Research Article |
Corresponding author: Bao-Kai Cui ( cuibaokai@bjfu.edu.cn ) Academic editor: María P. Martín
© 2022 Shun Liu, Yi-Fei Sun, Yan Wang, Tai-Min Xu, Chang-Ge Song, Yuan-Yuan Chen, Bao-Kai Cui.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Liu S, Sun Y-F, Wang Y, Xu T-M, Song C-G, Chen Y-Y, Cui B-K (2022) Taxonomy and molecular phylogeny of Trametopsis (Polyporales, Basidiomycota) with descriptions of two new species. MycoKeys 90: 31-51. https://doi.org/10.3897/mycokeys.90.84717
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Trametopsis is a worldwide genus belonging to Irpicaceae in the phlebioid clade, which can cause a white decay of wood. Previously, only three species were ascribed to the genus. In this study, we performed a morphological and phylogenetic study of Trametopsis. Molecular phylogenetic analyses of multiple loci included the internal transcribed spacer (ITS) regions, the large subunit nuclear ribosomal RNA gene (nLSU), the largest subunit of RNA polymerase II (RPB1), the second largest subunit of RNA polymerase II (RPB2) and the translation elongation factor 1-α gene (TEF1). Phylogenetic trees were inferred from the combined datasets of ITS+nLSU sequences and ITS+nLSU+RPB1+RPB2+TEF1 sequences by using maximum parsimony, maximum likelihood and Bayesian inference analyses. Combined with molecular data, morphological characters and ecological traits, two new species of Trametopsis are discovered. Trametopsis abieticola is characterised by its pileate, solitary or imbricate basidiomata, buff to buff-yellow pileal surface when fresh, becoming pinkish buff to clay-buff when dry, cream to buff pore surface when fresh, becoming pinkish buff to greyish brown upon drying, round to angular and large pores (0.5–1 per mm), cylindrical basidiospores (5.8–7.2 × 1.9–2.6 μm), distributed in the high altitude of mountains and grows on Abies sp. Trametopsis tasmanica is characterised by its resupinate basidiomata, cream to pinkish-buff pore surface when fresh, becoming honey-yellow to snuff brown upon drying, cylindrical basidiospores (5.2–6.3 × 1.8–2.2 μm), and by growing on Eucalyptus sp. Detailed descriptions and illustrations of the two novel species are provided.
Irpicaceae, macrofungi, multi-gene phylogeny, new species, white-rot fungi
Trametopsis Tomšovský was established by
During our investigations of wood-decay fungi, some specimens of the phlebioid clade were collected. These specimens possess glabrous or velutinate to strigose pileal surface, round to angular, irregular, daedaleoid to irpicoid pores, saprophytic on dead wood and causing white rot. Preliminary morphological observations showed that these specimens may belong to Trametopsis. To determine the phylogenetic positions of these specimens, we performed phylogenetic analyses of Irpicaceae with emphasis on Trametopsis based on the combined sequences datasets of ITS+nLSU and ITS+nLSU+RPB1+RPB2+TEF1. Combining morphological and molecular evidence, two new species, viz., T. abieticola and T. tasmanica are described and illustrated.
The examined specimens were deposited at the herbarium of the Institute of Microbiology, Beijing Forestry University (
The procedures for DNA extraction and polymerase chain reaction (PCR) used in this study were the same as described by
The PCR cycling schedules for different DNA sequences of ITS, nLSU, RPB1, RPB2 and TEF1 genes used in this study followed those used in
A list of species, specimens, and GenBank accession number of sequences used for phylogenetic analyses in this study.
