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Research Article
Gnomoniopsis chinensis (Gnomoniaceae, Diaporthales), a new fungus causing canker of Chinese chestnut in Hebei Province, China
expand article infoNing Jiang, Ling-Yu Liang, Cheng-Ming Tian
‡ Beijing Forestry University, Beijing, China
Open Access

Abstract

Chinese chestnut (Castanea mollissima) is an important crop tree species in China. However, branch canker and fruit rot are two kinds of severe diseases, which weaken the host and decrease chestnut production. During our investigations into chestnut diseases in China, several fungi have been confirmed as casual agents in previous studies, namely Aurantiosacculus castaneae, Cryphonectria neoparasitica, Cry. parasitica, Endothia chinensis and Gnomoniopsis daii. In this study, a new canker pathogen is introduced based on morphology, phylogeny and pathogenicity. Typical Gnomoniopsis canker sign of wide, orange tendrils emerging from hosts’ glaucous lenticels were obvious on the diseased trees in the field. Symptomatic branches or bark on stems from different chestnut plantations were sampled and isolated, then strains were identified by comparisons of DNA sequence data for the nuclear ribosomal internal transcribed spacer (ITS), partial translation elongation factor-1α (tef1) and β-tubulin (tub2) gene regions as well as morphological features. As a result, these strains appeared different from any known Gnomoniopsis species. Hence, we propose a novel species named Gnomoniopsis chinensis. Pathogenicity was further tested using the ex-type strain (CFCC 52286) and another strain (CFCC 52288) on both detached branches and 3-year-old chestnut seedlings. The inoculation results showed that Gnomoniopsis chinensis is mildly pathogenic to Chinese chestnut. However, further studies are required to confirm its pathogenicity to the other cultivated Castanea species in America, Europe and Japan.

Keywords

Castanea mollissima, chestnut disease, taxonomy

Introduction

The Chinese chestnut (Castanea mollissima), as well as the American chestnut (C. dentata), the European chestnut (C. sativa) and the Japanese chestnut (C. crenata), are known as the four main cultivated sweet chestnut species in the world (Conedera et al. 2004; Yi 2017). In recent studies, several important fungal pathogens have been reported from chestnut trees, including Aurantiosacculus castaneae, Cryphonectria neoparasitica, Cry. parasitica, Endothia chinensis and Gnomoniopsis daii from C. mollissima (Jiang et al. 2018a, 2019b; Jiang and Tian 2019); Cry. parasitica, G. smithogilvyi (syn. G. castaneae), Phytophthora cinnamomi and Sirococcus castaneae from C. sativa (Anagnostakis 1987; Visentin et al. 2012; Shuttleworth et al. 2013; Meyer et al. 2017; Shuttleworth and Guest 2017; Rigling and Prospero 2018; Akilli Şimşek et al. 2019; Lione et al. 2019). In China, Castanea mollissima is widely cultivated for its gluten-free, low fat, and cholesterol-free chestnuts (Lu and Guo 2017), but suffering from several fungal diseases (Li et al. 2006; Zhang et al. 2009).

The fungal genus Gnomoniopsis (Gnomoniaceae, Diaporthales) includes species all occurring in plant tissues as pathogens, endophytes or saprobes (Danti et al. 2002; Rossman et al. 2007; Walker et al. 2010; Sogonov et al. 2008). Until now, Gnomoniopsis species have been found on hosts from three plant families, Fagaceae, Onagraceae and Rosaceae (Sogonov et al. 2008; Walker et al. 2010). Two species occur as pathogens on Castanea species (family Fagaceae), i.e. Gnomoniopsis smithogilvyi (syn. G. castaneae) and G. daii (Crous et al. 2012; Jiang and Tian 2019). Gnomoniopsis smithogilvyi and G. castaneae were proposed by two independent studies, from rotten fruits of Castanea sativa (Crous et al. 2012; Visentin et al. 2012). However, Shuttleworth et al. (2015) proved that Gnomoniopsis smithogilvyi and G. castaneae are conspecific based on a comparative morphological analysis and five-marker phylogenetic analysis. The fungal name Gnomoniopsis smithogilvyi was published earlier than G. castaneae, hence G. smithogilvyi has priority over G. castaneae.

