Research Article |
Corresponding author: Alica Košuthová ( alica.kosuthova@nrm.se ) Academic editor: Thorsten Lumbsch
© 2019 Alica Košuthová, Martin Westberg, Mónica A.G. Otálora, Mats Wedin.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Košuthová A, Westberg M, Otálora MAG, Wedin M (2019) Rostania revised: testing generic delimitations in Collemataceae (Peltigerales, Lecanoromycetes). MycoKeys 47: 17-33. https://doi.org/10.3897/mycokeys.47.32227
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Here, we test the current generic delimitation of Rostania (Collemataceae, Peltigerales, Ascomycota) utilizing molecular phylogeny and morphological investigations. Using DNA sequence data from the mitochondrial SSU rDNA and two nuclear protein-coding genes (MCM7 and β-tubulin) and utilizing parsimony, maximum likelihood and Bayesian phylogenetic methods, Rostania is shown to be non-monophyletic in the current sense. A new generic delimitation of Rostania is thus proposed, in which the genus is monophyletic, and three species (Rostania coccophylla, R. paramensis, R. quadrifida) are excluded and transferred to other genera. Rostania occultata is further non-monophyletic, and a more detailed investigation of species delimitations in Rostania s. str. is needed. The new combinations Leptogium paramense and Scytinium quadrifidum are proposed.
Classification, cyanolichens, nomenclature, systematics, taxonomy, thallus anatomy
Collemataceae is a large group of predominantly foliose lichenized fungi commonly known as the “jelly lichens” due to their gelatinous habit. This is caused by a polysaccharide matrix around the Nostoc cyanobacterial photobionts that swells and becomes extremely gelatinous when wet. Until very recently, the generic classification of the Collemataceae s. str. was very unnatural and based solely on one character, presence (Leptogium) or absence (Collema) of a cellular cortex (
Rostania, the focus of the present study, corresponds to the Occultatum-group of Collema (
We sampled 52 specimens of Collemataceae for the molecular study, including six of the eight currently accepted Rostania species and representatives of all genera within the family Collemataceae, including type species. Sequences originating from the study of
Sequences utilized in this study (newly produced sequences in bold, remaining sequences produced by
Taxon | Geographic origin, voucher | GenBank accession number | ||
---|---|---|---|---|
mtSSU | b-tub | MCM7 | ||
Blenothallia crispa1 | Hungary: Thor 7021a (UPS–L48439) | JX992918 | KC119040 | JX992976 |
Blenothallia crispa 3 | Spain: Westberg (S–F315217) | MK445278 | MK451934 | MK451920 |
Callome multipartita 1 | Norway: Haugan 7015 (O–L117369) | GQ259019 | – | – |
Callome multipartita 2 | Austria: Hafellner 74818 (GZU18–2009) | MK445271 | MK451935 | – |
Collema leptaleum | Argentina: Wedin 8822 (S–F335749) | JX992928 | KC119038 | JX992986 |
Collema nigrescens | Spain: Aragón 80/04 (MA–16262) | EU982563 | KC119016 | JX992989 |
Collema subconveniens | New Zealand: Wedin 9225 (S–F335747) | JX992937 | KC119019 | JX992996 |
Enchylium bachmanianum | Sweden: Nordin 1521 (UPS–L133627) | JX992914 | MK451936 | JX992974 |
Enchylium polycarpon 3 | Sweden: Odelvik 04700 (S–L316455) | JX992934 | MK451937 | JX992993 |
Enchylium tenax 1 | Spain: Etayo 20214 (MA–L13396) | EU982556 | KC128823 | JX992998 |
Enchylium tenax 2 | Spain: Sarrión 1509 (MA–L14789) | EU982579 | KC128824 | – |
Lathagrium auriforme | Spain: Otálora 20904 (MA–L16249) | JX992913 | KC119008 | JX992973 |
Lathagrium cf. fuscovirens | Sweden: Wedin 9701 (S–F332476) | MK445277 | MK451938 | MK451921 |
Lathagrium fuscovirens | Sweden: Tibell 23588 (UPSL–145162) | JX992923 | KC119013 | JX992983 |
Leptogium azureum | Chile: Cornejo 26507 (MA–16273) | JX992939 | KC119021 | JX993002 |
Leptogium byssinum | Norway: Westberg (S–F264803) | KT240180 | – | KT240183 |
Leptogium denticulatum | Argentina: Wedin 8690 (S–F332474) | JX992947 | KC119025 | JX993012 |
Leptogium terrenum | Portugal: van den Boom 41781 (hb. van den Boom) | KT240181 | – | KT240184 |
