Research Article |
Corresponding author: Yu-Cheng Dai ( yuchengdai@bjfu.edu.cn ) Academic editor: Alfredo Vizzini
© 2019 Meng Zhou, Li Wang, Tom W. May, Josef Vlasák, Jia-Jia Chen, Yu-Cheng Dai.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Zhou M, Wang L, May TW, Vlasák J, Chen J-J, Dai Y-C (2019) Phylogeny and diversity of Haploporus (Polyporaceae, Basidiomycota). MycoKeys 54: 77-98. https://doi.org/10.3897/mycokeys.54.34362
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Four species of Haploporus, H. angustisporus, H. crassus, H. gilbertsonii and H. microsporus are described as new and H. pirongia is proposed as a new combination, based on morphological characteristics and molecular phylogenetic analyses inferred from internal transcribed spacer (ITS) and large subunit nuclear ribosomal RNA gene (nLSU) sequences. Haploporus angustisporus, H. crassus and H. microsporus occur in China, H. gilbertsonii occurs in the USA, and the distribution of H. pirongia is extended from New Zealand to Australia. Haploporus angustisporus is characterized by the distinct narrow oblong basidiospores measuring 10.5–13.5 × 3.9–5 µm. Haploporus crassus is characterized by the presence of ventricose cystidioles occasionally with a simple septum, dissepimental hyphae usually with a simple septum, unique thick-walled basidia and distinctly wide oblong basidiospores measuring 13.5–16.5 × 7.5–9.5 µm. Haploporus gilbertsonii is characterized by its large pores (2–3 per mm), a dimitic hyphal structure with non-dextrinoid skeletal hyphae and wide oblong basidiospores measuring 12–15 × 6–8 µm. Haploporus microsporus is characterized by distinctly small pores (7–9 per mm), the presence of dendrohyphidia, and distinctly small ellipsoid basidiospores measuring 5.3–6.7 × 3–4.1 µm. Haploporus pirongia is proposed as a new combination. Haploporus amarus is shown to be a synonym of H. odorus and Pachykytospora wasseri is considered a synonym of H. subtrameteus.
Polyporales, taxonomy, wood-inhabiting fungi
Haploporus Bondartsev & Singer (Polyporales, Basidiomycota) is characterized by annual to perennial, resupinate to pileate basidiocarps, a di- to trimitic hyphal system with clamped connections on the generative hyphae, cyanophilous skeletal hyphae, cylindrical to subglobose, hyaline, thick-walled, cyanophilous and ornamented basidiospores, and formation of a white rot (
During a study on taxonomy of Polyporaceae, several specimens of Haploporus from USA, Australia and China were studied. After morphological examinations and phylogenetic analysis of ITS and nLSU sequences, four new species were confirmed to be members of the Haploporus lineage. In this paper, we describe and illustrate these new species. In addition, Poria pirongia G. Cunn. was originally described from New Zealand (
Sections were studied microscopically according to
A CTAB rapid plant genome extraction kit (Aidlab Biotechnologies, Beijing) was used to obtain PCR products from dried specimens, according to the manufacturer’s instructions with some modifications (
Phylogenetic analyses. New sequences, deposited in GenBank (http://www.ncbi.nlm.nih.gov/genbank/) (Table
Species | Sample no. | Location | GenBank accession no. | |
---|---|---|---|---|
ITS | nLSU | |||
Haploporus alabamae | JV_0610_K16-Kout | Belize | KY264039 | |
Dollinger 895 | USA | KY264038 | MK433606 | |
JV 1704/75 | Costa Rica | MK429754 | MK433607 | |
H. angustisporus | Cui 9046 | China | KU941862 | KU941887 |
Dai 10951 | China | KX900634 | KX900681 | |