Gnomoniopsis smithogilvyi is an important nut rot agent on chestnut nuts, an endophyte in asymptomatic flowers, leaves and stems, and a saprobe on dead burrs and branches (Crous et al. 2012; Visentin et al. 2012). Moreover, this species has been reported as a severe bark pathogen on Castanea in several countries (Dar and Rai 2013, 2015; Pasche et al. 2016; Lewis et al. 2017; Trapiello et al. 2018; Lione et al. 2019). In China, Gnomoniopsis from rotten Chinese chestnut has proved to be a different species, namely Gnomoniopsis daii (Jiang and Tian 2019). In this study, we focused on the symptom, taxonomy and pathogenicity aspects of Gnomoniopsis species from cankered tissues on Chinese chestnut trees.

Materials and methods

Sample collection and isolation

During 2016 to 2019, investigations were conducted in chestnut plantations of nine provinces/municipalities in China, including Beijing, Fujian, Hebei, Hubei, Hunan, Liaoning, Shandong, Shaanxi and Tianjin. Typical Gnomoniopsis canker symptoms were only observed in Hebei Province (Fig. 1). Symptomatic barks from stems and cankered branches were collected in brown paper bags and transported to the laboratory for fungal isolations and further study. Single conidial isolates were acquired from asexual fruiting structures by removing a mucoid conidial mass from pycnidial ostioles, and spreading the suspension on the surface of potato dextrose agar (PDA; 200 g potatoes, 20 g dextrose, 20 g agar per L). Agar plates were incubated at 25 °C to induce germination of conidia. After inoculation for up to 36 h, single germinating conidia were then transferred to clean plates under a dissecting stereomicroscope with a sterile needle. Specimens and cultures were deposited and maintained in the Museum of Beijing Forestry University (BJFC) and China Forestry Culture Collection Center (CFCC), Beijing, China, respectively.

Figure 1. 

Symptoms caused by Gnomoniopsis chinensis on Chinese chestnut (Castanea mollissima) a, b severe cankers on adult trees c a dead young tree d lesion with conidiomata on the bark near the root e lesion with conidiomata on the stem.

DNA extraction and phylogenetic analysis

Genomic DNA was extracted from mycelium grown on PDA using a CTAB (cetyltrimethylammonium bromide) method (Doyle and Doyle 1990). Three partial loci, including the 5.8S nuclear ribosomal DNA gene with the two flanking internally transcribed spacer (ITS) regions, the translation elongation factor 1a (tef1), and the β-tubulin gene 2 (tub2), were amplified using the following primer pairs: ITS1 and ITS4 for ITS (White et al. 1990), EF1-728F and EF1-1567R for tef1 (Carbone and Kohn 1999), and Bt2a and Bt2b for tub2 (Glass and Donaldson 1995). The PCR conditions were: initial denaturation step of 5 min at 94 °C, followed by 35 cycles of 30 s at 94 °C, 50 s at 48 °C (ITS) or 54 °C (tef1) or 52 °C (tub2), and 1 min at 72 °C, and a final elongation step of 7 min at 72 °C. The PCR amplification products were scored visually by electrophoresis in 2 % agarose gels. The DNA sequencing was performed using an ABI PRISM 3730XL DNA Analyzer with BigDye Terminater Kit v.3.1 (Invitrogen) at the Shanghai Invitrogen Biological Technology Company Limited (Beijing, China). To assess the phylogenetic position of our isolates within the genus Gnomoniopsis, phylogenetic analyses were performed based on combined ITS, tef1 and tub2 sequence data, with Sirococcus castaneae (CBS 142041) and Apiognomonia errabunda (CBS 342.86) selected as outgroup taxa. The GenBank accession numbers of sequences used in the analysis are given in Table 1, which were aligned and edited manually in MEGA6 (Tamura et al. 2013). Maximum likelihood (ML) analysis was used for phylogenetic inferences of the concatenated alignments. ML analysis was implemented on the CIPRES Science Gateway portal using RAxML-HPC BlackBox v. 8.2.10 (Stamatakis 2014).

Table 1.

Isolates and GenBank accession numbers used in this study.