Paracollema italicum 1 | Croatia: Nordin 2708 (UPS–L076283) | JX992925 | KC119015 | JX992984 |
Paracollema italicum 3 | Croatia: Nordin 2763 (UPS–L076284) | JX992926 | – | JX992985 |
Pseudoleptogium diffractum 1 | Sweden: Nygren 007 (UPS–L129612) | GQ259029 | – | – |
Pseudoleptogium diffractum 3 | Sweden: Nordin 2529 (UPS–L153952) | JX992949 | – | JX993015 |
Rostania callibotrys 1 | Kenya: Moberg 4431a (UPS–L22044) | MK445270 | MK451939 | – |
Rostania callibotrys 2 | Costa Rica: Sipman 20495 (GZU–113_8P) | MK445269 | MK451940 | – |
Rostania ceranisca 1 | Norway, Troms: Nordin 5721 (UPS–L130978) | MK445280 | MK451941 | – |
Rostania ceranisca 2 | Sweden, Pite Lappmark: Westberg PL433 (UPS-L931677) | MK445267 | MK451942 | MK451922 |
Rostania ceranisca 3 | Austria, Salzburg: MW_HOCH020 (S–F262465) | MK445268 | MK451943 | MK451923 |
Rostania multipunctata 1 | Greece, Crete: Nordin 3160 (UPS–L027750) | JX992930 | MK451944 | JX992988 |
Rostania multipunctata 2 | Greece, Korfu: Poelt 8852 (GZU–2–93) | MK445273 | MK451945 | – |
Rostania occultata v. occultata 1 | Sweden, Pite Lappmark: Westberg PL467 (UPS-L931673) | MK445266 | MK451946 | MK451924 |
Rostania occultata v. occultata 2 | Sweden, Dalarna: Westberg (S–F304739) | MK445259 | – | MK451925 |
Rostania occultata v. occultata 3 | Sweden, Uppland: Westberg (UPS–L834451) | MK445257 | – | MK451926 |
Rostania occultata v. populina 1 | Sweden, Södermanland: Nordin 5407 (UPS–L120396) | JX992931 | – | JX992991 |
Rostania occultata v. populina 2 | Greece, Crete: Llop 56060303 (S–F233720) | JX992932 | MK451947 | JX992990 |
Rostania occultata v. populina 3 | Sweden, Gästrikland: Odelvik 01269 (S–L42490) | MK445260 | MK451948 | MK451927 |
Rostania occultata v. populina 4 | Sweden, Jämtland: Kosuthova 174 (S–F332481) | MK445265 | MK451949 | MK451928 |
Rostania paramensis | Ecuador, Carchi: Palice 2796 (PRA–00013999) (HOLOTYPE) | MK445279 | – | – |
Rostania quadrifida 1 | USA, Oregon: McCune 2744 (UPS–L513233) | MK445272 | MK451950 | – |
Rostania quadrifida 2 | USA, Oregon: McCune 28536 (UPS–L513222) (ISOTYPE) | MK445274 | MK451951 | – |
Scytinium biatorinum | Sweden: Jonsson 5500 (UPS–L186460) | JX992940 | KC119022 | JX993003 |
Scytinium imbricatum | Sweden: Hermansson 18777 (UPS–L706500) | MK445264 | MK451952 | MK451929 |
Scytinium intermedium | Sweden: Nordin 7385 (UPS–L587203) | MK445263 | MK451953 | MK451930 |
Scytinium magnussonii | Spain: Otálora 20104 (MA) | EU982565 | KC119004 | JX993022 |
Scytinium palmatum | Sweden: Nordin 5369 (UPS–L113313) | JX992959 | KC119027 | JX993025 |
Scytinium parvum | Sweden: Thor 4300 (UPS–L174011) | JX992933 | KC119018 | JX992992 |
Scytinium plicatile | Sweden: Nordin 5566 (UPS–L124847) | GQ259033 | KC119030 | JX993030 |
Scytinium pulvinatum | Russia: Pystina 17352 (UPS–L738570) | MK445262 | MK451954 | MK451931 |
Scytinium sp_Palice2273 | Ecuador: Palice 2273 (PRA–00013997) | MK445275 | MK451955 | – |
Scytinium sp_Palice2274a | Ecuador: Palice 2274a (PRA–00013998) | MK445276 | – | – |
Scytinium subtile | Sweden: Ågren 686 (UPS–L163890) | JX992869 | KC119034 | – |
Scytinium tenuissimum | Spain: Aragón 1682/97 (MA) | JX992971 | KC119036 | – |
Scytinium turgidum | Spain: Aragón 1671/98 (MA–12868) | EU982592 | KC119037 | JX993040 |
Outgroups: | ||||
Placynthium rosulans | Sweden: Westberg URL222 (UPS–L854413) | MK445258 | MK451956 | MK451932 |
Placynthium nigrum | Sweden: Kosuthova 35 (S–F332479) | MK445261 | – | MK451933 |
Pannaria rubiginosa | Portugal: Purvis et Smith 27/4/95 (BM) | AY340513 | – | JX993042 |
Staurolemma omphalarioides | Spain: Aragón 83/04 (MA), mtSSU only Spain: Hafellner & Hafellner 41399 (UPS), MCM7 only |
EU982560 | – | JX993043 |
Peltigera apthosa | Sweden: Wedin 6164 (UPS) | AY340515 | AY536792 | JX000176 |
We studied morphological and anatomical characters under the light microscope and dissecting microscope. We used hand-cut longitudinal sections of apothecia to observe internal and microscopic characteristics, in water. Microscopic examinations of the thalli were conducted on transversal cross-sections of lobes in water, or lactic blue.
