Research Article |
Corresponding author: Kevin D. Hyde ( kdhyde3@gmail.com ) Academic editor: George Mugambi
© 2018 Chayanard Phukhamsakda, Darbhe J. Bhat, Sinang Hongsanan, Jian-Chu Xu, Marc Stadler, Kevin D. Hyde.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Phukhamsakda C, Bhat DJ, Hongsanan S, Xu J-C, Stadler M, Hyde KD (2018) Two novel species of Neoaquastroma (Parabambusicolaceae, Pleosporales) with their phoma-like asexual morphs. MycoKeys 34: 47-62. https://doi.org/10.3897/mycokeys.34.25124
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The monotypic genus Neoaquastroma (Parabambusicolaceae, Pleosporales) was introduced for a microfungus isolated from a collection of dried stems of a dicotyledonous plant in Thailand. In this paper, we introduce two novel species, N. bauhiniae and N. krabiense, in this genus. Their asexual morphs comprise conidiomata with aseptate and hyaline conidia. Neoaquastroma bauhiniae has ascomata, asci and ascospores that are smaller than those of N. krabiense. Descriptions and illustrations of N. bauhiniae and N. krabiense are provided and the two species compared with the type species of the genus, N. guttulatum. Evidence for the introduction of the new taxa is also provided from phylogenetic analysis of a combined dataset of partial LSU, SSU, ITS and tef1 sequence data. The phylogenetic analysis revealed a distinct lineage for N. bauhiniae and N. krabiense within the family Parabambusicolaceae.
Dothideomycetes , holomorph, Massarineae , saprotrophs, Southeast Asia
Thailand is a highly biodiverse country in the tropics with hot and humid climate (
The family Parabambusicolaceae was introduced for a distinct phylogenetic lineage in the suborder Massarineae (Pleosporales) (
The purpose of this study is to describe two new species of Neoaquastroma from collections of dicotyledonous plants in Thailand. Phylogenetic analysis of combined of LSU, SSU, ITS and tef1 sequence data are provided.
Fresh specimens were collected from northern and southern part of Thailand during 2015–2017. The specimens were packed into brown paper bags for transport to the laboratory. Pure cultures were obtained from single ascospores on malt extract agar (MEA; 62 g/l) in distilled water following the method of Chomnunti et al. (2014). Cultures were incubated at 25 °C for up to 8 weeks. Induction of asexual reproduction has been adapted from
DNA was extracted from mycelium by using Biospin Fungus Genomic DNA Extraction Kit (BioFlux) (Hangzhou, P. R. China) and gene extraction kit (Bio Basic Inc., Canada). PCR amplification was carried out using primers LROR/LR5 for the nuclear ribosomal large subunit 28S rDNA gene (LSU), NS1/NS4 for the nuclear ribosomal small subunit 18S rDNA gene (SSU) and ITS5/ITS4 for internal transcribed spacer rDNA region (ITS1, 5.8S rDNA and ITS2); partial fragments of the translation elongation factor 1-alpha (tef1) gene region was amplified using primers EF1-983F and EF1-2218R (
SeqMan v. 7.0.0 (DNASTAR, Madison, WI) was used to assemble consensus sequences. Sequences of closely related strains were retrieved using BLAST searches against GenBank (http://www.ncbi.nlm.nih.gov). We also included the strains from
Maximum likelihood analyses (ML), including 1,000 bootstrap replicates, was performed using RAxML (
The best fitting substitution model for each single gene partition and the concatenated data set was determined in MrModeltest 2.3 (
Phylogenetic trees and data files were visualised in FigTree v. 1.4 (
The best scoring RAxML tree based on a combined partial LSU, SSU, ITS and tef1 gene datasets. Bootstrap values (BS) from maximum likelihood (ML, left) of more than 70% BS and Bayesian posterior probabilities (PP, right) greater than 0.90 are given above or below the nodes. The tree is rooted with Corynespora smithii (
The phylogenetic tree included 32 taxa representing six families from the suborder Massarineae. The phylogenetic trees from each individual data sets were initially generated, these were not significantly different (data not shown) and therefore combined data sets were performed. The combined dataset consisting 3,554 nucleotide characters, of which 1,001 characters corresponded to LSU, 1,038 characters to SSU, 508 characters to ITS and 929 characters to tef1. Corynespora smithii (
In this study, the family Parabambusicolaceae received high support in the phylogenetic analysis. While within the family, the taxa are separated into three subclades (Fig.