H. crassus | Dai 13580 | China | FJ627252 | KU941886 |
H. cylindrosporus | Dai 15643 | China | KU941853 | KU941877 |
Dai 15664 | China | KU941854 | KU941878 | |
H. gilbertsonii | JV 1209/63-J | USA | MK429755 | MK433608 |
JV 1611/5-J | USA | MK429756 | MK433609 | |
H. latisporus | Dai 11873 | China | KU941847 | KU941871 |
Dai 10562 | China | KU941848 | KU941872 | |
H. microsporus | Dai 12147 | China | KU941861 | KU941885 |
H. nanosporus | LYAD 2044a | Gabon | KU941859 | KU941883 |
LYAD 2044b | Gabon | KU941860 | KU941884 | |
H. nepalensis | Dai 12937 | China | KU941855 | KU941879 |
Cui 10729 | China | KU941856 | KU941880 | |
H. odorus | Dai 11296 | China | KU941845 | KU941869 |
Yuan 2365 | China | KU941846 | KU941870 | |
H. cf. odorus | KUC20121123-29 | Republic of Korea | KJ668537 | KJ668390 |
H. papyraceus | Dai 10778 | China | KU941839 | KU941863 |
Cui 8706 | China | KU941840 | KU941864 | |
KUC20130719-04 | Republic of Korea | KJ668535 | KJ668388 | |
H. pirongia | Dai 18659 | Australia | MH631017 | MH631021 |
Dai 18660 | Australia | MH631018 | MH631022 | |
Dai 18661 | Australia | MH631019 | MH631023 | |
Dai 18662 | Australia | MH631020 | MH631024 | |
PDD 95714 | New Zealand | MK429757 | ||
H. septatus | Dai 13581 | China | KU941843 | KU941867 |
Cui 4100 | China | KU941844 | KU941868 | |
H. sp. | KUC20080606-35 | Republic of Korea | KJ668534 | KJ668387 |
H. subpapyraceus | Dai 9324 | China | KU941841 | KU941865 |
Cui 2651 | China | KU941842 | KU941866 | |
H. subtrameteus | Dai 4222 | China | KU941849 | KU941873 |
Cui 10656 | China | KU941850 | KU941874 | |
Dai11270 | China | KY264042 | ||
H. cf. subtrameteus | KUC20121102-36 | Republic of Korea | KJ668536 | KJ668389 |
H. thindii | Cui 9373 | China | KU941851 | KU941875 |
Cui 9682 | China | KU941852 | KU941876 | |
H. tuberculosus | 15559 | Sweden | KU941857 | KU941881 |
15560 | Austria | KU941858 | KU941882 | |
H. tuberculosus (as Pachykytospora) | KA11 (GB) | Sweden | JX124705 | |
JV 9610/20 | Slovakia | KY264040 | MK433610 | |
JV 0509/19 | Czech Republic | KY264041 | MK433611 | |
Pachykytospora wasseri | LE814872 (T) | Russia | KM411456 | KM411472 |
Perenniporia hainaniana | Cui 6364 | China | JQ861743 | JQ861759 |
P. medulla-panis | Cui 3274 | China | JN112792 | JN112793 |
Maximum parsimony (MP) and Bayesian inference (BI) were employed to perform phylogenetic analysis of the two aligned datasets. The two phylogenetic analysis algorithms generated nearly identical topologies for each dataset, and, thus only the topology from the MP analysis is presented along with statistical values from the MP and BI algorithms. Most parsimonious phylogenies were inferred from the ITS + nLSU, and their combinability was evaluated with the incongruence length difference (ILD) test (
Phylogenetic trees were visualized using Treeview (
The combined ITS and 28S dataset included sequences from 46 fungal collections representing 21 species. The dataset had an aligned length of 2054 characters, of which 1399 characters are constant, 98 are variable and parsimony-uninformative, and 557 are parsimony-informative. MP analysis yielded 4 equally parsimonious trees (TL = 1370, CI = 0. 639, RI = 0.870, RC = 0.556, HI = 0.361). The best model for the combined ITS and 28S sequences dataset estimated and applied in the BI was GTR+I+G. BI resulted in a similar topology with an average standard deviation of split frequencies = 0.004515 to MP analysis, and thus only the MP tree is provided. Both BT values (≥50%) and BPPs (≥0.90) are shown at the nodes (Fig.