Two apothecia or (in the case of sterile samples) a thallus fragment, were selected for extraction. We extracted total DNA using the Plant DNA Mini Kit (Qiagen, Hilden, Germany) following the manufacturers’ instructions. We amplified ca 0.6 kb of the small subunit of the mitochondrial rDNA (mtSSU), ca 0.6 kb of the two protein-coding genes DNA replication licensing factor mini-chromosome maintenance complex component 7 (MCM7) and the β-tubulin gene (b-tub) using the same primer combinations and PCR settings as in previous studies (
To identify and avoid contaminants among the new sequences, we used Megablast high similarity matches in Geneious version R8 (http://www.geneious.com;
The mitochondrial and the two protein-coding datasets were analysed separately before concatenation using parsimony jackknifing (JK) in WinClada (
We performed parsimony JK in WinClada (
Evolutionary models and partitions according to the Best scheme calculated in PartitionFinder. In RAxML only the GTR+G (GTRGAMMA) model was used for all partitions.
Subset name | Analyses type | Nr of sites | Codon position | Best model | Partition |
---|---|---|---|---|---|
mtSSU | MrBayes | 735 | – | HKY+I+G | 1 |
MCM7 | MrBayes | 194 | 1 | SYM+I+G | 2 |
MCM7 | MrBayes | 194 | 2 | SYM+I+G | 2 |
MCM7 | MrBayes | 194 | 3 | HKY+I+G | 3 |
b-tub | MrBayes | 210 | 1 | SYM+I+G | 2 |
b-tub | MrBayes | 210 | 2 | JC | 4 |
b-tub | MrBayes | 210 | 3 | HKY+I+G | 3 |
mtSSU | RAxML | 735 | – | – | 1 |
MCM7 | RAxML | 194 | 1 | – | 2 |
MCM7 | RAxML | 194 | 2 | – | 3 |
MCM7 | RAxML | 194 | 3 | – | 4 |
b-tub | RAxML | 210 | 1 | – | 2 |
b-tub | RAxML | 210 | 2 | – | 3 |
b-tub | RAxML | 210 | 3 | – | 4 |
We produced 61 new sequences (Table
The most likely tree from the combined RAxML analysis based on 1947 aligned characters of mtSSU rDNA, MCM7 and b-tub from 57 specimens. Support values (Likelihood BS/Bayesian PP/parsimony JK) given when BS ≥ 70%, PP ≥ 0.90 and parsimony JK ≥ 70%. Branches receiving BS ≥ 75 %, PP ≥ 0.95 and JK ≥ 75% are indicated with a black dot. The different colour indicate different genera: blue = Leptogium, pink = Rostania, orange = Scytinium.
The analyses resulted in a topology (Fig.
Thallus habitus: ARostania occultata var. populina (Odelvik 1269, S), thallus lobes (arrow) B Rostania multipunctata (Poelt 8852, GZU), accessory lobules (arrow) C Rostania ceranisca (MW_HOCH020, S), accessory finger-like lobules (arrow) D Rostania laevispora (isotype of Collema laevisporum Swinscow & Krog, Tanzania, 1986, Swinscow & Krog T 3/6, O-00298), apothecium in initial stage (arrow) E Rostania callibotrys (Moberg 4431a, UPS), apothecium in initial stage (arrow). tL = thallus lobes, al = accessory lobules, Ai = apothecium in initial stage covering the top of the accessory lobules. Scale bar: 1 cm.