Species | Sample no. | Locality | GenBank accessions | References | ||||
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ITS | nLSU | RPB1 | RPB2 | TEF1 | ||||
Byssomerulius corium | FCUG 2701 | Russia | MZ636931 | GQ470630 | MZ748415 | OK136068 | MZ913668 |
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B. corium | Wu 1207-55 | China | MZ636932 | MZ637096 | — | — | — |
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B. corium | FP-102382 | USA | KP135007 | KP135230 | KP134802 | KP134921 | — |
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Ceriporia bubalinomarginata | Dai 11327 | China | JX623953 | JX644045 | — | — | — |
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C. bubalinomarginata | Dai 12499 | China | JX623954 | JX644044 | — | — | — |
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C. viridans | Spirin 5909 | Finland | KX236481 | KX236481 | — | — | — |
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C. viridans | Miettinen 11701 | Netherlands | KX752600 | KX752600 | — | — | — |
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Crystallicutis cf. serpens | Wu 1608-130 | China | MZ636946 | MZ637108 | — | — | — |
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C. cf. serpens | Wu 1608-81 | China | MZ636947 | MZ637109 | MZ748435 | OK136094 | MZ913699 |
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C. serpens | HHB-15692 | USA | KP135031 | KP135200 | KP134785 | KP134914 | — |
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C. sp. | FP-101245 | USA | KP135029 | — | — | — | — |
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Cytidiella albida | GB-1833 | Spain | KY948748 | KY948889 | KY948960 | OK136069 | MZ913675 |
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C. albomarginata | Wei 18-474 | China | MZ636948 | MZ637110 | MZ748429 | OK136070 | MZ913678 |
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C. albomarginata | Wu 0108-86 | China | MZ636949 | MZ637111 | MZ748430 | OK136071 | MZ913677 |
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C. albomellea | FP-102339 | USA | MZ636950 | MZ637112 | MZ748431 | — | — |
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C. nitidula | T-407 | USA | KY948747 | MZ637113 | KY948961 | OK136072 | MZ913676 |
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Efibula gracilis | FD-455 | USA | KP135027 | MZ637116 | KP134804 | OK136077 | MZ913679 |
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E. gracilis | FP-102052 | USA | KP135028 | — | — | — | — |
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E. matsuensis | Wu 1011-18 | China | MZ636956 | MZ637119 | MZ748418 | OK136078 | MZ913680 |
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E. matsuensis | Wu 1011-19 | China | MZ636957 | MZ637120 | — | — | — |
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E. tropica | Chen 3596 | China | MZ636966 | MZ637128 | — | — | — |
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E. tropica | Wei 18-149 | China | MZ636967 | MZ637129 | MZ748419 | OK136079 | MZ913681 |
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E. yunnanensis | Wu 880515-1 | China | MZ636977 | GQ470672 | MZ748420 | OK136080 | MZ913682 |
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E. yunnanensis | Wu 0910-104 | China | MZ636976 | MZ637138 | — | — | — |
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Gloeoporus orientalis | Wei 16-485 | China | MZ636980 | MZ637141 | MZ748443 | OK136095 | MZ913709 |
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G. pannocinctus | L-15726 | USA | KP135060 | KP135214 | KP134867 | KP134973 | — |
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Irpex flavus | Wu 0705-1 | China | MZ636988 | MZ637149 | MZ748432 | OK136087 | MZ913683 |
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I. flavus | Wu 0705-2 | China | MZ636989 | MZ637150 | — | — | — |
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I. hacksungii | F 2008 | South Korea | FJ750851 | — | — | — | — |
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I. hydnoides | KUC 20121109-01 | South Korea | KJ668510 | KJ668362 | — | — | — |
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I. laceratus | WHC 1372 | China | MZ636990 | MZ637151 | — | — | — |
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I. lacteus | DO 421 | Sweden | JX109852 | JX109852 | — | JX109882 | — |
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I. lacteus | FD-93 | USA | KP135025 | — | — | — | — |
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I. latemarginatus | FP-55521-T | USA | KP135024 | KP135202 | KP134805 | KP134915 | — |
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I. latemarginatus | Dai 7165 | China | KY131834 | KY131893 | — | — | — |
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I. lenis | Wu 1608-14 | China | MZ636991 | MZ637152 | MZ748434 | — | MZ913685 |
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I. lenis | Wu 1608-22 | China | MZ636992 | MZ637153 | — | — | — |
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I. rosettiformis | LR40855 | USA | JN649347 | JN649347 | — | — | — |
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I. rosettiformis | Meijer3729 | Brazil | JN649346 | JN649346 | — | JX109875 | JX109904 |
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Leptoporus mollis | LE BIN 3849 | Russia | MG735341 | — | — | — | — |