In both 28S+ITS- and ITS-based phylogenies (Figs
Differs from other Haploporus species by the combination of its resupinate habit, a dimitic hyphal structure with dextrinoid skeletal hyphae, the absence of dendrohyphidia, and distinct narrow oblong basidiospores measuring 10–13.5 × 4–5 µm.
CHINA. Guangdong Prov., Lianzhou County, Nanling Nat. Res., on fallen angiosperm branch, 15 May 2009, Dai 10951 (Holotype in BJFC).
Angustisporus (Lat.): referring to the species having narrow basidiospores.
Basidiocarps annual, resupinate, adnate, soft corky when fresh, become corky upon drying, without odor or tasteless when fresh, up to 3 cm long, 2.5 cm wide, 2 mm thick at center. Pore surface cream to pale yellowish brown when fresh, brownish when bruised, olivaceous buff to pale brown upon drying; sterile margin indistinct, very narrow to almost lacking; pores angular, 3–5 per mm; dissepiments thick, entire. Subiculum cream, corky, thin, about 0.1 mm thick. Tubes light buff, corky, about 1.9 mm long.
Hyphal system dimitic: generative hyphae bearing clamp connections, hyaline, thin-walled; skeletal hyphae dominant, thick-walled, frequently branched, dextrinoid, CB+, tissues unchanging in KOH.
Generative hyphae infrequent, hyaline, thin-walled, rarely branched, 1.5–2.5 µm in diam; skeletal hyphae dominant, hyaline, thick-walled with a narrow lumen to subsolid, frequently branched, interwoven, 1–2.5 µm in diam.
Generative hyphae frequent, hyaline, thin-walled, occasionally branched, 1.5–2.5 µm in diam; skeletal hyphae distinctly thick-walled with a narrow to wide lumen, frequently branched, interwoven, 1.2–2.5 µm in diam. Cystidia absent; cystidioles present, fusiform, 23–35 × 4–7 µm. Basidioles dominant, pear-shaped to subglobose, basidia barrel-shaped with 4-sterigmata and a basal clamp connection, 21–26 × 8–11 µm; . Dendrohyphidia absent. Some irregular-shaped crystals present among tube tramal structures.
Basidiospores oblong, hyaline, thick-walled, with short tuberculate ornamentation, IKI–, CB+, 10–13.5(–14) × (3.5–)4–5 µm, L = 11.25 µm, W = 4.44 µm, Q = 2.38–2.70 (n = 60/2).
CHINA. Guangdong Prov., Fengkai County, Heishiding Nat. Res., on fallen angiosperm branch, 1 July 2010, Cui 9046 (in BJFC).
Differs from other Haploporus species by the combination of a resupinate habit, a dimitic hyphal structure with non-dextrinoid skeletal hyphae, the presence of ventricose cystidioles occasionally with a simple septum, dissepimental hyphae usually with a simple septum, unique thick-walled basidia and distinct wide oblong basidiospores measuring 13.5–16.5 × 7.5–9.5 µm.
CHINA. Yunnan Prov., Xinping County, Ailaoshan Nat. Res., on rotten angiosperm wood, 15 Oct. 2013, Dai 13580 (Holotype in BJFC).
Crassus (Lat.): referring to the species having wide basidiospores.
Basidiocarps annual, resupinate, adnate, soft corky when fresh, become corky and cracked upon drying, without odor or taste when fresh, up to 35 cm long, 3 cm wide and 1 mm thick at center. Pore surface white to cream when fresh, becoming buff-yellow upon drying; sterile margin indistinct, very narrow to almost lacking; pores round, 3–5 per mm; dissepiments thin, mostly entire, sometimes lacerate. Subiculum cream, corky, thin, about 0.1 mm thick. Tubes light buff, corky, about 0.9 mm long.
