Research Article |
Corresponding author: Zefen Yu ( zfyu2021@163.com ) Academic editor: Huzefa Raja
© 2020 Hua Zheng, Yake Wan, Jie Li, Rafael F. Castañeda-Ruiz, Zefen Yu.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Zheng H, Wan Y, Li J, Castañeda-Ruiz RF, Yu Z (2020) Phialolunulospora vermispora (Chaetosphaeriaceae, Sordariomycetes), a novel asexual genus and species from freshwater in southern China. MycoKeys 76: 17-30. https://doi.org/10.3897/mycokeys.76.57410
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The asexual taxon Phialolunulospora vermispora gen. et sp. nov., collected from submerged dicotyledonous leaves in Hainan, China, is described and illustrated herein. Phialolunulospora gen. nov. is characterized by macronematous, semimacronematous, septate and pigmented conidiophores and acrogenous, long lunate, vermiform to sigmoid, hyaline conidia with an eccentric basal appendage. Complete sequences of internal transcribed spacer (ITS) and partial sequences of nuclear large subunits ribosomal DNA (LSU) genes are provided. Phylogenetic analyses of combined ITS and LSU sequences revealed its placement in the Chaetosphaeriaceae. The new fungus is compared with morphologically similar genera.
Biodiversity, Chaetosphaeriales, phylogeny, taxonomy
China is considered an important Asian reservoir of biodiversity. The southern area of China ranks 34th in biodiversity hotspots (
During our present investigation of freshwater fungi in Hainan Island, South China, an interesting species was collected on dead leaves of an unidentified dicotyledonous tree. This species is characterized by unbranched and septate conidiophores, phialidic conidiogenous cells and vermiform to sigmoid and aseptate conidia with an eccentric basal appendage. Based on preliminary analysis of morphological data, we place this unknown fungus in Chaetosphaeriaceae, but a literature search found that it did not belong to any known genus. To further confirm the position of the species, phylogenetic analyses with related taxa within Chaetosphaeriaceae were carried out based on complete sequences of internal transcribed spacer (ITS) and partial sequences of nuclear large subunits ribosomal DNA (LSU) genes.
Submerged dicotyledonous leaves were collected from Limu Mountain Nature Reserve in Hainan Province. Samples were preserved in zip-lock plastic bags, labelled, and transported to the laboratory. The decomposed leaves were cut into several 2–4 × 2–4 cm sized fragments and then spread on to the surface of corn meal agar (CMA, 20 g cornmeal, 18 g agar, 40 mg streptomycin, 30 mg ampicillin, 1000 ml distilled water) medium for 10 days; single conidium was isolated with a sterilized needle and transferred to CMA plates while viewing with an Olympus BX51 microscope. The pure strain was further transferred to potato dextrose agar (PDA, 200 g potato, 20 g dextrose, 18 g agar, 40 mg streptomycin, 30 mg ampicillin, 1000 ml distilled water) medium. Colony morphology and microscopic characteristics were examined, and photographs were taken with an Olympus BX51 microscope connected to a DP controller digital camera. Measurement data were based on 30 random conidia and 10 conidiophores.
