350 | KJ160611 | KJ160528 |
Diaporthe amygdali syn. D. ternstroemiae | CGMCC 3.15183 | KC153098 | NA | NA | KC153089 | NA |
Diaporthe anacardii | CBS 720.97* | KC343024 | KC343266 | KC343508 | KC343750 | KC343992 |
Diaporthe angelicae | CBS 111592* | KC343027 | KC343269 | KC343511 | KC343753 | KC343995 |
Diaporthe apiculata | CFCC 53068 | MK432651 | MK442973 | MK442998 | MK578127 | MK578054 |
Diaporthe apiculata | CFCC 53069 | MK432652 | MK442974 | MK442999 | MK578128 | MK578055 |
Diaporthe aquatic | IFRDCC 3051* | JQ797437 | NA | NA | NA | NA |
Diaporthe arctii | DP0482* | KJ590736 | KJ612133 | KJ659218 | KJ590776 | KJ610891 |
Diaporthe arecae | CBS 161.64* | KC343032 | KC343274 | KC343516 | KC343758 | KC344000 |
Diaporthe arengae | CBS 114979* | KC343034 | KC343276 | KC343518 | KC343760 | KC344002 |
Diaporthe arezzoensis | MFLUCC 15-0127* | MT185503 | NA | NA | NA | NA |
Diaporthe aseana | MFLUCC 12-0299a* | KT459414 | KT459464 | NA | KT459448 | KT459432 |
Diaporthe asheicola | CBS 136967* | KJ160562 | KJ160542 | NA | KJ160594 | KJ160518 |
Diaporthe aspalathi | CBS 117169* | KC343036 | KC343278 | KC343520 | KC343762 | KC344004 |
Diaporthe australafricana | CBS 111886* | KC343038 | KC343280 | KC343522 | KC343764 | KC344006 |
Diaporthe australiana | CBS 146457* | MN708222 | NA | NA | MN696522 | MN696530 |
Diaporthe baccae | CBS 136972* | KJ160565 | MG281695 | MF418264 | KJ160597 | MF418509 |
Diaporthe batatas | CBS 122.21 | KC343040 | KC343282 | KC343524 | KC343766 | KC344008 |
Diaporthe bauhiniae | CFCC 53071* | MK432648 | MK442970 | MK442995 | MK578124 | MK578051 |
Diaporthe bauhiniae | CFCC 53072 | MK432649 | MK442971 | MK442996 | MK578125 | MK578052 |
Diaporthe beilharziae | BRIP 54792* | JX862529 | NA | NA | JX862535 | KF170921 |
Diaporthe benedicti | SBen914* | KM669929 | KM669862 | NA | KM669785 | NA |
Diaporthe betulae | CFCC 50469* | KT732950 | KT732997 | KT732999 | KT733016 | KT733020 |
Diaporthe betulae | CFCC 50470 | KT732951 | KT732998 | KT733000 | KT733017 | KT733021 |
Diaporthe betulicola | CFCC 51128* | KX024653 | KX024659 | KX024661 | KX024655 | KX024657 |
Diaporthe betulicola | CFCC 51129 | KX024654 | KX024660 | KX024662 | KX024656 | KX024658 |
Diaporthe betulina | CFCC 52560* | MH121495 | MH121419 | MH121455 | MH121537 | MH121577 |
Diaporthe betulina | CFCC 52561 | MH121496 | MH121420 | MH121456 | MH121538 | MH121578 |
Diaporthe biconispora | ZJUD62* | KJ490597 | NA | KJ490539 | KJ490476 | KJ490418 |
Diaporthe biguttulata | ZJUD47* | KJ490582 | NA | KJ490524 | KJ490461 | KJ490403 |
Diaporthe bohemiae | CBS 143347* | MG281015 | MG281710 | MG281361 | MG281536 | MG281188 |
Diaporthe brasiliensis | CBS 133183* | KC343042 | KC343284 | KC343526 | KC343768 | KC344010 |
Diaporthe caatingaensis | URM7486* | KY085927 | KY115597 | KY115605 | KY115603 | KY115600 |
Diaporthe camelliae-sinensis | SAUCC194.92* | MT822620 | MT855699 | MT855588 | MT855932 | MT855817 |
Diaporthe canthi | CPC 19740* | JX069864 | KC843174 | NA | KC843120 | KC843230 |
Diaporthe caryae | CFCC 52563* | MH121498 | MH121422 | MH121458 | MH121540 | MH121580 |
Diaporthe caryae | CFCC 52564 | MH121499 | MH121423 | MH121459 | MH121541 | MH121581 |
Diaporthe cassines | CPC 21916* | KF777155 | NA | NA | KF777244 | NA |
Diaporthe caulivora | CBS 127268* | MH864501 | KC343287 | KC343529 | KC343771 | KC344013 |
Diaporthe celticola | CFCC 53074* | MK573948 | MK574587 | MK574603 | MK574623 | MK574643 |
Diaporthe celticola | CFCC 53075 | MK573949 | MK574588 | MK574604 | MK574624 | MK574644 |
Diaporthe celticola | CFCC 53076 | MK573950 | MK574589 | MK574605 | MK574625 | MK574645 |
Diaporthe cercidis | CFCC 52565* | MH121500 | MH121424 | MH121460 | MH121542 | MH121582 |
Diaporthe cercidis | CFCC 52566 | MH121501 | MH121425 | MH121461 | MH121543 | MH121583 |
Diaporthe chamaeropis | CBS 454.81* | KC343048 | KC343290 | KC343532 | KC343774 | KC344016 |
Diaporthe charlesworthii | BRIP 54884m* | KJ197288 | NA | NA | KJ197250 | KJ197268 |
Diaporthe chensiensis | CFCC 52567* | MH121502 | MH121426 | MH121462 | MH121544 | MH121584 |
Diaporthe chensiensis | CFCC 52568 | MH121503 | MH121427 | MH121463 | MH121545 | MH121585 |