Hyphal system dimitic: generative hyphae bearing clamp connections, hyaline, thin-walled; skeletal hyphae dominant, thick-walled, frequently branched, IKI–, CB+, tissues unchanging in KOH.
Generative hyphae infrequent hyaline, thin-walled, rarely branched, 1.5–2.5 µm in diam; skeletal hyphae dominant, hyaline, thick-walled with a narrow lumen, frequently branched, interwoven, 1–2 µm in diam.
Generative hyphae frequent, hyaline, thin-walled, occasionally branched, 1.5–3 µm in diam; skeletal hyphae dominant, distinctly thick-walled with a narrow to wide lumen, frequently branched, interwoven, 1.5–2.5 µm in diam; dissepimental hyphae usually with a simple septum. Cystidia absent; cystidioles present, ventricose, usually with a small umbo having a simple septum, occasionally with a few small guttules, 21–31× 8–10 µm. Basidioles thick-walled, dominant, similar in shape to basidia, but smaller; basidia thick-walled, pear-shaped to barrel-shaped with 4-sterigmata and a basal clamp connection, occasionally with some small guttules, 22–31 × 8–13 µm; dendrohyphidia absent. Some irregular-shaped crystals present among tube tramal stru ctures.
Basidiospores oblong, hyaline, thick-walled, with tuberculate ornamentation, IKI–, CB+, 13.5–16.5(–17) × (7–)7.5–9.5 µm, L = 15.06 µm, W = 8.15 µm, Q = 1.85 (n = 30/1).
Differs from other Haploporus species by its relatively large pores, 2–3 per mm, a dimitic hyphal structure with non-dextrinoid skeletal hyphae, the absence of dendrohyphidia, and wide oblong basidiospores measuring 12–15 × 6–8 µm.
USA. Arizona, Santa Rita Mt., Madera Canyon, on dead tree of Quercus, 20 Nov. 2016, Vlasák Jr. 1611/5-J (Holotype in PRM, isotype in JV and BJFC).
Gilbertsonii (Lat.): in honor of Prof. R.L. Gilbertson, the American mycologist.
Basidiocarps annual, resupinate, difficult to separate from the substrate, corky when dry, up to 10 cm long, 8 cm wide and 0.8 mm thick at center. Pore surface pale buff to buff when dry; sterile margin indistinct, very narrow to almost lacking; pores round to angular, 2–3 per mm; dissepiments thick, entire. Subiculum cream, corky, thin, about 0.3 mm thick. Tubes light buff, corky, about 0.5 mm long.
Hyphal system dimitic: generative hyphae bearing clamp connections, hyaline, thin-walled; skeletal hyphae dominant, thick-walled, frequently branched, IKI–, CB–, tissues unchanging in KOH.
Generative hyphae infrequent, hyaline, thin-walled, occasionally branched, 2–3 µm in diam; skeletal hyphae dominant, hyaline, distinctly thick-walled, frequently branched, interwoven, 1.5–3 µm in diam.
Generative hyphae infrequent, hyaline, thin-walled, occasionally branched, 1–3 µm in diam; skeletal hyphae dominant, distinctly thick-walled, frequently branched, interwoven, 2–4 µm in diam. Cystidia absent; cystidioles present, fusiform, hyaline, thin-walled, 13–23 × 4.5–6 µm. Basidia pear-shaped to barrel-shaped with 4-sterigmata and a basal clamp connection, occasionally with a few large guttules, 21–25 × 10–14 µm; basidioles dominant, similar in shape to basidia, but slightly smaller. Dendrohyphidia absent. Some irregular-shaped crystals present among tube tramal structures.
Basidiospores oblong, hyaline, thick-walled, with tuberculate ornamentation, IKI–, CB+, 12–15(–16) × (5.5–)6–8 µm, L = 14.07 µm, W = 6.9 µm, Q = 1.83–2.15 (n = 60/2).
USA. Arizona, Chiricahua Mt., Turkey Canyon, on dead tree of Quercus, 5 Sep. 2012, Vlasák Jr. 1209/63-J (JV, dupl. in BJFC).