Species Country Host Strain GenBank Accession Number
ITS tub2 tef1
Apiognomonia veneta France Platanus occidentalis CBS 342.86 DQ313531 EU219235 DQ318036
Gnomoniopsis alderdunensis USA Rubus pedatus CBS 125679 GU320826 GU320788 GU320813
Gnomoniopsis alderdunensis USA Rubus parviflorus CBS 125680 GU320825 GU320787 GU320801
Gnomoniopsis alderdunensis USA Rubus parviflorus CBS 125681 GU320827 GU320789 GU320802
Gnomoniopsis chamaemori Finland Rubus chamaemorus CBS 804.79 GU320817 GU320777 GU320809
Gnomoniopsis chinensis China Castanea mollissima CFCC 52286 MG866032 MH545366 MH545370
Gnomoniopsis chinensis China Castanea mollissima CFCC 52287 MG866033 MH545367 MH545371
Gnomoniopsis chinensis China Castanea mollissima CFCC 52288 MG866034 MH545368 MH545372
Gnomoniopsis chinensis China Castanea mollissima CFCC 52289 MG866035 MH545369 MH545373
Gnomoniopsis clavulata USA Quercus falcata CBS 121255 EU254818 EU219211 GU320807
Gnomoniopsis comari Finland Comarum palustre CBS 806.79 EU254821 EU219156 GU320810
Gnomoniopsis comari Finland Comarum palustre CBS 807.79 EU254822 GU320779 GU320814
Gnomoniopsis comari Switzerland Comarum palustre CBS 809.79 EU254823 GU320778 GU320794
Gnomoniopsis daii China Castanea mollissima CFCC 54043 MN598671 MN605517 MN605519
Gnomoniopsis daii China Castanea mollissima CMF002B MN598672 MN605518 MN605520
Gnomoniopsis fructicola USA Fragaria vesca CBS 121226 EU254824 EU219144 GU320792
Gnomoniopsis fructicola France Fragaria sp. CBS 208.34 EU254826 EU219149 GU320808
Gnomoniopsis fructicola USA Fragaria sp. CBS 125671 GU320816 GU320776 GU320793
Gnomoniopsis guttulata Bulgaria Agrimonia eupatoria MS 0312 EU254812 NA NA
Gnomoniopsis idaeicola USA Rubus sp. CBS 125672 GU320823 GU320781 GU320797
Gnomoniopsis idaeicola USA Rubus pedatus CBS 125673 GU320824 GU320782 GU320798
Gnomoniopsis idaeicola France Rubus sp. CBS 125674 GU320820 GU320780 GU320796
Gnomoniopsis idaeicola USA Rubus procerus CBS 125675 GU320822 GU320783 GU320799
Gnomoniopsis idaeicola USA Rubus procerus CBS 125676 GU320821 GU320784 GU320811
Gnomoniopsis macounii USA Spiraea sp. CBS 121468 EU254762 EU219126 GU320804
Gnomoniopsis occulta USA Potentilla sp. CBS 125677 GU320828 GU320785 GU320812
Gnomoniopsis occulta USA Potentilla sp. CBS 125678 GU320829 GU320786 GU320800
Gnomoniopsis paraclavulata USA Quercus alba CBS 123202 GU320830 GU320775 GU320815
Gnomoniopsis racemula USA Chamerion angustifolium CBS 121469 EU254841 EU219125 GU320803
Gnomoniopsis sanguisorbae Switzerland Sanguisorba minor CBS 858.79 GU320818 GU320790 GU320805
Gnomoniopsis smithogilvyi Australia Castanea sp. CBS 130190 JQ910642 JQ910639 KR072534
Gnomoniopsis smithogilvyi Australia Castanea sp. CBS 130189 JQ910644 JQ910641 KR072535
Gnomoniopsis smithogilvyi Australia Castanea sp. CBS 130188 JQ910643 JQ910640 KR072536
Gnomoniopsis smithogilvyi Italy Castanea sativa MUT 401 HM142946 KR072532 KR072537
Gnomoniopsis smithogilvyi New Zealand Castanea sativa MUT 411 HM142948 KR072533 KR072538
Gnomoniopsis tormentillae Switzerland Potentilla sp. CBS 904.79 EU254856 EU219165 GU320795
Sirococcus castaneae Switzerland Castanea sativa CBS 142041 KX929744 KX958443 KX929710

Morphological identification and characterization

Species identification was based on morphological features of the asexual fruiting bodies produced on infected plant tissues, supplemented by cultural characteristics. Hence, cross-sections were prepared by hand using a double-edge blade. Morphological characteristics of the fruiting bodies including: size of conidiomata and locules; size and shape of conidiophores and conidia were determined under a Nikon AZ100 dissecting stereomicroscope. More than 20 fruiting bodies were sectioned, and 50 conidia were selected randomly for measurement using a Leica compound microscope (LM, DM 2500). Cultural characteristics of isolates incubated on PDA in the dark at 25 °C were recorded, including the colony color and pycnidium structures (Rayner 1970).