Diaporthe chrysalidocarpi | SAUCC194.35* | MT822563 | MT855646 | MT855532 | MT855760 | MT855876 |
Diaporthe cichorii | MFLUCC 17-1023* | KY964220 | KY964133 | NA | KY964176 | KY964104 |
Diaporthe cinnamomi | CFCC 52569* | MH121504 | NA | MH121464 | MH121546 | MH121586 |
Diaporthe cinnamomi | CFCC 52570 | MH121505 | NA | MH121465 | MH121547 | MH121587 |
Diaporthe cissampeli | CPC 27302* | KX228273 | NA | KX228366 | NA | KX228384 |
Diaporthe citri | AR3405* | KC843311 | KC843157 | KJ420881 | KC843071 | KC843187 |
Diaporthe citri | CFCC 53079 | MK573940 | MK574579 | MK574595 | MK574615 | MK574635 |
Diaporthe citriasiana | CGMCC 3.15224* | JQ954645 | KC357491 | KJ490515 | JQ954663 | KC357459 |
Diaporthe citrichinensis | CGMCC 3.15225* | JQ954648 | KC357494 | KJ420880 | JQ954666 | KJ490396 |
Diaporthe collariana | MFLU 17-2770* | MG806115 | MG783042 | NA | MG783040 | MG783041 |
Diaporthe compactum | LC3083* | KP267854 | NA | KP293508 | KP267928 | KP293434 |
Diaporthe conica | CFCC 52571* | MH121506 | MH121428 | MH121466 | MH121548 | MH121588 |
Diaporthe conica | CFCC 52572 | MH121507 | MH121429 | MH121467 | MH121549 | MH121589 |
Diaporthe constrictospora | CGMCC 3.20096* | MT385947 | MT424718 | MW022487 | MT424682 | MT424702 |
Diaporthe convolvuli | CBS 124654 | KC343054 | KC343296 | KC343538 | KC343780 | KC344022 |
Diaporthe coryli | CFCC 53083* | MK432661 | MK442981 | MK443006 | MK578135 | MK578061 |
Diaporthe coryli | CFCC 53084 | MK432662 | MK442982 | MK443007 | MK538176 | MK578062 |
Diaporthe corylicola | CFCC 53986* | MW839880 | MW836684 | MW836717 | MW815894 | MW883977 |
Diaporthe corylicola | CFCC 53987 | MW839867 | MW836685 | MW836718 | MW815895 | MW883978 |
Diaporthe crotalariae | CBS 162.33* | MH855395 | JX197439 | KC343540 | GQ250307 | KC344024 |
Diaporthe crousii | CAA 823* | MK792311 | MK883835 | MK871450 | MK828081 | MK837932 |
Diaporthe cucurbitae | DAOM 42078* | KM453210 | NA | KM453212 | KM453211 | KP118848 |
Diaporthe cuppatea | CBS 117499 | MH863021 | KC343299 | KC343541 | KC343783 | KC344025 |
Diaporthe cynaroidis | CBS 122676* | KC343058 | KC343300 | KC343542 | KC343784 | KC344026 |
Diaporthe cytosporella | FAU461 | KC843307 | KC843141 | MF418283 | KC843116 | KC843221 |
Diaporthe diospyricola | CPC 21169* | KF777156 | NA | NA | NA | NA |
Diaporthe discoidispora | ZJUD89* | KJ490624 | NA | KJ490566 | KJ490503 | KJ490445 |
Diaporthe dorycnii | MFLUCC 17-1015* | KY964215 | NA | NA | KY964171 | KY964099 |
Diaporthe drenthii | CBS 146453* | MN708229 | NA | NA | MN696526 | MN696537 |
Diaporthe durionigena | VTCC 930005* | MN453530 | NA | NA | MT276157 | MT276159 |
Diaporthe elaeagni-glabrae | LC4802* | KX986779 | KX999281 | KX999251 | KX999171 | KX999212 |
Diaporthe endophytica | CBS 133811* | KC343065 | KC343307 | KC343549 | KC343791 | KC344033 |
Diaporthe eres | AR5193* | KJ210529 | KJ434999 | KJ420850 | KJ210550 | KJ420799 |
Diaporthe eres | AR5211 | KJ210538 | KJ435043 | KJ420875 | KJ210559 | KJ420828 |
Diaporthe eres | CBS 587.79 | KC343153 | KC343395 | KC343637 | KC343879 | KC344121 |
Diaporthe eres | CFCC 52575 | MH121510 | NA | MH121470 | MH121552 | MH121592 |
Diaporthe eres | CFCC 52576 | MH121511 | MH121432 | MH121471 | MH121553 | MH121593 |
Diaporthe eres | CFCC 52577 | MH121512 | MH121433 | MH121472 | MH121554 | MH121594 |
Diaporthe eres | CFCC 52578 | MH121513 | MH121434 | MH121473 | MH121555 | MH121595 |
Diaporthe eres | CFCC 52579 | MH121514 | NA | MH121474 | MH121556 | NA |
Diaporthe eres | CFCC 52580 | MH121515 | NA | MH121475 | MH121557 | MH121596 |
Diaporthe eres | CFCC 52581 | MH121516 | NA | MH121476 | MH121558 | MH121597 |
Diaporthe eres | CGMCC 3.15181 | KC153096 | NA | NA | KC153087 | KF576312 |
Diaporthe eres | CGMCC 3.17081 | KF576282 | NA | NA | KF576257 | KF576306 |
Diaporthe eres | CGMCC 3.17089 | KF576267 | NA | NA | KF576242 | KF576291 |
Diaporthe eres | DAOM 695742 | KU552025 | NA | NA | KU552023 | KU574615 |
Diaporthe eres | MAFF 625034 | JQ807469 | KJ435023 | KJ420868 | JQ807418 | KJ420819 |
Diaporthe eres | MFLU 17-0646 | MG828895 | MG829274 | NA | MG829270 | MG843877 |