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L. mollis | RLG-7163 | USA | KY948794 | MZ637155 | KY948956 | OK136101 | MZ913693 |
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Meruliopsis albostramineus | HHB 10729 | USA | KP135051 | KP135229 | KP134787 | — | — |
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M. crassitunicata | CHWC 1506-46 | China | LC427010 | LC427034 | — | — | — |
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M. leptocystidiata | Wu 1708-43 | China | LC427013 | LC427033 | LC427070 | — | — |
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M. parvispora | Wu 1209-58 | China | LC427017 | LC427039 | LC427065 | — | — |
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M. taxicola | GC 1704-60 | China | LC427028 | LC427050 | LC427063 | — | — |
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Phanerochaete albida | GC 1407-14 | China | MZ422788 | MZ637179 | MZ748384 | OK136013 | MZ913704 |
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P. alnea | FP-151125 | USA | KP135177 | MZ637181 | MZ748385 | OK136014 | MZ913641 |
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Phanerochaetella angustocystidiata | Wu 9606-39 | China | MZ637020 | GQ470638 | MZ748422 | OK136082 | MZ913687 |
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P. angustocystidiata | GC 1501-20 | China | MZ637017 | MZ637225 | — | — | — |
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P. exilis | HHB-6988 | USA | KP135001 | KP135236 | KP134799 | KP134918 | — |
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P. formosana | Chen 479 | China | MZ637023 | GQ470650 | MZ748424 | OK136084 | MZ913718 |
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P. formosana | Chen 3468 | China | MZ637022 | MZ637229 | — | — | — |
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P. leptoderma | Chen 1362 | China | MZ637025 | GQ470646 | MZ748423 | OK136083 | MZ913689 |
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P. leptoderma | Wu 1703-9 | China | MZ637027 | MZ637232 | — | — | — |
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P. xerophila | HHB-8509 | USA | KP134996 | KP135259 | KP134800 | KP134919 | MZ913688 |
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P. xerophila | KKN-172 | USA | KP134997 | — | — | — | — |
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Raduliporus aneirinus | HHB-15629 | USA | KP135023 | KP135207 | KP134795 | — | — |
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R. aneirinus | Wu 0409-199 | China | MZ637068 | MZ637267 | — | OK136096 | MZ913712 |
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R. pseudogilvescens | Wu 9508-54 | China | MZ637069 | MZ637269 | — | — | — |
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Resiniporus pseudogilvescens | Wu 1209-46 | China | KY688203 | MZ637268 | MZ748436 | OK136097 | MZ913713 |
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R. resinascens | BRNM 710169 | Czech Republic | FJ496675 | FJ496698 | — | — | — |
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Trametopsis abieticola | Cui 18363 | China | ON041038 | ON041054 | ON099403 | ON099411 | ON083777 | Present study |
T. abieticola | Cui 18383 | China | ON041039 | ON041055 | ON099404 | ON099412 | ON083778 | Present study |
T. aborigena | Robledo 1236 | Argentina | KY655336 | KY655338 | — | — | — |
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T. aborigena | Robledo 1238 | Argentina | KY655337 | KY655339 | — | — | — |
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T. brasiliensis | Meijer 3637 | Brazil | JN710510 | JN710510 | — | — | — |
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T. cervina | Cui 17712 | China | ON041040 | ON041056 | — | ON099413 | ON083779 | Present study |
T. cervina | Cui 18017 | China | ON041041 | ON041057 | — | ON099414 | ON083780 | Present study |
T. cervina | Cui 18019 | China | ON041042 | ON041058 | ON099405 | ON099415 | ON083781 | Present study |
T. cervina | Dai 21818 | China | ON041043 | ON041059 | ON099406 | — | ON083782 | Present study |
T. cervina | Dai 21820 | China | ON041044 | ON041060 | ON099407 | ON099416 | ON083783 | Present study |
T. cervina | Dai 22804 | China | ON041045 | ON041061 | — | ON099417 | ON083784 | Present study |
T. cervina | Dai 23454 | China | ON041046 | ON041062 | — | — | ON083785 | Present study |
T. cervina | He 6863 | China | ON041047 | ON041063 | ON099408 | ON099418 | ON083786 | Present study |
T. cervina | MG 299 | Iran | KU213592 | KU213594 | — | — | — | — |
T. cervina | TJV-93-216T | USA | JN165020 | JN164796 | JN164839 | JN164877 | JN164882 |
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T. tasmanica | Cui 16606 | Australia | ON041048 | ON041064 | ON099409 | ON099419 | ON083787 | Present study |
T. tasmanica | Cui 16607 | Australia | ON041049 | ON041065 | ON099410 | ON099420 | ON083788 | Present study |
Sequences were aligned with additional sequences downloaded from GenBank (Table
Phylogenetic analyses approaches used in this study followed
Trees were viewed in FigTree v1.4.4 (http://tree.bio.ed.ac.uk/software/figtree/). Branches that received bootstrap supports for maximum parsimony (MP), maximum likelihood (ML) and Bayesian posterior probabilities (BPP) greater than or equal to 75% (MP and ML) and 0.95 (BPP) were considered as significantly supported, respectively.