Pathogenicity trials

Two isolates of Gnomoniopsis chinensis (ex-type strain: CFCC 52286; CFCC 52288) were used for inoculations, and agar plugs were used as the negative control. Isolates were grown on PDA for five days at 25 °C before the tests. Inoculations were performed on detached branches and 3-year-old seedlings of Castanea mollissima, respectively. The detached branches and young seedling were collected from Hebei Province where the disease is emerging. The healthy chestnut branches (2 cm in diameter) were sampled from an adult chestnut tree and cut into pieces of 20 cm length. A total of 30 fresh and healthy branches and 15 seedlings were used for the pathogenicity tests. Ten branches and five seedlings were inoculated with each isolate and the negative control. For incubations, incisions were made on the middle of the detached branches and 1 cm above the midpoint of the seedling stem to expose the cambium using a 5-mm-diameter cork borer. Discs of agar were cut from the actively growing margins of the cultures and these were placed into wounds of the same size on the chestnut barks. Inoculated wounds and ends of inoculated branches were sealed with parafilm to reduce desiccation and the chance of contamination. The tested seedlings and branch segments were maintained in the greenhouse randomly at 25 °C under natural light conditions. Detached branches were inoculated in November 2017, and the young seedlings were tested in July 2019. The results from detached branches were evaluated after one month, and seedlings after three months, by measuring the lengths of the lesions on the cambium. The re-isolations were made from the resultant lesions from all tested branches and seedlings by cutting small pieces of discolored xylem and placing them onto the PDA plates. Re-isolations were identified based on morphology on PDA and ITS sequences. Differences among isolates in lesion length were analyzed by one-way analysis of variance (ANOVA) followed by least significant difference (LSD) tests. Statistical analysis was carried out by R software (version 3.4.3.) and considered as significant at p < 0.05.

Results

Phylogenetic analyses

The final combined ITS-tef1-tub2 matrix of Gnomoniopsis included 35 ingroup and two outgroup taxa, comprising 1364 alignment characters. Of these, 783 characters were constant, 117 variable characters were parsimony-uninformative and 464 characters were parsimony informative. The phylogenetic tree obtained from ML analysis is shown in Figure 2, indicating that all isolates from the present study are phylogenetically different from other known species with 100% ML bootstrap support.

Figure 2. 

Consensus tree resulting from a RAxML analysis of combined ITS, tef1 and tub2 sequence alignment for species of Gnomoniopsis. The scale bar represents the expected number of changes per site.

Taxonomy

Gnomoniopsis chinensis C.M. Tian & N. Jiang, sp. nov.

MycoBank No: 823868
Figures 3, 4

Etymology

Named after the country where it was first collected.

Description

Pathogenic on stems and branches of Castanea mollissima. Conidiomata pseudostromatic, globose to pulvinate, occurring separately, yellow to orange, semi-immersed in bark, 400–1000 µm high, 500–1500 µm diam, unilocular, single ostiolate, forming long, wide orange tendrils, 1500–2000 µm × 400–500 µm. Conidiophores indistinct, often reduced to conidiogenous cells. Conidiogenous cells oval, hyaline, 1-celled, 6–12 µm. Conidia oval, oblate, fusiform, straight to curved, hyaline, 2–3 guttules, (6.0–)6.5–8.5(–9.0) × (2.2–)2.7–3(–3.5) µm (mean = 7.5 × 2.7 µm).

Culture characters

Colonies on PDA attaining 90 mm after 20 days at 25 °C, flat, velutinous to shortly woolly, dark brown in center, gradually lightening to pale grey at margin; margin diffuse; reverse of almost same colors as surface.