Diaporthe eres | MFLUCC 16-0113 | KU557563 | KU557611 | NA | KU557631 | KU557587 |
Diaporthe eres | MFLUCC 17-0963 | KY964190 | KY964116 | NA | KY964146 | KY964073 |
Diaporthe eres syn. D. alnea | CBS 146.46 | KC343008 | KC343250 | KC343492 | KC343734 | KC343976 |
Diaporthe eres syn. D. camptothecicola | CFCC 51632 | KY203726 | KY228877 | KY228881 | KY228887 | KY228893 |
Diaporthe eres syn. D. celastrina | CBS 139.27 | KC343047 | KC343289 | KC343531 | KC343773 | KC344015 |
Diaporthe eres syn. D. celeris | CBS 143349 | MG281017 | MG281712 | MG281363 | MG281538 | MG281190 |
Diaporthe eres syn.D. ellipicola | CGMCC 3.17084 | KF576270 | NA | NA | KF576245 | KF576294 |
Diaporthe eres syn. D. neilliae | CBS 144.27 | KC343144 | KC343386 | KC343628 | KC343870 | KC344112 |
Diaporthe eres syn. D. pulla | CBS 338.89 | KC343152 | KC343394 | KC343636 | KC343878 | KC344120 |
Diaporthe eres | CSUFTCC101 | ON076564 | NA | ON081664 | ON081656 | NA |
Diaporthe eres | CSUFTCC102 | ON076565 | NA | ON081665 | ON081657 | NA |
Diaporthe eres | CSUFTCC103 | ON076566 | NA | ON081666 | ON081658 | NA |
Diaporthe eucalyptorum | CBS 132525* | MH305525 | NA | NA | NA | NA |
Diaporthe foeniculacea | CBS 111553* | KC343101 | KC343343 | KC343585 | KC343827 | KC344069 |
Diaporthe fraxini-angustifoliae | BRIP 54781* | JX862528 | NA | NA | JX862534 | KF170920 |
Diaporthe fraxinicola | CFCC 52582* | MH121517 | MH121435 | NA | MH121559 | NA |
Diaporthe fraxinicola | CFCC 52583 | MH121518 | MH121436 | NA | MH121560 | NA |
Diaporthe fructicola | MAFF 246408* | LC342734 | LC342738 | LC342737 | LC342735 | LC342736 |
Diaporthe fulvicolor | PSCG 051* | MK626859 | MK691132 | MK726163 | MK654806 | MK691236 |
Diaporthe ganjae | CBS 180.91* | KC343112 | KC343354 | KC343596 | KC343838 | KC344080 |
Diaporthe ganzhouensis | CFCC 53087* | MK432665 | MK442985 | MK443010 | MK578139 | MK578065 |
Diaporthe ganzhouensis | CFCC 53088 | MK432666 | MK442986 | MK443011 | MK578140 | MK578066 |
Diaporthe goulteri | BRIP 55657a* | KJ197290 | NA | NA | KJ197252 | KJ197270 |
Diaporthe grandiflori | SAUCC194.84* | MT822612 | MT855691 | MT855580 | MT855809 | MT855924 |
Diaporthe guangxiensis | JZB320087 | MK335765 | MK736720 | NA | MK500161 | MK523560 |
Diaporthe gulyae | BRIP 54025 | JF431299 | NA | NA | JN645803 | KJ197271 |
Diaporthe guttulata | CGMCC 3.20100* | MT385950 | MW022470 | MW022491 | MT424685 | MT424705 |
Diaporthe helianthi | CBS 592.81* | KC343115 | KC343357 | KC343599 | KC343841 | KC344083 |
Diaporthe heliconiae | SAUCC194.77* | MT822605 | MT855684 | MT855573 | MT855802 | MT855917 |
Diaporthe heterophyllae | CPC 26215* | MG600222 | MG600218 | MG600220 | MG600224 | MG600226 |
Diaporthe heterostemmatis | SAUCC194.85* | MT822613 | MT855692 | MT855581 | MT855810 | MT855925 |
Diaporthe hickoriae | CBS 145.26* | KC343118 | KC343360 | KC343620 | KC343844 | KC344086 |
Diaporthe hispaniae | CBS 143351* | MG281123 | MG281820 | MG281471 | MG281644 | MG281296 |
Diaporthe hongkongensis | CBS 115448* | KC343119 | KC343361 | KC343603 | KC343845 | KC344087 |
Diaporthe hubeiensis | JZB320123* | MK335809 | MK500235 | NA | MK523570 | MK500148 |
Diaporthe incomplete | LC6754* | KX986794 | KX999289 | KX999265 | KX999186 | KX999226 |
Diaporthe inconspicua | CBS 133813* | KC343123 | KC343365 | KC343607 | KC343849 | KC344091 |
Diaporthe infecunda | CBS 133812* | KC343126 | KC343368 | KC343610 | KC343852 | KC344094 |
Diaporthe irregularis | CGMCC 3.20092* | MT385951 | MT424721 | NA | MT424686 | MT424706 |
Diaporthe isoberliniae | CPC 22549* | KJ869190 | NA | NA | NA | KJ869245 |
Diaporthe juglandicola | CFCC 51134* | KU985101 | KX024616 | KX024622 | KX024628 | KX024634 |
Diaporthe kochmanii | BRIP 54033* | JF431295 | NA | NA | JN645809 | NA |
Diaporthe kongii | BRIP 54031* | JF431301 | NA | NA | JN645797 | KJ197272 |
Diaporthe krabiensis | MFLUCC 17-2481* | MN047100 | NA | NA | MN433215 | MN431495 |
Diaporthe lenispora | CGMCC 3.20101* | MT385952 | MW022472 | MW022493 | MT424687 | MT424707 |
Diaporthe litchicola | BRIP 54900* | JX862533 | NA | NA | JX862539 | KF170925 |
Diaporthe litchi | SAUCC194.22* | MT822550 | MT855635 | MT855519 | MT855747 | MT855863 |