Differs from other Haploporus species by the combination of a resupinate habit, a dimitic hyphal structure with dextrinoid skeletal hyphae, distinct small pores, 7–9 per mm, the presence of dendrohyphidia, and distinct small ellipsoid basidiospores measuring 5.3–6.7 × 3–4.1 µm.
CHINA. Hainan Prov., Ledong County, Jianfengling Nat. Res., on dead angiosperm tree, 23 March 2011, Dai 12147 (Holotype in BJFC).
Microsporus (Lat.): referring to the small basidiospores of this species.
Basidiocarps annual, resupinate, adnate, soft corky when fresh, become corky upon drying, odor- or tasteless when fresh, up to 20 cm long, 4.5 cm wide and 2 mm thick at center. Pore surface pinkish buff to clay-buff when dry; sterile margin indistinct, very narrow to almost lacking; pores angular, 7–9 per mm; dissepiments thick, entire. Subiculum cream, corky, thin, about 0.2 mm thick. Tubes light buff, corky, about 1.8 mm long.
Hyphal system dimitic: generative hyphae bearing clamp connections, hyaline, thin-walled; skeletal hyphae dominant, thick-walled, frequently branched, dextrinoid, CB–, skeletal hyphae swollen in KOH.
Generative hyphae infrequent, hyaline, thin-walled, rarely branched, 1.5–2.5 µm in diam; skeletal hyphae dominant, hyaline, thick-walled with a narrow to wide lumen, frequently branched, interwoven, 1.5–3 µm in diam.
Generative hyphae infrequent, hyaline, thin-walled, rarely branched, 1.5–3 µm in diam; skeletal hyphae distinctly thick-walled with a narrow lumen to subsolid, frequently branched, interwoven, 1–2 µm in diam. Cystidioles present, fusiform, 10–20 × 3.5–6 µm. Basidia barrel-shaped with 4-sterigmata and a basal clamp connection, 11–16 × 5.5–6.5 µm; basidioles dominant, similar in shape to basidia, but slightly smaller. Dendrohyphidia abundant, frequently branched. Some irregular-shaped crystals present among tube tramal structures
Basidiospores ellipsoid, hyaline, thick-walled, with tuberculate ornamentation, dextrinoid, CB+, 5.3–6.7(–7) × (2.9–)3–4.1 µm, L = 5.98 µm, W = 3.90 µm, Q = 1.78 (n = 30/1).
Poria pirongia G. Cunn., Bull. N.Z. Dept. Sci. Industr. Res., Pl. Dis. Div. 72: 39 (1947) (Basionym)
the epithet pirongia, derived from the type locality, Mount Pirongia, is a noun in apposition, and therefore remains spelt the same when transferred from Poria to Haploporus, despite the latter genus being masculine in gender.
Basidiocarps annual, resupinate, difficult to separate from the substrate, soft corky when fresh, corky upon drying, odor- or tasteless when fresh, up to 8 cm long, 2 cm wide and 1.7 mm thick at center. Pore surface white to cream when fresh, pale brownish when bruised, pinkish buff to clay-buff upon drying; sterile margin very narrow to almost lacking; pores round to angular, 3–4 per mm; dissepiments thick, entire. Subiculum cream, corky, thin, about 0.3 mm thick. Tubes light buff, corky, about 1.4 mm long.
Hyphal system trimitic: generative hyphae bearing clamp connections, hyaline, thin-walled, frequently branched; skeletal hyphae dominant, thick-walled to subsolid, hyaline to slightly yellowish, frequently branched; binding hyphae abundant, slightly thick-walled, IKI–, CB+, tissues unchanging in KOH.
Generative hyphae frequent, hyaline, thin-walled, frequently branched, 2.3–3.5 µm in diam; skeletal hyphae dominant, hyaline, distinctly thick-walled with a narrow lumen to subsolid, occasionally branched, interwoven, 2.5–4 µm in diam; binding hyphae abundant, slightly thick-walled,1–2 µm in diam.