Specimens examined

China, Hebei Province, Chengde City, chestnut plantation, 40°24'32.16"N, 117°28'56.24"E, 262 m asl, on stems and branches of Castanea mollissima, Ning Jiang, 11 October 2017 (BJFC-S1380, holotype; ex-type culture, CFCC 52286). Hebei Province, Qinhuangdao City, chestnut plantation, 40°22'52.32"N, 119°11'52.18"E, 246 m asl, on branches and twigs of Castanea mollissima, Ning Jiang, 14 October 2017 (BJFC-S1382, paratype; living culture, CFCC 52288). Hebei Province, Tangshan City, chestnut plantation, 40°12'59.76"N, 117°59'7.24"E, 67 m asl, on stems and branches of Castanea mollissima, Ning Jiang, 18 October 2017 (BJFC-S1383; living culture, CFCC 52289).

Notes

Three Gnomoniopsis species have been discovered from the host genus Castanea. They share similar conidial dimension (6.0–9.0 × 2.2–3.5 µm in Gnomoniopsis chinensis vs. 5.0–8.0 × 2.0–3.5 µm in G. daii vs. 6.0–9.5 × 2.0–4.0 µm in G. smithogilvyi) (Crous et al. 2012; Jiang and Tian 2019). However, we can distinguish them easily by the phylogram of ITS, tef1 and tub2 (Fig. 2). In addition, Gnomoniopsis chinensis and G. daii inhabit the Chinese chestnut (Castanea mollissima), but G. smithogilvyi on the European chestnut (C. sativa) and C. crenata × C. sativa hybrids.

Figure 3. 

Conidiomata of Gnomoniopsis chinensis from Castanea mollissima (BJFC-S1380, holotype) a–c habit of conidiomata on the chestnut stem d transverse sections through conidiomata e longitudinal sections through conidiomata. Scale bars: 1 mm (b–e).

Figure 4. 

Morphology of Gnomoniopsis chinensis from PDA (CFCC 52286, ex-type culture) a colonies on PDA b conidiomata formed on PDA c, f conidia d, e conidiogenous cells. Scale bars: 1 mm (b); 10 μm (c–f).

Pathogenicity trials

One month after inoculation on detached branches, the two Gnomoniopsis chinensis isolates produced lesions in the cambium of detached chestnut branches. In contrast, there was no lesion development in any of the negative control inoculations (Fig. 5). The lesion size of the two Gnomoniopsis chinensis isolates (CFCC 52286 and CFCC 52288) showed no significantly difference, while both of them were significantly longer than the negative control (P < 0.05) . Gnomoniopsis chinensis was consistently re-isolated from lesions.

Three months after inoculation on young seedlings, two isolates Gnomoniopsis chinensis and the negative control, produced minor lesions (Fig. 6). Statistical analyses of data showed no significant difference among two isolates Gnomoniopsis chinensis and the negative control (P < 0.05). However, Gnomoniopsis chinensis was still re-isolated successfully from the minor lesions caused by CFCC 52286 and CFCC 52288 and not from the negative control inoculations.

Figure 5. 

Lesions resulting from inoculation of Gnomoniopsis chinensis onto detached Castanea mollissima branches, and wound response on the negative control a CFCC 52288 b CFCC 52286 c negative control.

Figure 6. 

Lesions resulting from inoculation of Gnomoniopsis chinensis onto 3-year-old Castanea mollissima seedlings, and wound response on the negative control a, d CFCC 52288 b, e CFCC 52286 c, f negative control. Row 1: lesions on the bark; row 2: lesions beneath the bark.

