Research Article |
Corresponding author: Zefen Yu ( zfyu2021@163.com ) Academic editor: Cecile Gueidan
© 2019 Min Qiao, Weiguang Tian, Rafael F. Castañeda-Ruiz, JianPing Xu, Zefen Yu.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Qiao M, Tian W, Castañeda-Ruiz RF, Xu J, Yu Z (2019) Two new species of Verruconis from Hainan, China. MycoKeys 48: 41-53. https://doi.org/10.3897/mycokeys.48.32147
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Two new species of the genus Verruconis, V. hainanensis and V. pseudotricladiata, were described using combined morphological and DNA sequence data. The DNA sequences of respective strains including nuclear ribosomal DNA genes (nuSSU, ITS, nuLSU) and fragments of three protein-coding genes (ACT1, BT2, TEF1) were sequenced and compared with those from closely-related species to genera Ochroconis and Verruconis (Family Sympoventuriaceae, Order Venturiales). Morphologically, both species showed typical ampulliform conidiophores and conidiogenous cells, features not seen in other species of Verruconis. The conidia of V. hainanensis are fusiform and those of V. pseudotricladiata are Y or T shaped, similar to old members of a closely-related genus Scolecobasidium. The addition of these two new species provides a new perspective on the heterogeneity of Scolecobasidium.
Aquatic hyphomycetes, dematiaceous fungi, phylogenetic placement, new taxon
The genus Verruconis Samerp. et al. was proposed for the neurotropic opportunist Ochroconis gallopava (W.B. Cooke) de Hoog (
Besides V. panacis, other three Verruconis species were transferred from other genera. The type species, V. gallopava (W.B. Cooke) Samerp. & de Hoogs [≡ Dactylaria gallopava (W.B. Cooke) G.C. Bhatt & W.B. Kendr., ≡ Ochroconis gallopava (W.B. Cooke) de Hoog] was transferred from Diplorhinotrichum Höhn.; V. verruculosa (R.Y. Roy et al.) Samerp. & de Hoog (≡ Scolecobasidium verruculosum R.Y. Roy et al.) was transferred from Scolecobasidium and V. calidifluminalis (Yarita et al.) Samerp. & de Hoog (≡ Ochroconis calidifluminalis Yarita et al.) was transferred from Ochroconis. These reclassifications suggested that genera Ochroconis, Verruconis and Scolecobasidium E.V. Abbott are closely related and that both morphological and molecular data are needed in order to derive robust classifications. Ochroconis, typified by O. constricta (E.V. Abbott) de Hoog & Arx, transferred from Scolecobasidium, was set up to comprise species with unbranched, subspherical to cylindrical or clavate conidia. Based on these criteria, many Scolecobasidium species were transferred to Ochroconis, while species in the genus Scolecobasidium were restricted to those with T- or Y-shaped or bi-lobed, two- to many-celled conidia and ampulliform conidiogenous cells, possessing one to three conidium-bearing denticles at the apex of the conidiogenous cells (
However, Gams thought that an ex-type culture was not so important to decide if a genus is retained, because there are other cultures of S. terreum available all over the world, which clearly define the identity of this characteristic fungus. He even thought that CBS 510.71, the ex-type of Humicola minima Fassat., a species with characteristic Y-shaped conidia, may replace S. terreum (
Hainan Province, China is a centre of biodiversity for aquatic hyphomycetes. Since 2015, we have reported several new aquatic hyphomycetes from this area (
Submerged dicotyledonous leaves were collected from a stream in Hainan. Samples were collected in zip-lock plastic bags and labelled and then transported to the laboratory. The rotten leaves were cut into several 2–4 × 2–4 cm sized fragments in the laboratory and then spread on to the surface of CMA (20 g cornmeal, 18 g agar, 40 mg streptomycin, 30 mg ampicillin, 1000 ml distilled water) medium for 10 days; a single conidium was isolated and cultivated on CMA in Petri plates using sterilised needles while viewing with a BX51 microscope. Morphological observations were then made from CMA after incubation at 28 °C for one week. Measurement data were based on 30 random conidia and 10 conidiophores. Pure cultures were deposited in the Herbarium of the Laboratory for Conservation and Utilization of Bio-Resources, Yunnan University, Kunming, Yunnan, P.R. China (
Total DNA was extracted from fresh mycelia as described by
Preliminary BLAST searches with nuSSU and nuLSU gene sequences of the new isolates indicated that they had a close phylogenetic relationship with sequences from the genus Verruconis, Ochroconis and Scolecobasidium. Based on this, we downloaded sequences at the six marker loci from strains belonging to genera Ochroconis and Verruconis, including 42 strains representing 21 species of Ochroconis and four species of Verruconis. The sequences of these representative strains were combined with those from our own cultures (see Table
Species, strains and their corresponding GenBank accession numbers of sequences used for phylogenetic analyses.