The combined 2-gene (ITS+nLSU) sequences dataset had an aligned length of 1893 characters, including gaps (619 characters for ITS, 1274 characters for nLSU), of which 1307 characters were constant, 105 were variable and parsimony-uninformative, and 481 were parsimony-informative. MP analysis yielded 26 equally parsimonious trees (TL = 2150, CI = 0.409, RI = 0.776, RC = 0.317, HI = 0.591). The best-fit evolutionary models applied in Bayesian analyses were selected by MrModeltest2 v. 2.3 for each region of the two genes, the model for ITS was GTR+I+G with equal frequency of nucleotides, while the model for nLSU was SYM+I+G with equal frequency of nucleotides. ML analysis resulted in a similar topology as MP and Bayesian analyses, and only the ML topology is shown in Fig.
Maximum likelihood tree illustrating the phylogeny of Trametopsis based on the combined sequences dataset of ITS+nLSU. Branches are labelled with maximum likelihood bootstrap higher than 50%, parsimony bootstrap proportions higher than 50% and Bayesian posterior probabilities more than 0.90 respectively. Bold names = New species.
The combined 5-gene (ITS+nLSU+RPB1+RPB2+TEF1) sequences dataset had an aligned length of 4609 characters, including gaps (619 characters for ITS, 1274 characters for nLSU, 1170 characters for RPB1, 1001 characters for RPB2, 545 characters for TEF1), of which 2675 characters were constant, 272 were variable and parsimony-uninformative, and 1662 were parsimony-informative. MP analysis yielded 36 equally parsimonious trees (TL = 9247, CI = 0.362, RI = 0.652, RC = 0.236, HI = 0.638). The best-fit evolutionary models applied in Bayesian analyses were selected by MrModeltest2 v. 2.3 for each region of the two genes, the model for ITS, RPB1, RPB2 and TEF1was GTR+I+G with equal frequency of nucleotides, while the model for nLSU was SYM+I+G with equal frequency of nucleotides. ML analysis resulted in a similar topology as MP and Bayesian analyses, and only the ML topology is shown in Fig.
Maximum likelihood tree illustrating the phylogeny of Trametopsis based on the combined sequences dataset of ITS+nLSU+RPB1+RPB2+TEF1. Branches are labelled with maximum likelihood bootstrap higher than 50%, parsimony bootstrap proportions higher than 50% and Bayesian posterior probabilities more than 0.90 respectively. Bold names = New species.
The phylogenetic trees inferred from ITS+nLSU and ITS+nLSU+RPB1+RPB2+TEF1 gene sequences were all obtained from 78 fungal samples representing 42 taxa of Irpicaceae and two taxa of Phanerochaetaceae within the phlebioid clade (Figs
Trametopsis abieticola is distinguished from T. tasmanica by larger pores (0.5–1 per mm) and basidiospores (5.8–7.2 × 1.9–2.6 μm), and by being distributed in the high altitude of mountains and growing on Abies sp.