Diaporthe lithocarpi | CGMCC 3.15175* | KC135104 | KF576235 | NA | KC153095 | KF576311 |
Diaporthe longicolla | FAU599 | KJ590728 | KJ612124 | KJ659188 | KJ590767 | KJ610883 |
Diaporthe longispora | CBS 194.36* | MH855769 | KC343377 | KC343619 | KC343861 | KC344103 |
Diaporthe lusitanicae | CBS 123212* | MH863279 | KC343378 | KC343620 | KC343862 | KC344104 |
Diaporthe lutescens | SAUCC194.36* | MT822564 | MT855647 | MT855533 | MT855761 | MT855877 |
Diaporthe macadamiae | CBS 146455* | MN708230 | NA | NA | MN696528 | MN696539 |
Diaporthe macintoshii | BRIP 55064a* | KJ197289 | NA | NA | KJ197251 | KJ197269 |
Diaporthe malorum | CAA 734* | KY435638 | KY435658 | KY435648 | KY435627 | KY435668 |
Diaporthe marina | MFLU 17-2622* | MN047102 | NA | NA | NA | NA |
Diaporthe masirevicii | BRIP 54256* | KJ197276 | NA | NA | KJ197238 | KJ197256 |
Diaporthe mayteni | CBS 133185* | KC343139 | KC343381 | KC343623 | KC343865 | KC344107 |
Diaporthe maytenicola | CPC 21896* | KF777157 | NA | NA | NA | KF777250 |
Diaporthe melastomatis | SAUCC194.55* | MT822583 | MT855664 | MT855551 | MT855780 | MT855896 |
Diaporthe melonis | CBS 435.87 | KC343141 | KC343383 | KC343625 | KC343867 | KC344109 |
Diaporthe meliae | CFCC 53089* | MK432657 | NA | ON081662 | ON081654 | MK578057 |
Diaporthe meliae | CFCC 53090 | MK432658 | NA | ON081663 | ON081655 | MK578058 |
Diaporthe middletonii | BRIP 54884e* | KJ197286 | NA | NA | KJ197248 | KJ197266 |
Diaporthe minima | CGMCC 3.20097* | MT385953 | MT424722 | MW022496 | MT424688 | MT424708 |
Diaporthe minusculata | CGMCC 3.20098* | MT385957 | MW022475 | MW022499 | MT424692 | MT424712 |
Diaporthe miriciae | BRIP 54736j* | KJ197282 | NA | NA | KJ197244 | KJ197262 |
Diaporthe multigutullata | CFCC 53095 | MK432645 | MK442967 | MK442992 | MK578121 | MK578048 |
Diaporthe multigutullata | CFCC 53096 | MK432646 | MK442968 | MK442993 | MK578122 | MK578049 |
Diaporthe multigutullata | CFCC 53098 | MK573957 | MK574592 | MK574612 | MK574632 | MK574652 |
Diaporthe multigutullata | CFCC 53099 | MK573958 | MK574593 | MK574613 | MK574633 | MK574653 |
Diaporthe multigutullata | CFCC 53100 | MK573959 | MK574594 | MK574614 | MK574634 | MK574654 |
Diaporthe musigena | CBS 129519* | KC343143 | KC343385 | KC343267 | KC343869 | KC344111 |
Diaporthe myracrodruonis | URM 7972 | MK205289 | MK205290 | NA | MK213408 | MK205291 |
Diaporthe neoarctii | CBS 109490* | KC343145 | KC343387 | KC343629 | KC343871 | KC344113 |
Diaporthe neoraonikayaporum | MFLUCC 14-1136* | KU712449 | KU749356 | NA | KU749369 | KU743988 |
Diaporthe nothofagi | BRIP 54801* | JX862530 | NA | NA | JX862536 | KF170922 |
Diaporthe novem | CBS 127269 | KC343155 | KC343397 | KC343639 | KC343881 | KC344123 |
Diaporthe ocoteae | CPC 26217* | KX228293 | NA | NA | NA | KX228388 |
Diaporthe oraccinii | LC3166* | KP267863 | NA | KP293517 | KP267937 | KP293443 |
Diaporthe ovalispora | ZJUD93* | KJ490628 | NA | KJ490570 | KJ490507 | KJ490449 |
Diaporthe oxe | CBS 133186* | KC343164 | KC343406 | KC343648 | KC343890 | KC344132 |
Diaporthe padina | CFCC 52590* | MH121525 | MH121443 | MH121483 | MH121567 | MH121604 |
Diaporthe padina | CFCC 52591 | MH121526 | MH121444 | MH121484 | MH121568 | MH121605 |
Diaporthe pandanicola | MFLUCC 17-0607* | MG646974 | NA | NA | NA | MG646930 |
Diaporthe paranensis | CBS 133184* | KC343171 | KC343413 | KC343655 | KC343897 | KC344139 |
Diaporthe parapterocarpi | CPC 22729 | KJ869138 | NA | NA | NA | KJ869248 |
Diaporthe parvae | PSCG 035 | MK626920 | MK691169 | MK726211 | MK654859 | MK691249 |
Diaporthe pascoei | BRIP 54847* | JX862538 | NA | NA | JX862538 | KF170924 |
Diaporthe passiflorae | CPC 19183* | JX069860 | KY435644 | KY435654 | KY435623 | KY435674 |
Diaporthe passifloricola | CPC 27480* | KX228292 | NA | KX228367 | NA | KX228387 |
Diaporthe penetriteum | LC3215 | KP267879 | NA | KP293532 | KP267953 | NA |
Diaporthe perjuncta | CBS 109745* | KC343172 | KC343414 | KC343656 | KC343898 | KC344140 |
Diaporthe perseae | CBS 151.73 | KC343173 | KC343415 | KC343657 | KC343899 | KC343141 |
Diaporthe pescicola | MFLUCC 16-0105* | KU557555 | KU557603 | NA | KU557623 | KU557579 |