Discussion

In the past years, our team focused on the fungi inhabiting Chinese chestnut (Castanea mollissima) trees from their taxonomy and pathogenicity aspects. Several fungi including Aurantiosacculus castaneae, Cryphonectria neoparasitica, Cry. parasitica, Endothia chinensis and Gnomoniopsis daii have been proven to cause branch canker or fruit rot (Jiang et al. 2019b; Jiang and Tian 2019). Other fungi were reported to be associated with branch canker, however, they were not confirmed by incubation tests, including Aplosporella javeedii, Coryneum gigasporum, Co. sinense, Co. suttonii, Co. umbonatum, Cytospora ceratospermopsis, Cy. kuanchengensis, Cy. leucostoma, Cy. myrtagena, Cy. Schulzeri, Cy. xinglongensis, Dendrostoma aurorae, Den. castaneae, Den. castaneicola, Den. chinense, Den. parasiticum, Den. shaanxiense, Den. shandongense, Lopadostoma americanum, Melanops castaneicola, Myrmaecium fulvopruinatum, Neopseudomelanconis castaneae (Jiang et al. 2018b, c, d, 2019a, 2020). Subsequently, Dendrostoma atlanticum and Den. castaneum were reported from European chestnut (Castanea sativa) trees (Jaklitsch and Voglmayr 2019). Different Dendrostoma species were discovered from the Chinese and European chestnut stems, branches and twigs, which indicates similar plant and fungi interactions in different continents. Another example is that Gnomoniopsis daii causes Chinese chestnut rot and Gnomoniopsis smithogilvyi causes European chestnut rot (Crous et al. 2012; Jiang and Tian 2019). Interestingly, this study reveals a novel Gnomoniopsis species, G. chinensis, as an opportunistic pathogen causing bark cankers on Chinese chestnut, which is different from Gnomoniopsis smithogilvyi causing both nut rot and bark cankers (Crous et al. 2012; Visentin et al. 2012; Dar and Rai 2013, 2015; Pasche et al. 2016; Lewis et al. 2017; Trapiello et al. 2018).

Gnomoniopsis species appear host-specific, inhabiting hosts of three families, viz. Betulaceae, Fagaceae, Rosaceae and Onagraceae (Sogonov et al. 2008; Walker et al. 2010; Visentin et al. 2012; Linaldeddu et al. 2016). Five species have been discovered from fagaceous hosts, and they are similar in conidial size (Table 2). Gnomoniopsis clavulata and G. paraclavulata were recorded on Fagus or Quercus trees (Sogonov et al. 2008). Gnomoniopsis chinensis and G. daii were discovered only from Castanea trees. It is hard to distinguish them by the currently known conidial characteristics. However, all currently known Gnomoniopsis species can be successfully distinguished by phylogenetic analysis based on ITS, tef1 and tub2.

Table 2.

Conidial size of Gnomoniopsis species from fagaceous hosts.

Species Conidial length (µm) Conidial width (µm) Reference
Gnomoniopsis chinensis (6.0–)6.5–8.5(–9.0) (2.2–)2.7–3(–3.5) This study
Gnomoniopsis clavulata (5–)6–6.5(–8) (2–)2.5–3(–4) Sogonov et al. 2008
Gnomoniopsis daii (5.0–)5.5–7.0(–8.0) 2.0–3.5 Jiang and Tian 2019
Gnomoniopsis paraclavulata (6–)7.5–8(–9.5) (2–)3–3(–3.5) Sogonov et al. 2008
Gnomoniopsis smithogilvyi (6.0–)8(–9.5) (2.0–)2.5(–4.0) Crous et al. 2012

Stevanović et al. (2019) reported Gnomoniopsis idaeicola to cause blackberry canker and wilting in Serbia. With the same signs on the host bark, especially the wide, orange tendrils emerging from hosts’ glaucous lenticels, Gnomoniopsis chinensis appeared to be an emerging pathogen on Castanea mollissima. Chestnut blight, caused by Cryphonectria parasitica, a notorious bark disease on chestnut trees worldwide (Rigling and Prospero 2018), can be distinguished from chestnut Gnomoniopsis canker, and the presence of mycelial fans in the cambial region. Nowadays, we have characterized the two canker pathogens on Chinese and European chestnut trees, Gnomoniopsis chinensis and G. smithogilvyi. They appear not to be very pathogenic to their native hosts, but the pathogenicity to non-native hosts is still unknown. Gnomoniopsis and Cryphonectria belong to the same fungal order Diaporthales, and are similar in some aspects. Hence, more work on these two pathogens is necessary on both Castanea mollissima and C. sativa. In addition, considering the high value of the plant genus, Castanea, and the current situation of serious commercial loss caused by various fungi, more comprehensive and detailed investigations are necessary to understand the diversity of microbes on the hosts and their functions.

Acknowledgements

This study is financed by National Natural Science Foundation of China (Project No.: 31670647). We are grateful to Chungen Piao, Minwei Guo (China Forestry Culture Collection Center (CFCC), Chinese Academy of Forestry, Beijing.

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