China. Xizang Autonomous Region (Tibet), Mangkang County, Mangkang Mountain, on fallen trunk of Abies sp., 8 September 2020, Cui 18383 (holotype
Abieticola (Lat.): referring to the species grows on Abies sp.
Basidiomata annual, pileate, solitary or imbricate, soft corky to corky, without odour or taste when fresh, becoming corky and light in weight upon drying. Pilei applanate to flabelliform, projecting up to 9.5 cm long, 5.5 cm wide, and 2 cm thick at base. Pileal surface buff to buff-yellow when fresh, becoming pinkish buff to clay-buff when dry, strigose or glabrous; margin white to cream when fresh, becoming cream to buff-yellow when dry, obtuse to acute. Pore surface cream to buff when fresh, becoming pinkish buff to greyish brown upon drying; pores round to angular, 0.5–1 per mm; dissepiments slightly thick, entire to lacerate. Context corky, cream to buff yellow, up to 8 mm thick. Tubes concolorous with pore surface, corky, up to 7 mm long.
Hyphal system monomitic in context, dimitic in trama; generative hyphae with clamp connections; skeletal hyphae IKI–, CB–; tissues unchanged in KOH.
Generative hyphae hyaline, thin- to slightly thick-walled, occasionally branched, loosely interwoven, 2.8–4.2 μm in diam.
Generative hyphae frequent, hyaline, thin- to slightly thick-walled, occasionally branched, 1.8–3.5 μm in diam.; skeletal hyphae dominant, hyaline, thick-walled with a wide to narrow lumen, occasionally branched, more or less straight, interwoven, 2–4.5 μm in diam. Cystidia and cystidioles absent. Basidia clavate, bearing four sterigmata and a basal clamp connection, 17.8–22.5 × 4.3–5.5 µm; basidioles dominant, similar to basidia but smaller.
Basidiospores cylindrical, hyaline, thin-walled, smooth, IKI–, CB–, (5.7–)5.8–7.2 × (1.8–)1.9–2.6(–2.8) μm, L = 6.57 μm, W = 2.22 μm, Q = 2.75–3.26 (n = 60/2).
White rot.
China. Sichuan Province, Yajiang County, Kangbahanzi Village, on fallen trunk of Abies sp., 7 September 2020, Cui 18363 (
Trametopsis tasmanica is distinguished from T. abieticola by resupinate basidiomata, smaller pores (2–4 per mm) and basidiospores (5.2–6.3 × 1.8–2.2 μm), and by growing on Eucalyptus sp.
Australia. Tasmania, Hobart, Mount Wellington, on rotten wood of Eucalyptus sp., 13 May 2018, Cui 16606 (holotype
Tasmanica (Lat.): referring to the species collected from Tasmania in Australia.
Basidiomata annual, resupinate, not easily separated from the substrate, without odour or taste when fresh, becoming corky to fragile and light in weight upon drying; up to 5.5 cm long, 2 cm wide, and 7 mm thick at centre. Pore surface cream to pinkish-buff when fresh, becoming honey-yellow to snuff brown upon drying; pores round to angular, 2–4 per mm; dissepiments slightly thick, entire to lacerate. Context very thin, corky, cream to buff, up to 2 mm thick. Tubes concolorous with pore surface, corky, up to 4 mm long.
Hyphal system monomitic in context, dimitic in trama; generative hyphae with clamp connections; skeletal hyphae IKI–, CB–; tissues unchanged in KOH.
Generative hyphae hyaline, thin- to slightly thick-walled with a wide lumen, occasionally branched, loosely interwoven, 2.7–4 μm in diam.
Generative hyphae frequent, hyaline, thin-walled, occasionally branched, 2–3 μm in diam.; skeletal hyphae dominant, hyaline, thick-walled with a wide to narrow lumen, occasionally branched, more or less straight, interwoven, 2–3.7 μm in diam. Cystidia and cystidioles absent. Basidia clavate, bearing four sterigmata and a basal clamp connection, 16–19.5 × 3.7–5 µm; basidioles dominant, similar to basidia but smaller.