Taxa used in the phylogenetic analysis and their corresponding culture collections, and accession numbers used in this study.
Taxon | Culture accession number(s)1,2 | GenBank accession numbers | References | |||
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LSU | SSU | ITS | tef1 | |||
Aquastroma magniostiolata |
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AB807510 | AB797220 | LC014540 | AB808486 |
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Aquilomyces patris |
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KP184041 | KP184077 | KP184002 | – |
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Aquilomyces rebunensis |
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AB807542 | AB797252 | AB809630 | AB808518 |
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Bambusicola massarinia |
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JX442037 | JX442041 | NR_121548 | – |
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Clypeoloculus akitaensis |
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AB807543 | AB797253 | AB809631 | AB808519 |
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Corynespora cassiicola |
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GU301808 | GU296144 | – | GU349052 |
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Corynespora smithii |
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GU323201 | – | FJ852597 | GU349018 |
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Falciformispora lignatilis |
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GU371826 | GU371834 | KF432942 | GU371819 |
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Falciformispora senegalensis |
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KF015631 | KF015636 | KF015673 | KF015687 |
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Falciformispora tompkinsii |
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KF015625 | KF015639 | NR_132041 | KF015685 |
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Helicascus elaterascus | A22-5A = |
AY787934 | AF053727 | – | – |
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Massarina eburnea |
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GU301840 | GU296170 | – | GU349040 |
|
Monodictys sp. | KH 331 = MAFF 243826 | AB807553 | AB797263 | – | AB808529 |
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Monodictys sp. | JO 10 = MAFF 243825 | AB807552 | AB797262 | – | AB808528 |
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Morosphaeria ramunculicola |
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GQ925853 | GQ925838 | – | – |
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Morosphaeria velatispora |
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GQ925852 | GQ925841 | – | – | Suetrong et al. 2010 |
Multilocularia bambusae |
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KU693438 | KU693442 | KU693446 | – |
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Multiseptospora thailandica |
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KP744490 | KP753955 | KP744447 | – |
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Multiseptospora thailandica |
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KU693440 | KU693444 | KU693447 | KU705659 |
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Multiseptospora thailandica |
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KU693441 | KU693445 | KU693448 | KU705660 |
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Multiseptospora thysanolaenae |
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KU693439 | KU693443 | – | KU705658 |
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Neoaquastroma bauhiniae |
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MH023319 | MH023315 | MH025952 | MH028247 | This study |
Neoaquastroma bauhiniae |
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MH023320 | MH023316 | MH025953 | MH028248 | This study |
Neoaquastroma krabiense |
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MH023321 | MH023317 | MH025954 | MH028249 | This study |
Neoaquastroma guttulatum |
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KX949740 | KX949741 | KX949739 | KX949742 |
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Palmiascoma gregariascomum |
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KP744495 | KP753958 | KP744452 | – |
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Parabambusicola bambusina | KH 139 = MAFF 243823 | AB807537 | AB797247 | LC014579 | AB808512 |
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Parabambusicola bambusina | H 4321 = MAFF 239462 | AB807536 | AB797246 | LC014578 | AB808511 |
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Parabambusicola bambusina | KT 2637 = MAFF 243822 | AB807538 | AB797248 | LC014580 | AB808513 |
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Pseudomonodictys tectonae |
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KT285573 | KT285574 | – | KT285571 |
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Stagonospora pseudocaricis |
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KF251762 | – | KF251259 | – |
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Trematosphaeria pertusa |
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FJ201990 | FJ201991 | NR_132040 | KF015701 |
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Name refers the host from which this fungus was isolated.