Diaporthe phaseolorum | AR4203* | KJ590738 | KJ612135 | KJ659220 | KJ590739 | KJ610893 |
Diaporthe phillipsii | CAA 817* | MK792305 | MK883831 | MK871445 | MK828076 | MN000351 |
Diaporthe podocarpi-macrophylli | LC6155* | KX986774 | KX999278 | KX999246 | KX999167 | KX999207 |
Diaporthe pometiae | SAUCC194.72* | MT822600 | MT855679 | MT855568 | MT855797 | MT855912 |
Diaporthe pseudoalnea | CFCC 54190* | MZ727037 | MZ753468 | MZ781302 | MZ816343 | MZ753487 |
Diaporthe pseudomangiferae | CBS 101339* | KC343181 | KC343423 | KC343665 | KC343907 | KC344149 |
Diaporthe pseudophoenicicola | CBS 176.77 | KC343183 | KC343425 | KC343667 | KC343909 | KC344151 |
Diaporthe pseudotsugae | MFLU 15-3228* | KY964225 | KY964138 | NA | KY964181 | KY964108 |
Diaporthe psoraleae | CPC 21634* | KF777158 | NA | NA | KF777245 | KF777251 |
Diaporthe psoraleae-pinnatae | CPC 21638* | KF777159 | NA | NA | NA | KF777252 |
Diaporthe pterocarpi | MFLUCC 10-0575* | JQ619901 | JX197453 | NA | JX275418 | NA |
Diaporthe pterocarpicola | MFLUCC 10-0580a* | JQ619887 | JX197433 | NA | JX275403 | JX275441 |
Diaporthe pungensis | SAUCC194.112* | MT822640 | MT855719 | MT855607 | MT855837 | MT855952 |
Diaporthe pyracanthae | CAA483 | KY435635 | KY435656 | KY435645 | KY435625 | KY435666 |
Diaporthe quercicola | CSUFTCC104* | ON076567 | ON081670 | ON081667 | ON081659 | NA |
Diaporthe quercicola | CSUFTCC105 | ON076568 | ON081671 | ON081668 | ON081660 | NA |
Diaporthe quercicola | CSUFTCC106 | ON076569 | ON081672 | ON081669 | ON081661 | NA |
Diaporthe racemosae | CPC 26646* | MG600223 | MG600219 | MG600221 | MG600225 | MG600227 |
Diaporthe raonikayaporum | CBS 133182* | KC343188 | KC343430 | KC343672 | KC343914 | KC344156 |
Diaporthe ravennica | MFLUCC 16-0997 | NA | NA | NA | MT394670 | NA |
Diaporthe rhodomyrti | CFCC 53101* | MK432643 | MK442965 | MK442990 | MK578119 | MK578046 |
Diaporthe rhodomyrti | CFCC 53102 | MK432644 | MK442966 | MK442991 | MK578120 | MK578047 |
Diaporthe rhusicola | CPC 18191* | JF951146 | KC843124 | NA | KC843100 | KC843205 |
Diaporthe rosae | MFLUCC 17-2658* | MG828894 | MG829273 | NA | NA | MG843878 |
Diaporthe rosiphthora | COAD 2914 | MT311197 | MT313691 | NA | MT313693 | NA |
Diaporthe rossmaniae | CAA 762* | MK792290 | MK883822 | MK871432 | MK828063 | MK837914 |
Diaporthe rostrata | CFCC 50062* | KP208847 | KP208849 | KP208851 | KP208853 | KP208855 |
Diaporthe rostrata | CFCC 50063 | KP208848 | KP208850 | KP208852 | KP208854 | KP208856 |
Diaporthe rudis | AR3422 | KC843331 | KC843146 | NA | KC843090 | KC843177 |
Diaporthe saccarata | CBS 116311* | KC343190 | KC343432 | KC343674 | KC343916 | KC344158 |
Diaporthe sackstonii | BRIP 54669b* | KJ197287 | NA | NA | KJ197249 | KJ197267 |
Diaporthe salicicola | BRIP 54825* | JX862531 | NA | NA | JX862537 | KF170923 |
Diaporthe sambucusii | CFCC 51986* | KY852495 | KY852499 | KY852503 | KY852507 | KY852511 |
Diaporthe sambucusii | CFCC 51987 | KY852496 | KY852500 | KY852504 | KY852508 | KY852512 |
Diaporthe schimae | CFCC 53103* | MK442640 | MK442962 | MK442987 | MK578116 | MK578043 |
Diaporthe schimae | CFCC 53104 | MK442641 | MK442963 | MK442988 | MK578117 | MK578044 |
Diaporthe schini | CBS 133181* | KC343191 | KC343433 | KC343675 | KC343917 | KC344159 |
Diaporthe schisandrae | CFCC 51988* | KY852497 | KY852501 | KY852505 | KY852509 | KY852513 |
Diaporthe schisandrae | CFCC 51989 | KY852498 | KY852502 | KY852506 | KY852510 | KY852514 |
Diaporthe schoeni | MFLU 15-1279* | KY964226 | KY964139 | NA | KY964182 | KY964109 |
Diaporthe sclerotioides | CBS 296.67* | MH858974 | KC343435 | KC343677 | KC343919 | KC344161 |
Diaporthe searlei | CBS 146456* | MN708231 | NA | NA | NA | MN696540 |
Diaporthe sennae | CFCC 51636* | KY203724 | KY228875 | NA | KY228885 | KY228891 |
Diaporthe sennae | CFCC 51637 | KY203725 | KY228876 | NA | KY228886 | KY228892 |
Diaporthe sennicola | CFCC 51634* | KY203722 | KY228873 | KY228879 | KY228883 | KY228889 |
Diaporthe sennicola | CFCC 51635 | KY203723 | KY228874 | KY228880 | KY228884 | KY228890 |
Diaporthe serafiniae | BRIP 55665a* | KJ197274 | NA | NA | KJ197236 | KJ197254 |