Basidiospores cylindrical, hyaline, thin-walled, smooth, IKI–, CB–, (5–)5.2–6.3 × (1.7–)1.8–2.2(–2.4) μm, L = 5.84 μm, W = 2.02 μm, Q = 2.66–3.13 (n = 60/2).
White rot.
Australia. Tasmania, Hobart, Mount Wellington, on rotten branch of Eucalyptus sp., 13 May 2018, Cui 16607 (
In this study, the phylogenetic analyses of Trametopsis and related genera are inferred from the combined datasets of ITS+nLSU sequences (Fig.
The main morphological characters and ecological habits of species in Trametopsis. New species are shown in bold.
Species name | Distribution | Climate zone | Host | Fruiting body | Pores (per mm) | Basidia (μm) | Basidiospores (μm) | References |
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Trametopsis abieticola | Asia (China) | Alpine plateau | Gymnosperm (Abies) | Pileate | 0.5–1 | 17.8–22.5 × 4.3–5.5 | 5.8–7.2 × 1.9–2.6 | Present study |
T. aborigena | South America (Argentina) | Neotropical | Angiosperm (Undetermined) | Pileate, effused-reflexed or occasionally resupinate | 1–3 | 19–22 × 5–6 | 5–7 × 1–2.5 |
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T. brasiliensis | South America (Brazil) | Neotropical | Angiosperm (Dicotyledonous) | Pileate | 1–2 | 15–20 × 4–5 | 4.5–5.5 × 1.8–2.2 |
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T. cervina | Africa (Burundi, Rwanda, Tanzania), Asia (China, Iran), Europe (Austria, Belgium, Czech, France, Greece, Italy, Slovakia, Poland, Ukraine, Russia, etc.), and North America (Canada, USA) | Alpine plateau, temperate to tropical | Angiosperm (Acer, Alnus, Betula, Carpinus, Elaeocarpus, Fagus, Juglans, Liquidambar, Populus, Quercus, Salix, etc.); Gymnosperm (Larix, Pinus) | Effused-reflexed to pileate or occasionally resupinate | 2–4 | 20–25 × 5–7 | 6–9 × 2–3 |
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T. tasmanica | Oceania (Australia) | Temperate marine climate | Angiosperm (Eucalyptus) | Resupinate | 2–4 | 16–19.5 × 3.7–5 | 5.2–6.3 × 1.8–2.2 | Present study |
Trametopsis abieticola is distributed in high altitude areas of the Hengduan Mountains (altitude > 3500 m) and grows on Abies sp. In the phylogenetic trees, T. abieticola is closely related to T. tasmanica (Figs
Trametopsis tasmanica is distributed in Tasmania, Australia and grows on Eucalyptus sp. Before that, there was no report of Trametopsis in Oceania. Morphologically, T. tasmanica and T. cervina share similar-sized pores, but T. cervina differs from T. tasmanica by its pileate to effused-reflexed basidiomata, larger basidiospores (6–9 × 2–3 μm;
In summary, we performed a taxonomic and phylogenetic study of Trametopsis. The concepts and species number of the Trametopsis are updated. So far, five species are accepted in the Trametopsis around the world. Currently, Trametopsis is characterised by an annual growth habit, effused-reflexed to pileate or resupinate, solitary or imbricate basidiomata, pinkish buff to cinnamon or clay-buff, zonate or azonate, glabrous or velutinate to strigose pileal surface, cream, pale yellow to greyish brown pore surface with round to angular, irregular, daedaleoid to irpicoid pores, a monomitic hyphal system in context, dimitic in trama, clamped generative hyphae, and allantoid to cylindrical basidiospores; it grows on different angiosperm and gymnosperm trees, causing white rot of wood (
We express our gratitude to Ms. Xing Ji (China) for help during field collections and molecular studies. Also to Drs. Genevieve Gates (Australia), Xiao-Lan He (China) and Hai-Xia Ma (China) for their assistance during field collections. The research is supported by the National Natural Science Foundation of China (Nos. 31870008, U2003211, 31900017), Beijing Forestry University Outstanding Young Talent Cultivation Project (No. 2019JQ03016).