THAILAND. Phrae Province: Song District, on dead twigs of Bauhinia variegata L. (Fabaceae), 25 July 2015, C. Phukhamsakda, S1-11,
Saprobic on dead twigs of Bauhinia variegata L. Sexual morph. Ascomata 113–190 μm high × 170–307 μm diam. (x̄ = 160 × 260 μm, n = 10), semi-immersed to immersed, solitary, scattered, subglobose to compressed, coriaceous, brown to dark brown, rough-walled, with short hyphae projecting from peridium, ostiolate. Ostiole 33 × 85 μm diam., centrally located, papillate, periphysoid. Peridium 8–25 μm wide (x̄ = 17, n = 30), with cells 3–8 μm wide, composed of 3 layers of reddish-brown to dark brown, cells of textura angularis, inner layer composed of hyaline gelatinous cells. Hamathecium composed of numerous, dense, long, 1–2.4 μm (x̄ = 1.7 μm, n = 50), narrow, filiform, transversely septate, branched, anastomosing, cellular psedoparaphyses. Asci 53–116 × 26–43 μm (x̄ = 98 × 37 μm, n = 30), 8-spored, bitunicate, fissitunicate, oboviod to oblong, with furcate pedicel, with ocular chamber visible when immature. Ascospores 37–46 × 9–16 μm (x̄ = 43 × 13 μm, n = 50), bi-seriate or overlapping, broad fusiform, narrow towards the apex, initially hyaline, becoming brown to dark brown at maturity, 4–7-transversely euseptate, constricted at the septa, with cell above central septum wider, rough-walled, indentations present, surrounded by 7–12 μm wide, mucilaginous sheath. Asexual morph coelomycetous. Pycnidia produced on mycelium in water agar. Conidiomata 33−49 μm high × 92–108 μm wide diam., pycnidial, dark brown to black, covered by dense vegetative hyphae, globose, in agar immersed to superficial, uniloculate, solitary to scattered, ostiolate. Conidiomatal wall thin, brown to black-walled with cells of textura angularis. Conidiophores reduced to conidiogenous cells. Conidiogenous cells 3−4 × 2−3.5 μm, enteroblastic, phialidic, integrated, oblong, hyaline, formed from the inner layer of pycnidium wall. Conidia 2–4 × 1.5–2 μm (x̄ = 3 × 1.7 μm, n = 100), broad-oblong to oval, hyaline, aseptate, smooth-walled.
Colonies on MEA, reaching 50 mm diam. after 4 weeks at 25 °C. Culture dark olive-green with black centre, with dense mycelia, circular, flat, umbonate, rough surface, dull, fimbriate, radially furrowed, covered with white aerial mycelium; mycelium strongly radiating into agar, yellow pigment diffusing in the agar; reverse black with radiating brown mycelium. Sexual and asexual morphs formed in culture. Morphology of sexual phase similar to those on substrate.
THAILAND, Phrae Province, Song District, on dead twigs of Bauhinia variegata L. (Fabaceae), 25 July 2015, C Phukhamsakda, S1-11 (isotype in
Phrae Province, Thailand.
Neoaquastroma bauhiniae is similar to N. krabiense, but the ascomata, asci and ascospores are smaller and the species also has a thinner peridium with 4−7 septate hyaline ascospores. Thus, Neoaquastroma bauhiniae is introduced as a second species in Neoaquastroma based on its unique morphology coupled with high support values from the phylogenetic analysis (100% ML/1.00 PP, Fig.
Neoaquastroma bauhiniae (
Name refers the location where this fungus was collected.