Taxon | strain | GenBank accession number | |||||
---|---|---|---|---|---|---|---|
ACT | BT2 | ITS | LSU | SSU | TEF1 | ||
Ochroconis anellii (Graniti) de Hoog & Arx | CBS 284.64* | KF155912 | KF156184 | FR832477 | KF156138 | KF156070 | KF155995 |
O. anomala A. Nováková & Mart.-Sánch. | CBS 131816* | KF155935 | KF156194 | HE575201 | KF156137 | KF156065 | KF155986 |
O. constricta (E.V. Abbott) de Hoog & Arx | CBS 211.53* | KF155941 | KF156187 | HQ667519 | KF156148 | KF156073 | KF156005 |
CBS 202.27 | KF155942 | KF156161 | AB161063 | KF156147 | KF156072 | KF156003 | |
CBS 269.61 | KF155939 | KF156163 | KF156024 | KF156149 | KF156074 | KF156004 | |
O. cordanae Samerp., Crous & de Hoog | CBS 475.80* | HQ916976 | KF156197 | KF156022 | KF156122 | KF156058 | KF155981 |
CBS 172.74 | KF155906 | KF156198 | KF156023 | KF156121 | KF156057 | JF440566 | |
CBS 780.83 | KF155905 | KF156199 | HQ667539 | KF156120 | KF156059 | KF155979 | |
O. crassihumicola (Matsush.) de Hoog & Arx | CBS 120700 | KJ867427 | KJ867433 | KJ867429 | KJ867430 | KJ867431 | KJ867428 |
O. gamsii de Hoog | CBS 239.78* | KF155936 | KF156190 | KF156019 | KF156150 | KF156088 | KF155982 |
CBS 101179 | KF155937 | KF156192 | KF156020 | KF156151 | KF156091 | – | |
O. globalis Samerp., A.P.M. Duarte, Attili-Angelis & de Hoog | CBS 119644* | KF956086 | KF961065 | KF961086 | KF961097 | KF961108 | KF961075 |
CBS 131956 | KF956094 | KF961067 | KF961088 | KF961100 | KF961117 | KF961081 | |
CBS 135766 | KF956087 | KF961072 | KF961094 | KF961106 | KF961116 | KF961082 | |
O. humicola (G.L. Barron & L.V. Busch) de Hoog & Arx | CBS 116655* | KF155904 | KF156195 | HQ667521 | KF156124 | KF156068 | KF155984 |
O. icarus Samerp., A. Giraldo, Guarro & de Hoog | CBS 116645 | LM644599 | LM644604 | HQ667525 | LM644565 | KF156083 | – |
O. lascauxensis A. Nováková & Mart.-Sánch. | CBS 131815* | KF155911 | KF156183 | FR832474 | KF156136 | KF156069 | KF155994 |
O. longiphorum (Matsush.) Samerp. & de Hoog | CBS 435.76* | KF155908 | KF156182 | KF156038 | KF156135 | KF156060 | KF155978 |
O. macrozamiae Crous & R.G. Shivas | CBS 102491 | KF155938 | KF156191 | KF156021 | KF156152 | KF156092 | KF155983 |
O. minima (Fassat.) Samerp. & de Hoog | CBS 423.64 | KF155943 | KF156173 | HQ667523 | KF156131 | KF156085 | KF156008 |
CBS 536.69 | KF155944 | KF156174 | HQ667524 | KF156132 | KF156084 | KF156009 | |
O. mirabilis Samerp. & de Hoog | CBS 413.51 | KF155957 | KF156164 | HQ667536 | KF156140 | KF156076 | KF156001 |
dH 14815 | KF155954 | KF156170 | KF156036 | KF156145 | KF156079 | KF155998 | |
O. musae (G.Y. Sun & Lu Hao) Samerp. & de Hoog | CBS 729.95* | KF155948 | KF156171 | KF156029 | KF156144 | KF156082 | KF155999 |
O. ramosa A. Giraldo, Gené, Deanna A. Sutton & Guarro | UTHSC 03-3677 | LM644601 | LM644606 | LM644522 | LM644566 | LM644549 | – |
UTHSC 04-2729 | LM644602 | LM644607 | LM644523 | LM644567 | LM644550 | – | |
UTHSC 12-1082 | LM644603 | LM644608 | LM644524 | – | LM644551 | – | |
O. sexualis Samerp., Van der Linde & de Hoog | dH 22953 | KF155903 | KF156188 | KF156017 | KF156119 | KF156090 | KF155977 |
PPRI 12991* | KF155902 | KF156189 | KF156018 | KF156118 | KF156089 | KF155976 | |
O. tshawytschae (Doty & D.W. Slater) Kiril. & Al-Achmed | CBS 130.65 | KF155916 | KF156178 | HQ667566 | KF156127 | KF156061 | KF155989 |
CBS 228.66 | KF155915 | KF156179 | KF156016 | KF156128 | KF156064 | KF155992 | |
CBS 100438* | KF155918 | KF156180 | HQ667562 | KF156126 | KF156062 | KF155990 | |
O. verrucosa (Zachariah, Sankaran & Leelav.) Samerp. & de Hoog | CBS 225.77 | KF155909 | KF156186 | – | KF156130 | KF156066 | KF155985 |