Pure cultures were deposited in the Herbarium of the Laboratory for Conservation and Utilization of Bio resources, Yunnan University, Kunming, Yunnan, China (YMF, formerly Key Laboratory of Industrial Microbiology and Fermentation Technology of Yunnan) and at the China General Microbiological Culture Collection Center (
Pure cultures were grown on PDA medium for 5 days at 25 °C. Actively growing mycelium was scraped off from the surface of the culture and transferred to 2 ml Eppendorf micro-centrifuge tubes. Total genomic DNA was extracted according to the procedures in
Species | Strain | ITS | LSU |
---|---|---|---|
Adautomilanezia caesalpiniae | LAMIC 010212 | NR_153560 | NG_058594 |
Anacacumisporium appendiculatum | HMAS 245593T | KT001555 | KT001553 |
Anacacumisporium appendiculatum | HMAS 245602 | KT001556 | KT001554 |
Bahusutrabeeja dwaya | CBS 261.77T | MH861059 | MH872829 |
Brunneodinemasporium brasiliense | CBS 112007T | JQ889272 | JQ889288 |
Brunneodinemasporium jonesii | GZCC 16–0050T | KY026058 | KY026055 |
Cacumisporium capitulatum | FMR 11339 | HF677176 | HF677190 |
Cacumisporium capitulatum | SMH 3766 | – | AY017374 |
Calvolachnella guaviyunis | CBS 134695 | NR_153892 | NG_058879 |
Chaetosphaeria ciliata | CBS 122131T | MH863180 | MH874726 |
Chaetosphaeria ciliata | ICMP 18253 | – | GU180637 |
Chloridium chloroconium | FMR 11940 | KY853435 | KY853495 |
Chloridium sp. | HGUP 1806 | MK372070 | MK372068 |
Codinaea lambertiae | CBS 143419T | NR_156389 | NG_059053 |
Codinaea pini | CBS 138866T | NR_137943 | NG_058902 |
Conicomyces pseudotransvaalensis | HHUF 29956T | NR_138015 | LC001708 |
Cryptophiale hamulata | MFLUCC 180098 | – | MG386756 |
Cryptophiale udagawae | MFLUCC 180422 | MH758198 | MH758211 |
Cryptophialoidea fasciculata | MFLUCC 172119 | MH758195 | MH758208 |
Dendrophoma cytisporoides | CBS 223.95T | JQ889273 | JQ889289 |
Dictyochaeta ellipsoidea | MFLUCC 181574T | MK828628 | MK835828 |
Dictyochaeta lignicola | DLUCC 0899T | MK828630 | MK835830 |
Dictyochaeta assamica | CBS 242.66 | MH858788 | MH870426 |
Dictyochaetopsis gonytrichoides | CBS 593.93 | AF178556 | AF178556 |
Dinemasporium morbidum | CBS 129.66T | JQ889280 | JQ889296 |
Dinemasporium polygonum | CBS 516.95T | NR_137786 | NG_059109 |
Echinosphaeria canescens | SMH 4791 | – | AY436403 |
Eucalyptostroma eucalypti | CBS 142074T | NR_154027 | NG_059257 |
Eucalyptostroma eucalyptorum | CPC 31800T | NR_159834 | MH327838 |
Exserticlava vasiformis | TAMA 450 | – | AB753846 |
Gelasinospora tetrasperma | CBS 178.33 | NR_077163 | DQ470980 |
Helminthosphaeria clavariarum | SMH 4609T | – | AY346283 |
Infundibulomyces cupulata | BCC 11929T | EF113976 | EF113979 |
Infundibulomyces oblongisporus | BCC 13400T | EF113977 | EF113980 |
Kionochaeta castaneae | GZCC 18–0025T | MN104610 | MN104621 |
Kionochaeta microspora | GZCC 18–0036T | MN104607 | MN104618 |
Lasiosphaeria ovina | SMH 4605 | AY587923 | AY436413 |
Lecythothecium duriligni | CBS 101317 | – | AF261071 |
Leptosporella arengae | MFLUCC 150330T | MG272255 | MG272246 |
Leptosporella gregaria | SMH 4290T | – | AY346290 |
Linocarpon arengae | MFLUCC 150331T | – | MG272247 |
Linocarpon cocois | MFLUCC 150812T | MG272257 | MG272248 |
Menispora glauca | FMR 12089 | HF678528 | HF678538 |
Menispora tortuosa | DAOM 231154 | KT225527 | AY544682 |
Menispora tortuosa | CBS 214.56 | AF178558 | AF178558 |
Menisporopsis breviseta | GZCC 18–0071T | MN104612 | MN104623 |
Menisporopsis dushanensis | GZCC 18–0084T | MN104615 | MN104626 |
Morrisiella indica | HKUCC 10827 | – | DQ408578 |
Multiguttulispora sympodialis | MFLUCC 180153T | MN104606 | MN104617 |