THAILAND, Krabi Province: Meuang district, on dead twigs of Barringtonia acutangula (Lecythidaceae), 16 December 2015, C. Phukhamsakda, Kr015,
Saprobic on dead twigs of Barringtonia acutangula (L.) Gaertn. Sexual morph. Ascomata 404–498 μm high × 290–319 μm diam. (x̄ = 426 × 300 μm, n = 10), immersed in bark, solitary, scattered or sometimes gregarious, compressed globose, with a flattened base, coriaceous, black to dark brown, smooth, papillate, ostiolate. Ostiole 137–146 μm high × 117–154 μm diam. (x̄ = 143 × 137 μm, n = 10), centrally located, oblong, filled with hyaline periphysoid. Peridium 45–73 μm wide (x̄ = 56, n = 30), cell width 3–12 (x̄ = 8 μm, n = 40) composed of 6–10(–13 at base) layers of blackish-brown to dark brown, with cells of textura angularis, outer layer heavily pigmented, inner layer composed of hyaline gelatinous cells. Hamathecium composed of numerous, dense, long, 1.6–2.4 μm (x̄ = 2 μm, n = 50), broad, filiform, transversely septate, branched, anastomosing, cellular pseudoparaphyses. Asci 95–169 × 29–45 μm (x̄ = 135 × 35 μm, n = 25), 8-spored, bitunicate, fisitunicate, oboviod to clavate, with furcate pedicel, ocular chamber clearly visible when immature. Ascospores 50–64 × 9–18 μm (x̄ = 57 × 13 μm, n = 50), bi-seriate or overlapping, fusiform, narrow towards the apex, hyaline, 5–8-transversely septate, constricted at the septa, cell above central septum slightly wider, rough-walled, indentations present when mature, granulate when stained with India ink, surrounded by 3–9 μm wide, mucilaginous sheath. Asexual morph coelomycetous, formed on rice straw agar. Conidiomata 84−90 μm high × 73–89 μm wide., pycnidial, uniloculate, confluent or scattered, superficial, covered with dense vegetative hyphae, globose, dark brown to black. Conidiomatal wall thin, brown to black-walled cells of textura angularis. Conidiophores reduced to conidiogenous cells. Conidiogenous cells 3−5 × 1.5−4 μm, enteroblastic, phialidic, integrated, broad-cylindrical to oblong, hyaline, formed from the inner layer of pycnidium wall. Conidia 2–4 × 1.5–2.5 μm (x̄ = 3 × 2 μm, n = 60), ellipsoidal to oblong, hyaline, aseptate, smooth-walled.
Colonies on MEA, reaching 50 mm diam. after four weeks at 25 °C. Culture grey, becoming dark-olive brown after four weeks, of dense mycelia, colonies circular, flat, umbonate, raised from the agar in the centre, surface rough, dull, covered with aerial mycelium, white mycelium radiating into the agar, pale orange pigment diffusing in the agar; reverse black, dense, circular, with irregular, fimbriate margin. Sexual and asexual morphs formed in culture. Morphology of sexual phase similar to those on the substrates.
THAILAND, Krabi Province, Meuang district, on dead twigs of Barringtonia acutangula (Lecythidaceae), 16 December 2015, C. Phukhamsakda, Kr015, (isotype in
Krabi Province, Thailand
Neoaquastroma krabiense was collected in the southern part of Thailand on dead twigs of Barringtonia acutangula. It is placed in Neoaquastroma based on its morphology of both sexual and asexual morph and close phylogenetic affinity to other species of Neoaquastroma. Neoaquastroma krabiense is distinct in that it has a flattened ascomata base and larger and more slender asci and ascospores than N. guttulatum and N. bauhiniae. The species formed an asexual morph in culture (Fig.
Neoaquastroma krabiense (
In the present study, we introduce two new species of Neoaquastroma, as N. bauhiniae and N. krabiense. The descriptions were made from fungi isolated from dicotyledonous plants in Thailand. The new species are introduced based on multi-locus phylogeny coupled with morphology that support their placement within Parabambusicolaceae.
Parabambusicolaceae is typified with Parabambusicola Tanaka & K. Hiray. The type of the genus was described originally as Massarina bambusina Teng (Teng, 1936) from bamboo. The family is characterised by ascomata surrounded by stromatic tissues and multiseptate, clavate to fusiform and hyaline ascospores (
Neoaquastroma was introduced as a distinct genus in Parabambusicolaceae, with N. guttulatum as the type species (
In the phylogenetic analyses of
The authors would like to thank the Royal Golden Jubilee PhD Program under Thailand Research Fund (RGJ) and the German Academic Exchange Service (DAAD) for a joint TRF-DAAD (PPP 2017–2018) academic exchange grant to K.D. Hyde and M. Stadler and the RGJ for a personal grant to C. Phukhamsakda (The scholarship no. PHD/0020/2557 to study towards a PhD). Dr. Shaun Pennycook for checking and suggesting Latin names of the new taxa. Dr. Rajesh Jeewon for his suggestions on the phylogenetic analysis.