Research Article |
Corresponding author: Qian Chen ( chenqian3150@163.com ) Academic editor: Bao-Kai Cui
© 2019 Qian Chen, Yu-Cheng Dai.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Chen Q, Dai Y-C (2019) Two new species of Fuscoporia (Hymenochaetales, Basidiomycota) from southern China based on morphological characters and molecular evidence. MycoKeys 61: 75-89. https://doi.org/10.3897/mycokeys.61.46799
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Fuscoporia (Hymenochaetaceae) is characterized by annual to perennial, resupinate to pileate basidiocarps, a dimitic hyphal system, presence of hymenial setae, and hyaline, thin-walled, smooth basidiospores. Phylogenetic analyses based on the nLSU and a combined ITS, nLSU and RPB2 datasets of 18 species of Fuscoporia revealed two new lineages that are equated to two new species; Fuscoporia ramulicola sp. nov. grouped together with F. ferrea, F. punctatiformis, F. subferrea and F. yunnanensis with a strong support; Fuscoporia acutimarginata sp. nov. formed a strongly supported lineage distinct from other species. The individual morphological characters of the new species and their related species are discussed. A key to Chinese species of Fuscoporia is provided.
Hymenochaetaceae, phylogeny, taxonomy, wood-rotting fungi
Fuscoporia
In our study, phylogenetic analyses were carried out based on the nLSU and combined ITS, nLSU and RPB2 datasets including 99 (60 newly generated) sequences representing 18 species of Fuscoporia. From the analyses, two new species of Fuscoporia were found and described. In addition, a key to Chinese species in the genus was provided.
The studied specimens are deposited in the herbarium of the Institute of Microbiology, Beijing Forestry University (
Extract total genomic DNA was extracted from dried specimens by CTAB rapid plant genome extraction kit (Aidlab Biotechnologies Co., Ltd., Beijing, China) according to the manufacturer’s instructions with some modifications (
Taxa and GenBank accession numbers for ITS, nLSU and RPB2 sequences used in the phylogenetic analyses (Fig.
Species | Sample no. | Locality | GenBank accession no. | ||
---|---|---|---|---|---|
ITS | nLSU | RPB2 | |||
Fuscoporia acutimarginata | Dai 15137 | China | MH050751 | MH050765 | MN159384 |
Dai 16892 | China | MH050752 | MH050766 | MH079393 | |
Dai 15115 | China | MN121764 | MN121823 | MN159385 | |
F. atlantica | SP 445618 | Brazil | KP058515 | KP058517 | – |
SP 465829 | Brazil | KP058514 | KP058516 | – | |
F. callimorpha | Dai 17388 | Brazil | MN121765 | MN121824 | – |
Dai 17389 | Brazil | MN121766 | MN121825 | – | |
F. contigua | Dai 16025 | USA | MG008401 | MG008454 | MH079406 |
JV 1204/22.6-J | USA | MG008403 | MG008456 | MH079407 | |
Dai 13567A | Romania | MG008402 | MG008455 | MN159386 | |
F. ferrea | MUCL 45984 | France | KX961112 | KY189112 | – |
Cui 11801 | China | KX961101 | KY189101 | MN159387 | |
JV 1105/3-J | USA | MH050760 | MH050770 | MH079392 | |
F. ferruginosa | JV 1309/4 | Slovakia | KX961102 | KY189102 | MH079405 |
JV 1507/11-CN | Europe | MG008400 | MG008453 | MH079404 | |
F. gilva | Cui 11209 | China | MN121767 | MN121826 | MN159388 |
Dai 15681 | China | MN121768 | MN121827 | MN159389 | |
F. insolita | SP 5251 | Russia | KJ677113 | – | – |
SP 5208 | Russia | MN121769 | MN121828 | – | |
F. punctatiformis | Doll#872 | USA | MH050753 | – | – |
Dai 17443 | Brazil | MH050755 | MH050764 | – | |
F. ramulicola | Dai 15723 | China | MH050749 | MH050762 | MH079398 |
Dai 16155 | China | MH050750 | MH050763 | MH079399 | |
F. rufitincta | JV 1008/25 | USA | KJ940029 | KX058575 | – |
JV 0904/142 | USA | KJ940030 | KX058574 | – | |
F. senex | KUC 20110922-13 | Korea | JX463658 | JX463652 | – |
MEL:2382630 | Australia | KP012992 | KP012992 | – | |