CBS 383.81* | KF155910 | KF156185 | KF156015 | KF156129 | KF156067 | – | |
Scolecobasidium excentricum R.F. Castañeda, W. Gams & Saikawa | CBS 469.95* | KF155934 | KF156196 | HQ667543 | KF156105 | KF156096 | KF155975 |
Verruconis calidifluminalis (Yarita, A. Sano, de Hoog & Nishim.) Samerp. & de Hoog | CBS 125818* | KF155901 | KF156202 | AB385698 | KF156108 | KF156046 | KF155959 |
V. gallopava (W.B. Cooke) Samerp. & de Hoog | CBS 437.64* | HQ916989 | KF156203 | HQ667553 | KF156112 | KF156053 | KF155968 |
CBS 118.91 | – | – | – | KF156110 | KF156047 | – | |
CBS 863.95 | – | – | – | KF156114 | KF156052 | – | |
Verruconis verruculosa (R.Y. Roy, R.S. Dwivedi & R.R. Mishra) Samerp. & de Hoog | CBS 119775* | KF155919 | KF156193 | KF156014 | KF156106 | KF156055 | KF155974 |
Verruconis hainanensis Z.F. Yu & M. Qiao | YMF1.04165* | MK248271 | – | MK244397 | MK248269 | MF536879 | MF536881 |
Verruconis panacis T. Zhang & Y. Zhang | SYPF8337* | – | MF536883 | MF536882 | MF536880 | MK248267 | MK248272 |
Verruconis pseudotricladiata Z.F. Yu & M. Qiao | YMF1.04915* | – | MK253013 | MK244396 | MK248270 | MK248268 | MK248273 |
Six alignment files were generated, one for each gene and converted to NEXUS files with ClustalX 1.83 (
The phylogenetic relationships amongst the known representative taxa are completely congruent with the previous studies (
Phylogenetic tree based on Bayesian analysis of the combined sequences of SSU, ITS, LSU BT2, TEF1 and ACT1. Scolecobasidium excentricum is used as the outgroup. Bayesian posterior probabilities, greater than 0.95, are given above the nodes. Maximum likelihood bootstrap values, greater than 75%, are given below the nodes. The scale bar shows the expected changes per site.
Latin, hainanensis, refers to the collection locality.
Colonies on CMA medium compact, restricted, brown to fuliginous, 13 mm at 20 °C after 20 days, 16 mm at 25 °C, 11 mm at 30 °C, no growth at 35 °C. Aerial hyphae subhyaline to brown, smooth- or somewhat rough-walled. Conidiophores semi-macronematous, mononematous, sometimes slightly moniliform, unbranched or branched at the apex with 2–4 divergent conidiogenous cells, brown basal cell, pale brown branches, smooth, up to 25 μm long. Conidiogenous cells mostly monoblastic, discrete, scattered, brown to fuliginous or pale brown, lageniform to ampulliform, pale brown, 3.4–6.0 × 2.2–3.6 μm, with a fimbriate denticle-like at the conidiogenous locus after rhexolytic conidial secession. Conidia solitary, acrogenous, fusiform, rostrate at the apical cell, 3-septate, dark at the septa, coarsely verrucose, more or less equilateral, slightly constricted at the median septum, bicoloured, with brown middle cells and subhyaline end cells, 23–30.2 × 3.6–5.7 μm, with an inconspicuous basal frill.
CHINA. From leaves of an unidentified dicotyledonous plant submerged in a stream, Qixianling, Hainan Province, 18°68'N, 109°69'E, 902 m alt., 16 June 2016, Z.F. Yu (dried slide YMFT 1.04165, holotype; live culture
Verruconis hainanensis shares the fusiform conidial shape with some described Scolecobasidium species, such as: S. cateniphorum Matsush., S. caffrum Matsush., S. houhense D.W. Li & Jing Y. Chen and S. tropicum Matsush., but all these taxa are readily distinguishable from the new Chinese species. Specifically, S. cateniphorum is distinguished by its 1-septate, smooth or inconspicuous echinulate, 10–24 × 2–3.5 μm conidia (
Latin, pseudotricladiata refers to similar conidia shape to Scolecobasidium tricladiatum.