Diaporthe shaanxiensis | CFCC 53106* | MK432654 | MK442976 | MK443001 | MK578130 | NA |
Diaporthe shaanxiensis | CFCC 53107 | MK432655 | MK432977 | MK432002 | MK578131 | NA |
Diaporthe siamensis | MFLUCC 10-0573a* | JQ619879 | JX197423 | NA | JX275393 | JX275429 |
Diaporthe silvicola | CFCC 54191* | MZ727041 | MZ753472 | MZ753481 | MZ816347 | MZ753491 |
Diaporthe sojae | FAU635 | KJ590719 | KJ612116 | KJ659208 | KJ590762 | KJ610875 |
Diaporthe spartinicola | CPC 24951* | KR611879 | NA | KR857696 | NA | KR857695 |
Diaporthe spinosa | PSCG 383* | MK626849 | MK691129 | MK726156 | MK654811 | MK691234 |
Diaporthe stictica | CBS 370.54 | KC343212 | KC343454 | KC343696 | KC343938 | KC344180 |
Diaporthe subclavata | ZJUD95* | KJ490630 | NA | KJ490572 | KJ490509 | KJ490451 |
Diaporthe subcylindrospora | KUMCC 17-0151 | MG746629 | NA | NA | MG746630 | MG746631 |
Diaporthe subellipicola | KUMCC 17-0153* | MG746632 | NA | NA | MG746633 | MG746634 |
Diaporthe subordinaria | CBS 464.90 | KC343214 | KC343456 | KC343698 | KC343940 | KC344182 |
Diaporthe taoicola | MFLUCC 16-0117* | KU557567 | NA | NA | KU557635 | KU557591 |
Diaporthe tectonae | MFLUCC 12-0777* | KU712430 | KU749345 | NA | KU749359 | KU743977 |
Diaporthe tectonendophytica | MFLUCC 13-0471* | KU712439 | KU749354 | NA | KU749367 | KU743986 |
Diaporthe tectonigena | LC6512 | KX986782 | KX999284 | KX999254 | KX999174 | KX999214 |
Diaporthe terebinthifolii | CBS 133180* | KC343216 | KC343458 | KC343700 | KC343942 | KC344184 |
Diaporthe thunbergii | MFLUCC 10-0576a* | JQ619893 | JX197440 | NA | JX275409 | JX275449 |
Diaporthe thunbergiicola | MFLUCC 12-0033* | KP715097 | NA | NA | KP715098 | NA |
Diaporthe tibetensis | CFCC 51999* | MF279843 | MF279888 | MF279828 | MF279858 | MF279873 |
Diaporthe tibetensis | CFCC 52000 | MF279844 | MF279889 | MF279829 | MF279859 | MF279874 |
Diaporthe torilicola | MFLUCC 17-1051* | KY964212 | KY964127 | NA | KY964168 | KY964096 |
Diaporthe toxica | CBS 534.93* | KC343220 | KC343462 | KC343704 | KC343946 | KC344188 |
Diaporthe tulliensis | BRIP 62248a* | KR936130 | NA | NA | KR936133 | KR936132 |
Diaporthe ueckerae | FAU656* | KJ590726 | KJ612122 | KJ659215 | KJ590747 | KJ610881 |
Diaporthe ukurunduensis | CFCC 52592* | MH121527 | MH121445 | MH121485 | MH121569 | NA |
Diaporthe ukurunduensis | CFCC 52593 | MH121528 | MH121446 | MH121486 | MH121570 | NA |
Diaporthe undulate | LC6624* | KX986798 | NA | KX999269 | KX999190 | KX999230 |
Diaporthe unshiuensis | CFCC 52594 | MH121529 | MH121447 | MH121487 | MH121571 | MH121606 |
Diaporthe unshiuensis | CFCC 52595 | MH121530 | MH121448 | MH121488 | MH121572 | MH121607 |
Diaporthe vaccinii | CBS 160.32* | KC343228 | KC343470 | KC343712 | KC343954 | KC343196 |
Diaporthe vangueriae | CBS 137985* | KJ869137 | NA | NA | NA | KJ869247 |
Diaporthe vawdreyi | BRIP 57887a* | KR936126 | NA | NA | KR936129 | KR936128 |
Diaporthe velutina | LC4421 | KX986790 | NA | KX999261 | KX999182 | KX999223 |
Diaporthe verniciicola | CFCC 53109* | MK573944 | MK574583 | MK574599 | MK574619 | MK574639 |
Diaporthe verniciicola | CFCC 53110 | MK573945 | MK574584 | MK574600 | MK574620 | MK574640 |
Diaporthe viniferae | JZB320071 | MK341551 | MK500119 | NA | MK500107 | MK500112 |
Diaporthe virgiliae | CMW 40748 | KP247556 | NA | NA | NA | KP247575 |
Diaporthe xishuangbanica | LC6707* | KX986783 | NA | KX999255 | KX999175 | KX999216 |
Diaporthe xunwuensis | CFCC 53085* | MK432663 | MK442983 | MK443008 | MK578137 | MK578063 |
Diaporthe xunwuensis | CFCC 53086 | MK432664 | MK442984 | MK443009 | MK578138 | MK578064 |
Diaporthe yunnanensis | LC6168* | KX986796 | KX999290 | KX999267 | KX999188 | KX999228 |
Diaporthe zaobaisu | PSCG 031* | MK626922 | NA | MK726207 | MK654855 | MK691245 |
Diaporthella corylina | CBS 121124* | KC343004 | KC343246 | KC343488 | KC343730 | KC343972 |
A total of 16 isolates from host material were obtained by removing a mucoid conidia mass from conidiomata, spreading the suspension on the surface of 1.8% potato dextrose agar (PDA), and incubating at 25 °C for up to 24 h. Single germinating conidium was removed and plated onto fresh PDA plates.