F. setifer | Dai 15710 | China | MH050758 | MH050767 | MN159390 |
Dai 15706 | China | MH050759 | MH050769 | MN159391 | |
F. subferrea | Dai 16326 | China | KX961097 | KY053472 | MH079400 |
Dai 16327 | China | KX961098 | KY053473 | MH079401 | |
F. torulosa | JV 1405/2 | Czech | KX961106 | KY189106 | MN159392 |
JV 1312/19-Kout | Spain | KX961107 | KY189107 | MN159393 | |
F. viticola | JV 0911/6 | Czech | KX961110 | KY189110 | – |
He 2081 | USA | MN121770 | MN121829 | – | |
F. wahlbergii | Dai 15636 | China | MG008397 | MG008450 | MH079402 |
Dai 15659 | China | MG008398 | MG008451 | MH079403 | |
F. yunnanensis | Cui 8182 | China | MH050756 | – | MN159394 |
Dai 15637 | China | MH050757 | MH050768 | MN159395 | |
Coniferiporia sulphurascens | Cui 10429 | China | KR350565 | KR350555 | – |
C. weirii | CFS 504 | Canada | AY829341 | AY829345 | – |
Sixty new sequences (nineteen ITS, seventeen nLSU and twenty-four RPB2) of Fuscoporia species were newly generated (Table
Phylogenetic positions of Fuscoporia and the new species within the Hymenochaetaceae inferred from the nLSU sequences. Topology is from MP tree and statistical values (MP/BI/ML) are indicated for each node that simultaneously received BS from ML and MP not below 75%, and BPP from BI not below 0.9. Names of new species are in bold.
Sequences were aligned with BioEdit (
The nLSU datasets included 23 representatives genera of Hymenochaetaceae and the combined ITS+nLSU+RPB2 datasets included 41 fungal specimens representing 20 species. In addition to sequences of new species, 14 new sequences of three species without published DNA sequences were uploaded – F. punctatiformis (Murrill) Zmitr., Malysheva & Spirin, F. setifer (T. Hatt.) Y.C. Dai and F. yunnanensis Y.C. Dai.
The nLSU dataset had an aligned length of 1386 characters, of which 996 were constant, 96 were variable but parsimony-uninformative, and 294 were parsimony-informative. Maximum Parsimony (MP) analysis yielded four equally most parsimonious trees (TL = 1639, CI = 0.350, RI = 0.733, RC = 0.256, HI = 0.650). Bayesian (BI) resulted in a similar consensus tree to that of the Maximum Parsimony (MP) and Maximum Likelihood (ML) analysis, with 1 million generations and an average standard deviation of split frequencies = 0.009570.
The three-gene dataset had an aligned length of 2950 characters, of which 1990 were constant, 90 were variable but parsimony-uninformative, and 870 were parsimony-informative. Maximum Parsimony (MP) analysis yielded 4 most parsimonious trees with near-identical topologies (TL = 2631, CI = 0.569, RI = 0.807, RC = 0.459, HI = 0.431). Bayesian (BI) resulted in a similar consensus tree to that of the Maximum Parsimony (MP) and Maximum Likelihood (ML) analysis, with 1 million generations and an average standard deviation of split frequencies = 0.005640.
Eighteen species of Fuscoporia formed a well-supported clade (94/1/96 in Fig.
China. Yunnan Province: Kunming, Wild Duck Park, 2 August 2016, on fallen angiosperm branch, Dai 16892 (holotypes:
“Acutimarginata” (Latin): referring to the species with a sharp margin of fruiting body.
Basidiocarps annual, effused-reflexed to pileate, broadly attached, without taste or odor and soft corky when fresh. Pilei conchate, laterally fused, convex towards margin, projecting up to 1.5 cm, 7 cm wide and 6 mm thick at base. Pileal surface yellowish brown to dark brown, velutinate, concentrically sulcate with zoned; margin acute, yellowish brown. Pore surface yellowish brown when dry, glancing; margin distinct, yellowish, up to 2 mm wide; pores circular to angular, 5–7 per mm; dissepiments thin, entire. Context yellowish brown to dull brown, corky, up to 3 mm thick. Tubes yellowish brown, paler than context, corky, up to 3 mm long.