Nawawia filiformis | MFLUCC 160853 | – | MH758206 |
Nawawia filiformis | MFLUCC 172394 | MH758196 | MH758209 |
Neonawawia malaysiana | CBS 125544T | GU229886 | GU229887 |
Paliphora intermedia | CBS 896.97T | NR_160203 | NG_057766 |
Paliphora intermedia | CBS 199.95 | – | EF204500 |
Phaeostalagmus cyclosporus | CBS 663.70 | MH859892 | MH871680 |
Phaeostalagmus cyclosporus | CBS 312.75 | – | MH872661 |
Phialolunulospora vermispora | YMF 1.04260T | MK165444 | MK165442 |
Phialosporostilbe scutiformis | MFLUCC 170227T | MH758194 | MH758207 |
Phialosporostilbe scutiformis | MFLUCC 181288 | MH758199 | MH758212 |
Pseudodinemasporium fabiforme | MAFF 244361T | AB934068 | AB934044 |
Pseudolachnea fraxini | CBS 113701T | JQ889287 | JQ889301 |
Pseudolachnea hispidula | MAFF 244364 | AB934071 | AB934047 |
Pseudolachnella longiciliata | HHUF 29962 | AB934081 | AB934057 |
Pseudolachnella yakushimensis | HHUF 29683T | AB934087 | AB934063 |
Pseudolachnella pachyderma | HHUF 29955 | AB934085 | AB934061 |
Pyrigemmula aurantiaca | CBS 126743T | HM241692 | HM241692 |
Pyrigemmula aurantiaca | CBS 126744 | HM241693 | HM241693 |
Rattania setulifera | GUFCC 15501 | GU191794 | HM171322 |
Ruzenia spermoides | SMH 4606 | – | AY436422 |
Sordaria fimicola | CBS 508.50 | MH856730 | MH868251 |
Sporoschisma hemipsilum | SMH 2125 | – | AF466083 |
Sporoschisma hemipsilum | SMH 3251 | – | AF466084 |
Stanjehughesia vermiculata | HKUCC 10840 | – | DQ408570 |
Striatosphaeria codinaeaphora | MR 1230 | AF178546 | AF178546 |
Striatosphaeria codinaeaphora | SMH 1524 | – | AF466088 |
Synaptospora plumbea | SMH 3962 | – | KF765621 |
Tainosphaeria jonesii | GZCC 16–0053 | KY026059 | KY026056 |
Tainosphaeria jonesii | GZCC 16–0065 | KY026060 | KY026057 |
Tainosphaeria monophialidica | MFLUCC 180146T | – | MN104616 |
Thozetella pandanicola | MFLUCC 160253T | MH388366 | MH376740 |
Thozetella tocklaiensis | CBS 378.58T | MH857817 | MH869349 |
Verhulstia trisororum | CBS 143234T | MG022181 | MG022160 |
Zanclospora iberica | CBS 130426T | KY853480 | KY853544 |
Zanclospora iberica | FMR 12186 | KY853481 | KY853545 |
Preliminary BLAST searches with the ITS and LSU sequences of our strain against the GenBank nucleotide database determined the closely related species (
Maximum-likelihood (ML) analysis was computed with RAxML (
0.01. The initial 25% of the generations of MCMC sampling were discarded as burn-in. The refinement of the phylogenetic tree was used for estimating BI posterior probability (BIPP) values. The tree was viewed in FigTree version 1.4 (
The combined dataset comprised 71 taxa (including our strain) representing 52 genera, which include 60 species in the family Chaetosphaeriaceae, 4 species in Helminthosphaeriaceae, 2 species in Linocarpaceae and 2 species in Leptosporellaceae, with Gelasinospora tetrasperma CBS 178.33, Sordaria fimicola CBS 508.50 and Lasiosphaeria ovina SMH 4605 as the outgroup. The final alignment comprised a total of 1475 base pairs, containing the ITS and LSU sequences, and were analyzed by BI and ML method. The topology of the tree is shown in Fig.
Phylogenetic tree derived from Bayesian analysis based on ITS and LSU sequences, depicting the relationships of the new taxon Phialolunulospora vermispora with closely related taxa. The numbers above branches represent BIPP (left) and MLBPs (right). BIPP over 95% and MLBPs greater than 70% are shown on the respective branches, and the bar represents the substitutions per nucleotide position. Gelasinospora tetrasperma CBS 178.33, Sordaria fimicola CBS 508.50 and Lasiosphaeria ovina SMH 4605 were used as outgroup.