Colonies on CMA medium compact, restricted, brown to fuliginous, surface velvety or floccose, 12 mm at 20 °C after 20 days, 14 mm at 25 °C, 10 mm at 30 °C, no growth at 35 °C. Mycelium subhyaline to pale brown and smooth- or somewhat rough-walled. Conidiophores semi-macronematous, mononematous, straight or flexuous, 1–4 septa, sometimes moniliform (composed of 2–5 globose serial cells), pale brown, smooth, 6.5–27.2 × 2.1–3.5 μm, sometimes reduced to conidiogenous cells that arise from assimilative hyphae. Conidiogenous cells monoblastic, rarely polyblastic after sympodial elongation, globose, ampulliform, lageniform to clavate, 3.0–5.3 × 2.3–3.8 μm, integrated or discrete, mostly determinate, with an inconspicuous or distinct fimbriate denticle-like at the conidiogenous locus after rhexolytic conidial secession. Conidia mostly acrogenous, subhyaline to pale brown, smooth to verruculose, staurosporic, unbranched or branched: i) unbranched conidia (main axis) cylindrical-clavate, 2–4 septate, slightly constricted at the septa, mostly smooth, rarely verruculose, 16–20 × 3.3–4.7 μm, with an inconspicuous basal frill and often with a globose or ellipsoidal, 0–1 septate, 5.6–12.3 × 2.8–4.5 μm primary branch at the apex; ii) branched conidia staurosporic, Y-, or T-shaped, composed of the main axis and two branches (primary and secondary); iia) main axis cylindrical-clavate to clavate, 1–3-septate, mostly 2-septate, smooth or rarely verruculose, very pale brown, 15.6–20.6 × 3.8–5.7 μm; iib) primary branches obclavate, 1–2 septate, verruculose toward the apex, smooth at the basal cell, 17.9–18.2 × 2.9–4.7 μm, at an angle of 45° arising from the apex of main axis; iic) secondary branches ovoid to obclavate, smooth or verruculose towards the apex, 0–2-septate, (–5.6)12.3–17.9 × 2.8–4.5 μm, arising eccentrically from the basal cell of the primary branches.
Cultures and anamorph of Verruconis pseudotricladiata (
CHINA. From leaves of an unidentified broad-leaf species submerged in a stream, Diaoluo Mountain, Hainan Province, 18°41'N, 109°41'E, 254 m alt., 16 June 2016, Z.F. Yu (dried slide YMFT 1.04915, holotype; live culture
Verruconis pseudotricladiata is similar to S. tricladiatum Matsush. on the general conidial morphology, but in S. tricladiatum, the conidiophores are mostly moniliform, irregularly branched forming profuse fascicules and, on pure culture, lack staurosporic conidia or rarely formed on the conidiogenous cells, the conidia are mostly unbranched, ellipsoidal to fusiform, (1–) 3–4 (–5)-septate, (9.5–)14–22 (–28) × 4–5 (–6) μm, pale olivaceous or pale brown, verruculose conidia (
The Index Fungorum currently lists 66 names in Scolecobasidium. However, 22 of these 66 names have been transferred into genera Dactylaria Sacc., Paradendryphiella Woudenb. & Crous, Ochroconis, Trichoconis Clem., Neta Shearer & J.L. Crane and Verruconis (
Morphologically, the two new species resemble some members of the genus Scolecobasidium. Conidiophores composed of 2–5 globose serial cells are very typical in old members of Scolecobasidium, such as S. alabamense Matsush., S. amazonense Matsush., S. cateniphorum Matsush. and S. lanceolatum Matsush. However, amongst these species, only the LSU sequence of S. cateniphorum was available. Further, Y- branched conidia of V. pseudotricladiata was previously only described in S. tricladiatum, while T-shaped branched conidia appeared in four species, including the type species S. terreum, O. minima (Fassat.) Samerp. & de Hoog, O. ramosa Samerp. et al. and O. icarus Samerp. et al. In the molecular phylogenetic tree, inferred from the combined sequences of six marker loci, except for the type species, three species with T-shaped branched conidia form a single clade with high support within Ochroconis. In the combined analysis of SSU and LSU, S. tricladiatum strain P051 is closely related to V. pseudotricladiata and S. terreum 043 fell into Ochroconis, nested with other species with T-shaped branched conidia (data not shown). The phylogenetic analysis is partly consistent with the morphological comparison. The article, comprising sequences of S. tricladiatum strain P051 and S. terreum 043, has not been published and we do not know if two species have been identified correctly. Anyhow, molecular data for our strains will help improve the taxonomy and revision of Scolecobasidium.
When the genus Verruconis was established, the thermophilic character was one of the main characteristics distinguishing this genus from Ochroconis. The first three species included in this genus all have a high optimal growing temperature of 35–42 °C and maximum growing temperature of 47–50 °C (
This work was financed by the National Natural Science Foundation of PR China (31770026, 31760012). We are grateful to two reviewers for critically reviewing the manuscript and for providing helpful suggestions to improve this paper.