Specimens were deposited in the Museums of the Beijing Forestry University (
Agar plugs (6 mm diam) were taken from the edge of actively growing cultures on PDA and transferred onto the centre of 9 cm diam Petri dishes containing 2% tap water agar supplemented with sterile pine needles (PNA) (
Genomic DNA was extracted from colonies grown on cellophane-covered PDA using a CTAB [cetyltrimethylammonium bromide] method (
The quality of our amplified nucleotide sequences was checked and combined by SeqMan v.7.1.0 and reference sequences (Table
The sequence datasets for the ITS, cal, his3, tef-1α and tub2, were analysed in combination to infer the interspecific relationships within Diaporthe. The combined species phylogeny of the Diaporthe isolates consisted of 303 sequences, including the outgroup Diaporthella corylina (CBS 121124). A total of 2535 characters including gaps (512 for ITS, 524 for cal, 525 for his3, 463 for tef-1α, and 511 for tub2) were included in the phylogenetic analysis. Similar tree topologies were obtained by ML and BI methods, and the best scoring ML tree is shown in Fig.
Phylogram of Diaporthe resulting from a maximum likelihood analysis based on combined ITS, cal, his3, tef-1α and tub2. The tree is rooted with Diaporthella corylina. Values above the branches indicate Maximum Likelihood bootstrap (left, ML BP ≥ 75%) and Bayesian probabilities (right, BI PP ≥ 0.95). Strains in current study are in blue and the ex-type cultures are in bold.
Distinguished from the other Diaporthe species based on DNA sequence data and characterised by conidiomata with single necks erumpent through the host bark.
Named after the host genus on which it was collected, Celtis.
Conidiomata pycnidial, 535–605 × 210–225 μm diam, solitary and with single necks erumpent through host bark. Ectostromatic disc brown, one ostiole per disc, with yellowish cream conidial drops exuding from the ostioles. Tissue around the neck is cylindrical. Locule circular, undivided, 350–375 μm diam. Conidiophores reduced to conidiogenous cells. Conidiogenous cells unbranched, straight or sinuous, apical or base sometimes swelling, (8–)10.5–13(–14.5) × 1–1.5 μm (n = 30), L/W = 8.5–10.5. Alpha conidia hyaline, aseptate, ellipsoidal, biguttulate, (5–)6–7 × 3.5–4 μm (n = 30), L/W = 1.5–1.8. Beta conidia not observed.
Colony originally flat with white fluffy aerial mycelium, becoming light brown to olive-green mycelium with age, marginal area irregularly, with yellowish cream conidial drops exuding from the ostioles.
China, Zhejiang Province: Hanzhou City, on branches of Celtis vandervoetiana, 12 May 2018, Q. Yang & Y.M. Liang (holotype
Three strains representing Diaporthe celticola cluster in a well-supported clade (ML/BI = 100/1), and appear closely related to D. acaciigena. Diaporthe celticola can be distinguished based on ITS, cal, his3, tef-1α, and tub2 loci from D. acaciigena (29/473 in ITS, 68/442 in cal, 53/460 in his3, 79/330 in tef-1α, and 49/415 in tub2). Morphologically, D. celticola is characterised by conidiomata with single necks erumpent through the host bark and can be distinguished from D. acaciigena by smaller alpha conidia (6–7 × 3.5–4 vs. 10–11 × 6–6.5 μm) (
See
China. Beijing: Pinggu District, on branches of Populus × xiaohei, 10 July 2020, Q. Yang (CSUFT101; living cultures: CSUFTCC101, CSUFTCC102, and CSUFTCC103).
Diaporthe eres is the type species of the genus and was originally described by
Distinguished from the phylogenetically closely-related species, D. podocarpi-macrophylli, in shorter alpha conidia.
Named after the host genus on which it was collected, Melia.
Conidiomata pycnidial, immersed in the host bark, scattered, erumpent through the bark surface, discoid, with a single locule. Ectostromatic disc dark brown, one ostiole per disc, (325–)330–375(–385) μm (n = 30) diam. Locule undivided, 420–640 × 385–515 μm (n = 30). Conidiophores reduced to conidiogenous cells. Conidiogenous cells (13.5–)15–26.5(–28) × 1.3–2.1(–2.3) μm (n = 30), L/W = 8.5–15.5, cylindrical, hyaline, branched, straight or slightly curved, tapering towards the apex. Alpha conidia hyaline, aseptate, fusiform, multi-guttulate, (6.7–)8–9.5(–10) × (2–)2.1–2.3 μm (n = 30), L/W = 3.4–4.5. Beta conidia not observed.
Colony originally flat with white felty aerial mycelium, becoming auburn furcate mycelium with age, with irregular margin, conidiomata absent.