Generative hyphae frequent, hyaline, thin-walled, frequently branched, 1.7–3.5 µm in diam; skeletal hyphae distinctly thick-walled with a narrow to wide lumen, frequently branched, interwoven, 2.5–4 µm in diam; binding hyphae slightly thick-walled,1–2.5 µm in diam. Cystidia absent; cystidioles present, fusiform, occasionally with an apical simple septum, sometimes with a few small guttules, 21–28 × 5–7 µm. Basidioles dominant, similar in shape to basidia, but slightly smaller, occasionally with a few large guttules; basidia pear-shaped to barrel-shaped with 4-sterigmata and a basal clamp connection, 21–35 × 8–11 µm. Hyphae at dissepiment usually thick-walled with simple septum. Dendrohyphidia absent. Some irregular-shaped crystals present among tube tramal structures.
Basidiospores oblong-ellipsoid to cylindrical, hyaline, thick-walled, with tuberculate ornamentations, some with a guttule, IKI–, CB+, 11–14(–15) × (4.8–)5.2–7 µm, L = 12.35 µm, W = 6.11 µm, Q = 1.83–2.15 (n = 90/3).
AUSTRALIA. Victoria, Melbourne, Dandenong Ranges Botanical Garden, on dead branch of Rhododendron, 12 May 2018, Dai 18659, 18660 & 18661 (MEL, dupl. in BJFC); on dead branch of Eucalyptus, 12 May 2018, Dai 18662 (MEL, dupl. in BJFC). NEW ZEALAND. Omahu Bush, on Melicytus, 15 Feb 2010, Cooper (PDD 95714, dupl. in BJFC).
=Haploporus amarus X.L. Zeng & Y.P. Bai, Acta Mycol. Sin. 12(1): 13 (1993). Holotype: China, Jilin Province, Northeast Normal University, Changchun, NENU, Zeng 1931.
Haploporus amarus was described from NE China (
=Pachykytospora wasseri Zmitr., Malysheva & Spirin, Ukrainskiy Botanichnyi Zhurnal 64(1): 42 (2007) Holotypus: Russia, Samara Reg., Stavropol Dist., Zhiguli Nat. Res., Padus avium, 12.09.2006, V.F. Malysheva, E.F. Malysheva, I.V. Zmitrovich, isotypus, LE 214872.
In our phylogenies (Figs
In the ITS-based phylogeny (Fig.
Haploporus gilbertsonii is closely related to H. cylindrosporus, H. thindii, H. nepalensis and H. tuberculosus. However, Haploporus thindii differs from H. gilbertsonii by its distinctly slimmer basidia (20–37 × 6.5–9.1 µm vs. 21–25 × 10–14 µm) and the absence of cystidioles (
The Haploporus nanosporus and H. microsporus clades are sister clades and Haploporus nanosporus is closely related to H. alabamae and H. angustisporus. Haploporus and H. nanosporus both have small basidiospores and occurs in tropical ecosystems,and all other differing in having larger basidiospores. However, H. nanosporus differs from H. microsporus by the absence of dendrohyphidia at the dissepiments, a trimitic hyphal system and absence of cystidioles (
In the ITS-LSU based phylogeny (Fig.
Haploporus pirongia is related to H. odorus, but the latter has a perennial and pileate basidiocarp with strong anise odor, ovoid basidiospores and lacks cystidioles (
Gilbertson and Ryvarden (1987) reported Haploporus tuberculosus (as Pachykytospora tuberculosa) from the USA, but only in a small region of southern Arizona where it should be “quite common on oaks, especially in Chiricahua Mountains”. Locally, we have collected in this region only H. gilbertsonii and believe that, in most cases, this species was mistaken for H. tuberculosus in Arizona. The presence of H. tuberculosus in America is questionable.
The research is supported by the National Natural Science Foundation of China (Project No. U1802231). We thank the curator of PDD for making material available on loan, and Shaun Pennycook for advice on the spelling of epithets.