Phialolunulospora vermispora Z. F, Yu & R. F. Castañeda
Phialo-Prefix, Phia. lis N.L fem. S. Phialide referring to the phialidic conidiogenous cells, and lunulospora, (lu.nu.la.tus N.L. adj. mean crescent-shaped + spo.ra N.L. fem. S. spora, referred to the conidia), referring to the genus Lunulospora.
Asexual fungus. Conidiophores macronematous, semimacronematous, mononematous, septate, prostrate or erect, straight or flexuous, pigmented. Conidiogenous cells integrated, terminal, cylindrical to subulate, pale brown to brown, monophialidic or polyphialidic, enteroblastic. Conidial secession schizolytic. Conidia solitary, acrogenous, long lunate, vermiform to sigmoid, unicellular, hyaline, truncate at the conspicuous or inconspicuous basal frill, with a cellular, unbranched, eccentric basal appendage.
China, Hainan province, Limu Mountain, 19°29'40"N, 107°80'45"E, ca. 350 m alt., from leaves of an unidentified dicotyledonous plant submerged in a stream, Apr 2015, Zefen Yu, YMF 1.04260 – holotype;
ver.mi- (from vermiformis), NL fem. adj mean worm-shaped + spo.ra N.L. fem. S. spora, referred to worm-shaped conidia.
Mycelium partly superficial and partly immersed, composed of septate, branched, smooth, hyaline, 1–2 μm wide hyphae. Conidiophores solitary, macronematous, semimacronematous, erect or prostrate, straight or flexuous, unbranched, up to 4-septate, cylindrical, up to 150 μm long, 3–4 μm wide, pale brown to brown, smooth, sometimes reduced to conidiogenous cells. Conidiogenous cells integrated, terminal, cylindrical to subulate, sometimes lageniform, determinate, smooth, pale brown to brown, mostly darker than conidiophores, phialidic, after secession leaving an inconspicuous basal frill, 12–47 × 2.6–3 μm. Conidia solitary, acrogenous, long lunate, vermiform to sigmoid, unicellular, guttulate, hyaline, smooth-walled, 31–55 × 2.5–3.5 μm, acute at the apex and narrow truncate at the base bearing minute marginal frills and a cellular, single, unbranched, somewhat attenuated or acuminate, eccentric basal appendage, 1.5–4.6 μm long.
Colonies attain 2.4 cm diameter on PDA and 2.8 cm diameter on CMA after 10 days at 25 °C. On PDA, colonies flat to slightly raised, aerial mycelium abundant, margin entire to undulate, surface white initially, then become buff and grey with age, reverse same color. Colonies on CMA, center with aerial mycelium cottony, periphery with scarce aerial mycelium, olivaceous grey, dark green exudate and soluble pigment produced, reverse same color.
The family Chaetosphaeriaceae was firstly introduced by
The asexual morph of the Chaetosphaeriaceae is hyphomycetous taxa. It is characterized by septate, branched or unbranched conidiophores with the conidiogenous cell monophialidic or polyphialidic, holoblastic or enteroblastic, smoothwalled (
Phialolunulospora is morphologically similar to some other genera species of Chaetosphaeriaceae in hyaline conidia with basal eccentric cellular appendages, including Neopseudolachnella A. Hashim. & Kaz. Tanaka, Pseudolachnea Ranoj., Pseudolachnella Teng and Rattania Prabhug. & Bhat. Of these, species of Neopseudolachnella, Pseudolachnea and Pseudolachnella are different from Phialolunulospora in acervular, setose and stromatic conidiomata (
Many freshwater species occur in the family Chaetosphaeriaceae. So far, approximately 16 genera in this family have been reported from fresh water, such as Codinaea (
This work was financed by the National Natural Science Foundation Program of PR China (31770026, 31970013). We are grateful to two reviewers for critically reviewing the manuscript and for providing helpful suggestions to improve this paper.