Hyphal system dimitic; generative hyphae simple septate; tissue darkening but otherwise unchanged in KOH.
Generative hyphae rare, hyaline to pale yellowish, thin- to slightly thick-walled, occasionally branched, 2–3.5 μm in diam; skeletal hyphae dominant, yellowish brown, thick-walled with a wide lumen, unbranched, aseptate, interwoven, 2–4.3 μm in diam.
Generative hyphae hyaline, thin-walled, occasionally branched, 2–3 μm in diam, occasionally encrusted at dissepiment edges; skeletal hyphae dominant, yellowish brown, thick-walled with a wide lumen, unbranched, aseptate, straight, subparallel along the tubes, 2–4 μm in diam. Irregular crystals occasionally present among trama and hymenia.
Hymenial setae rare, mostly originating from tramal hyphae, subulate, dark brown, thick-walled, 20–40 × 3–7 μm; cystidioles frequent, fusoid, sometimes covered with crystals, hyaline, thin-walled, 16.5–26 × 4–6.5 μm; basidia broadly clavate, with four sterigmata and a simple septum at the base, 14–17 × 4.8–6.5 μm; basidioles similar in shape to basidia, but slightly smaller. Basidiospores cylindrical, hyaline, thin-walled, smooth, IKI–, CB–, (7–)7.5–9(–9.8) × (2.2–)2.5–3.2 μm, L = 8.12 μm, W = 2.87μm, Q = 2.73–2.95 (n = 60/2).
China. Hunan Province: Yizhang County, Mangshan Nature Reserve, Guizizhai, 16 Aug 2014, on fallen angiosperm trunk, Dai 15115 (
China. Yunnan Province: Binchuan County, Jizushan Park, 30 August 2015, on fallen angiosperm branch, Dai 15723 (holotypes:
“Ramulicola” (Latin) referring to the species growing on branches.
Basidiocarps annual, resupinate, effused, inseparable, without taste or odor and corky when fresh, light-weight and hard corky when dry, up to 10 cm long, 2.2 cm wide and 1 mm thick at center. Pore surface grayish brown, fawn, cracked with age; sterile margin yellowish brown to olivaceous buff, distinctly paler than tubes, up to 1 mm wide; pores more or less angular, 6–7 per mm; dissepiments thin, sometimes irregular to slightly lacerate; abundant setae seen in tube cavities (under lens). Subiculum reddish brown, corky, very thin, about 0.1 mm thick. Tubes olivaceous buff, paler contrasting with pores and subiculum, hard corky, up to 0.9 mm long.
Hyphal system dimitic; generative hyphae simple septate; tissue darkening but otherwise unchanged in KOH.
Generative hyphae rare, hyaline, thin-walled, occasionally branched and simple septate, 2.5–3 μm in diam; skeletal hyphae dominant, rust-brown, thick-walled with a wide lumen, unbranched, aseptate, flexuous, loosely interwoven, 3–3.8 μm in diam.
Generative hyphae rare, mostly present at dissepiment edges and subhymenium, hyaline, thin-walled, occasionally branched and frequently simple septate, 1.8–2.8 μm in diam, some of them at dissepiment edges and in the hymenium encrusted with small crystals; skeletal hyphae dominant, yellowish brown, thick-walled with a wide lumen, unbranched, aseptate, flexuous to more or less straight, subparallel along the tubes, 2.5–3.8 μm in diam. Irregular crystals usually present among trama and hymenia.
Hymenial setae frequent, mostly originating from hymenium, subulate, dark brown, thick-walled, 35–60 × 4.5–7 μm; cystidioles fusoid, sometimes covered with crystals, hyaline and thin-walled, 15–22 × 3–5 μm; basidia barrel-shaped, with four sterigmata and a simple septum at the base, 9–11 × 4.5–5.5 μm; basidioles frequently in hymenium, similar in shape to the basidia, but slightly smaller. Basidiospores cylindrical, hyaline, thin-walled, smooth, usually glued in tetrads, IKI–, CB–, with some small guttules, (5.2–)5.8–7(–7.2) × (1.8–)2–2.5(–2.8) μm, L = 6.37 μm, W = 2.28 μm, Q = 2.57–2.88 (n = 60/2).