Rostania ceranisca, the only terricolous Rostania, is sister to the group consisting of R. multipunctata and R. occultata s. lat. In addition to its terricolous ecology, it is easily recognized by the erect accessory finger-like lobules (Fig.
Ascospores: ARostania occultata var. populina (Llop 56060303, S), cubic spores B Rostania ceranisca (Westberg L271_PL433, UPS), oblong spores; ascus (red line) with only four mature spores visible but remnants of four aborted spores can be seen (arrows) C Rostania callibotrys (Sipman 2049, GZU), oblong spores. Scale bar: 10 µm.
Rostania callibotrys does not group with Rostania s. str. (Fig.
We did not manage to get molecular data from R. coccophylla (Fig.
Thallus habitus: A Rostania coccophylla (isotype of Collema coccophyllum Nyl., India, 1858, Perrotet s.n., H-NYL 42355, H–9201376) B Rostania paramensis (Palice 2796, PRA-00013999; holotype of Collema paramense PM Jørg. & Palice) C Scytinium sp. Palice 2274a D Rostania paramensis Palice 2274b. tL = thalline lobes, is = isidia. Scale bar: 1 cm.
Rostania quadrifida and R. paramensis are not closely related to Rostania s. str. Rostania quadrifida was described by
Ascospores: A Rostania quadrifida (McCune 2744, UPS), cubic spores with 2–5 cells B Rostania paramensis (Palice 2796, holotype of Collema paramense), ellipsoid spores with acute ends C Leptogium azureum (Tehler 3140, S), ellipsoid spores with acute ends D Scytinium sp. (Palice 2273), oblong spores, E Scytinium sp. (Palice 2274), oblong spores. Scale bar = 10 µm
The generic position of R. paramensis has been complicated to assess.
Thalli, transversal cross-sections: A Thallus with pseudocortex and densely interwoven hyphae (Rostania quadrifida, McCune 2744, UPS) B Thallus with pseudocortex and straight and unbranched hyphae which are perpendicular to the surface (Rostania paramensis, Palice 2796, holotype of Collema paramense) C Thallus with eucortex and straight and unbranched hyphae which are perpendicular to the surface (Leptogium azureum, Tehler 3140, S) D Thallus with eucortex and paraplectenchymateous throughout (Scytinium sp. Palice 2273) E Thallus paraplectenchymateous throughout (Rostania occultata var. populina, Llop 56060303, S) A–E in lactic blue C in water. euC = eucortex, PsC = pseudocortex, Hp = hyphae, pPlect = paraplechtenchyma. Scale bar = 10 µm
Here we have tested the current generic concept of Rostania and conclude that at least three of the species should be excluded and that the position of R. callibotrys and R. laevispora in Rostania is uncertain. Rostania is characterized by crustose to subfoliose thallus with initially immersed apothecia (Fig.
Rostania includes six taxa: R. callibotrys, R. ceranisca, R. laevispora, R. multipunctata, R. occultata var. occultata, and R. occultata var. populina. Rostania occultata s. lat. is non-monophyletic and this species complex will be investigated in the near future.
Collema paramense P.M. Jørg. & Palice, Biblioth. Lichenol. 108: 136 (2012)
Type. ECUADOR. Carchi: volcan Chiles, wet paramo, Palice 2796 (PRA-00013999!–holotype, BG, QCA–isotypes).
Collema quadrifidum D.F. Stone & McCune, N. Amer. Fung. 5(2): 2 (2010)
U. S. A. OREGON, Douglas County: Bushnell-Irwin Rocks ACEC, McCune 28536 (OSC–holotype, US, UPS–L513222!–isotypes).
This project was funded by the Swedish Taxonomy Initiative (Svenska artprojektet) administered by the Swedish Species Information center (ArtDatabanken), grant 2016-207 4.3. We would like to thank Ulrika Nordin and Fredrik Jonsson for their kind help during the fieldwork. We are grateful to the staff of the herbaria H, O, PRA and UPS for loans and the staff at S for administering our loans. Finally, we thank the staff at the Department of Bioinformatics and Genetics at the Swedish Museum of Natural History, in particular Bodil Cronholm and Wendy Solis for their skilful lab assistance; and Johan Nylander for his helpful discussions regarding selection of best-fit partitioning schemes for analyses.