China, Shandong Province: Rizhao City, on branches of Melia azedarach, 20 April 2018, N. Jiang (holotype
Two strains representing Diaporthe meliae cluster in a well-supported clade (ML/BI = 100/1), and appear closely related to D. podocarpi-macrophylli. Diaporthe meliae can be distinguished based on ITS, his3, tef-1α, and tub2 loci from D. podocarpi-macrophylli (4/459 in ITS, 15/455 in his3, 25/349 in tef-1α, and 14/401 in tub2). Morphologically, D. meliae can be distinguished from D. podocarpi-macrophylli by its longer conidiogenous cells (15–26.5 vs. 6–18 μm) and alpha conidia (8–9.5 vs. 3.5–8.5 μm) (
See
China, Jiangxi Province: Ganzhou City, on branches of Citrus maxima, 11 May 2018, Q. Yang, & Y.M. Liang (
Diaporthe multiguttulata is characterised by ellipsoidal alpha conidia with one large guttulate, and was originally described as an endophyte from healthy branch of Citrus grandis in Fujian Province, China (
Named after the host genus on which it was collected, Quercus.
On PDA: Conidiomata pycnidial, 250–330 μm diam, globose, solitary or aggregated, deeply embedded in the medium, erumpent, single or clustered in groups of 3–5 pycnidia, coated with hyphae, cream to yellowish translucent conidial droplets exuded from the ostioles. Conidiophores reduced to conidiogenous cells. Conidiogenous cells hyaline, cylindrical, unbranched, straight, tapering towards the apex, (17–)20–26(–34.5) × 2.5–3.5 μm (n = 30), L/W = 6.5–9. Alpha conidia (6.5–)7–8.5(–9) × (1.5–)2–3 μm (n = 30), L/W = 3–4.5, aseptate, hyaline, fusiform, apex at both ends, eguttulate. Beta conidia hyaline, aseptate, filiform, straight or sinuous at one end, eguttulate, (21.5–)25.5–31(–33) × 1 µm (n = 30), L/W = 22.5–31.5.
Colony at first white, becoming dark brown with age. Aerial mycelium white, dense, fluffy, with yellowish conidial drops exuding from the ostioles after 20 days.
China. Shaanxi Province: Xian City, on branches of Quercus aliena, 10 July 2020, Q. Yang (holotype CSUFTCC104; ex-type living culture: CSUFTCC104; living cultures: CSUFTCC105 and CSUFTCC106).
Three strains representing Diaporthe quercicola cluster in a well-supported clade (ML/BI = 100/1), and appear closely related to D. biguttulata. Diaporthe quercicola can be distinguished based on ITS, his3, and tef-1α loci from D. biguttulata (8/461 in ITS, 18/448 in his3, and 22/325 in tef-1α). Morphologically, D. quercicola can be distinguished from D. biguttulata by its fusiform, eguttulate alpha conidia and narrower beta conidia (1 vs. 0.9–1.6 μm) (
Named after the host genus on which it was collected, Rhodomyrtus.
On PNA: Conidiomata pycnidial, 500–850 μm diam, globose or rostrate, black, erumpent in tissue, erumpent at maturity, often with translucent conidial drops exuding from ostioles. Conidiophores reduced to conidiogenous cells. Conidiogenous cells (14.5–)15.5–23(–25.5) × 1.5–2 μm (n = 30), L/W = 8.5–13, cylindrical, hyaline, unbranched, septate, straight, tapering towards the apex. Alpha conidia abundant in culture, hyaline, aseptate, ellipsoidal, biguttulate, 6–7(–8.5) × 2–2.5(–3) μm (n = 30), L/W = 2.8–3.3. Beta conidia hyaline, aseptate, filiform, straight to sinuous, eguttulate, (15–)16.5–21.5(–23) × 1–1.5 µm (n = 30), L/W = 15.5–16.5.
Colony entirely white at surface, reverse with pale brown pigmentation, white, fluffy aerial mycelium.
China. Jiangxi Province: Ganzhou City, on leaves of Rhodomyrtus tomentosa, 10 May 2018, Q. Yang & Y.M. Liang (holotype
This new species is introduced as molecular data, and shows it to be a distinct clade with high support (ML/BI = 100/1) and appears closely related to Diaporthe hongkongensis. Diaporthe rhodomyrti can be distinguished based on ITS, cal, his3, tef-1α, and tub2 loci from D. hongkongensis (2/463 in ITS, 26/441 in cal, 11/434 in his3, 10/327 in tef-1α, and 2/420 in tub2). Morphologically, D. rhodomyrti can be distinguished from D. hongkongensis by its longer conidiogenous cells (15.5–23 vs. 5–12 μm) and narrower beta conidia (1–1.5 vs. 1.5–2 μm) (
In this study, investigations of forest pathogens in Beijing, Jiangxi, Shaanxi and Zhejiang Provinces was carried out. Identification of our collections was conducted, based on isolates from fruiting bodies using five combined loci (ITS, cal, his3, tef-1α, and tub2), as well as morphological characteristics. It includes Diaporthe eres and D. multiguttulata, as well as four new species named D. celticola, D. meliae, D. quercicola, and D. rhodomyrti.
Diaporthe (Diaporthaceae, Sordariomycetes) are species-rich asexual taxa, which are common pathogens that cause a variety of diseases, including dieback, stem cankers, leaf spots, leaf and pod blights, fruit rots and seed decay (
Many confusions occur in species separation of Diaporthe eres complex with the lack of an ex-type culture or ex-epitype culture, although a broad species concept has historically been associated with D. eres (
Recently, several studies have been conducted associated with various hosts in China. For instance, the research conducted by
This study is financed by National Natural Science Foundation of China (Project No.: 31670647) and the Research Foundation of Education Bureau of Hunan Province (Project No.: 19B608).