China. Hainan Province: Wuzhishan County, Wuzhishan Nature Reserve, 14 Nov 2015, on fallen angiosperm branch, Dai 16155 (
In the study, sixteen previously accepted species of Fuscoporia were referred to morphological examination and phylogenetic analyses. Two species of Fuscoporia from China, F. acutimarginata and F. ramulicola, are described as new on the basis of molecular data and morphology. F. acutimarginata is characterized by annual, effused-reflexed to pileate basidiocarps, small pores (5–7 per mm), a dimitic hyphal structure, hymenial setae rarely present, originating from tramal hyphae, the presence of cystidioles, and cylindrical basidiospores measuring 7.5–9 × 2.5–3.2 μm. Phylogenetically, samples of F. acutimarginata formed a well-supported monophyletic lineage distinct from other Fuscoporia species (Fig.
Fuscoporia ramulicola is distributed in southern China and characterized by annual and resupinate basidiocarps, small pores (6–7 per mm), a dimitic hyphal system, subulate hymenial setae, the presence of cystidioles, and cylindrical basidiospores measuring 5.8–7 × 2–2.5 μm. F. ferrea, F. subferrea, F. yunnanensis and F. ramulicola have overlapping distribution in China and clustered together with F. punctatiformis in a clade with strong support (99/1/98 in Fig.
1 | Basidiocarps usually laterally stipitate; hymenial setae absent | F. discipes |
– | Basidiocarps sessile; hymenial setae present | 2 |
2 | Basidiocarps completely resupinate | 3 |
– | Basidiocarps effuse-reflexed to pileate | 11 |
3 | Mycelial setae present in the decayed wood and margin of basidiocarps (by hand lens) | 4 |
– | Mycelial setae absent from the decayed wood and margin of basidiocarps (by hand lens) | 5 |
4 | Pores 7–8 per mm | F. ferruginosa |
– | Pores 2–3 per mm | F. contigua |
5 | Basidiocarps perennial | 6 |
– | Basidiocarps annual | 9 |
6 | Pores 5–7 per mm | 7 |
– | Pores 7–10 per mm | 8 |
7 | Basidiospores cylindrical, 6–7.8 × 2–2.5 μm | F. ferrea |
– | Basidiospores subcylindrical, 4–6 × 1.5–2 μm | F. punctatiformis |
8 | Pores 9–10 per mm; basidiospores ellipsoid, < 5 μm long | F. chrysea |
– | Pores 7–8 per mm; basidiospores narrowly ovoid, > 5 μm long | F. montana |
9 | Pores 2–4 per mm | F. yunnanensis |
– | Pores 6–10 per mm | 10 |
10 | Pores 7–10 per mm; basidiospores 4.2–6.2 µm long | F. subferrea |
– | Pores 6–7 per mm; basidiospores 6–7 µm long | F. ramulicola |
11 | Hymenial setae usually hooked | F. wahlbergii |
– | Hymenial setae straight | 12 |
12 | Pores 3–4 per mm | F. setifera |
– | Pores 5–11 per mm | 13 |
13 | Basidiocarps annual, margin acute | 14 |
– | Basidiocarps perennial, margin obtuse | 15 |
14 | Skeletal hyphae septate, spores ellipsoid, 3.3–4.2 × 2.2–3 μm | F. gilva |
– | Skeletal hyphae aseptate, spores cylindrical, 7.5–9 × 2.5–3.2 μm | F. acutimarginata |
15 | Basidiocarps subungulate; contextual skeletal hyphae aseptate | F. torulosa |
– | Basidiocarps usually applanate; contextual skeletal hyphae septate | 16 |
16 | Basidiospores 3.3–4.1 × 2.1–2.4 μm, skeletal hyphae unchanged in KOH | F. rhabarbarina |
– | Basidiospores 4–4.8 × 3.6–3.9 μm, skeletal hyphae swelling in KOH | F. senex |
We are grateful to Dr. Shuang-Hui He (