Research Article |
Corresponding author: Yu-Cheng Dai ( yuchengdai@bjfu.edu.cn ) Academic editor: R. Henrik Nilsson
© 2018 Xiao-Hong Ji, Josef Vlasák, Xue-Mei Tian, Yu-Cheng Dai.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Ji X-H, Vlasák J, Tian X-M, Dai Y-C (2018) Three new species of Fomitiporella (Hymenochaetales, Basidiomycota) based on the evidence from morphology and DNA sequence data. MycoKeys 30: 73-89. https://doi.org/10.3897/mycokeys.30.23109
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Fomitiporella austroasiana, F. mangrovei and F. vietnamensis are described and illustrated as new species based on morphological characters and molecular evidence. They have annual to perennial, mostly resupinate basidiomata with grayish fresh pores, an indistinct subiculum, lack any kind of setae, have brownish, thick-walled basidiospores, and cause a white rot. The distinctive morphological characters of the new species and their related species are discussed. Phylogenies based on the nuclear ribosomal large subunit (28S) and the nuclear ribosomal ITS region show that these three new species form three distinct lineages in the Fomitiporella clade. A key to known species of Fomitiporella is given.
Hymenochaetaceae , Polypore, Taxonomy, Phylogenetic analysis
Fomitiporella Murrill was described by
As a continuation of the revision of Fomitiporella Murrill, phylogenetic inferences based on 28S and ITS DNA sequences revealed three new species. The taxonomic affinity and the evolutionary relationships among the new species and relates species are outlined.
Specimens studied are deposited in the herbarium of Beijing Forestry University (
A CTAB-based rapid plant genome extraction kit (Aidlab Biotechnologies Co., Ltd, Beijing) was used to obtain genomic DNA from dried specimens. The primer pair ITS4 and ITS5 was used for amplification of the ITS region (
Reference ITS and 28S sequences from various species of Fomitiporella, available from GenBank (
Information on the sequences used in this study. Type specimens are shown in bold.
Species | Location | Sample no. | GenBank accession no. | |
---|---|---|---|---|
ITS | 28S | |||
Fomitiporella americana | USA | JV 0312/26.6J | KX181291 | – |
F. americana | USA | JV 0212/8J | KX181292 | – |
F. americana | USA | JV 0904/149J | KX181293 | KX181329 |
F. austroasiana | China | Dai 16244 | MG657328 | MG657320 |
F. austroasiana | China | Dai 16168 | MG657329 | MG657321 |
F. austroasiana | Singapore | Dai 17868 | – | MG657322 |
F. austroasiana | Singapore | Dai 17871 | – | MG657323 |
F. austroasiana | Singapore | Dai 17879 | MG657330 | MG657324 |
F. caryophyllii | India | CBS 448.76 | AY558611 | AY059021 |
F. cavicola | UK | N 153 | – | AY059052 |
F. caviphila | China | LWZ 20130812-1 | – | KF729937 |
F. chinensis | China | Cui 11097 | KX181310 | KX181342 |
F. chinensis | China | Cui 11091 | – | KX181340 |
F. chinensis | China | LWZ 20130713-7 | KJ787817 | KJ787808 |
F. chinensis | China | LWZ 20130916-3 | KJ787818 | KJ787809 |
F. chinensis | China | Cui 11095 | – | KX181341 |
F. chinensis | China | Cui 8725 | – | KX181343 |
F. inermis | USA | JV 0509/57K | KX181305 | KX181346 |
F. inermis | USA | JV 1109/19A | KX181304 | – |
F. inermis | USA | JV 1009/56 | KX181306 | KX181347 |
F. mangrovei | USA | JV 1008/60 | KX181313 | KX181334 |
F. mangrovei | France | JV 1612/25-J | MG657331 | MG657325 |
F. micropora | USA | JV 1312/E2J | KX181294 | KX181333 |
F. micropora | USA | JV 1407/46 | KX181295 | KX181332 |
F. micropora | USA | JV 0409/6J | KX181296 | KX181331 |
F. micropora | USA | JV 1207/6.1J | KX181297 | KX181330 |
F. resupinata | Cameroon | Douanla-Meli 476 | KJ787822 | JF712935 |
F. sinica | China | Cui 10139 | KX181298 | – |
F. sinica | China | Dai 10461 | KX181300 | – |
F. sinica | China | LWZ 20130809-8 | KJ787820 | KJ787811 |
F. sinica | China | LWZ 20140625-2 | KX181301 | KX181320 |
F. sinica | China | LWZ 20140624-5 | KX181302 | KX181321 |
F. sinica | China | Dai 12450 | – | KX181326 |
F. sinica | China | Dai 13944 | – | KX181324 |
F. sp. 1 | China | Cui 6557 | KX181303 | – |
F. sp. 2 | China | Cui 11352 | KX181315 | KX181338 |
F. sp. 3 | China | LWZ 20140721-2 | KX181316 | KX181337 |
F. sp. 4 | Thailand | LWZ 20140729-22 | KX181317 | KX181339 |
F. sp. 5 | Chile | Fv.Ch-7 | – | DQ459301 |
F. sp. 6 | Ethiopia | AM 12 | JF895466 | JQ910908 |
F. sp. 7 | Ethiopia | AM 15 | JF895467 | JQ910909 |
F. sp. 8 | Ethiopia | AM 18 | JF895468 | JQ910910 |
F. sp. 9 | Ethiopia | AM 04 | KX181318 | KX181335 |
F. subinermis | China | Dai 15114 | KX181308 | KX181344 |
F. subinermis | China | Dai 15131 | KX181307 | KX181345 |
F. tenuissima | China | Dai 12365 | KC456244 | KC999901 |
F. tenuissima | China | Dai 12245 | KC456242 | KC999902 |
F. tenuissima | China | Dai 12255 | KC456243 | KC999903 |
F. tenuissima | China | Cui 10960 | KX181319 | – |
F. umbrinella | USA | 0509/114 | KX181314 | KX181336 |
F. umbrinella | USA | CBS 303.66 | – | AY059036 |
F. vietnamensis | Vietnam | Dai 18377 | MG657332 | MG657326 |
F. vietnamensis | Vietnam | Dai 18382 | MG657333 | MG657327 |
Fulvifomes fastuosus | Thailand | LWZ 20140801-1 | KR905675 | KR905669 |
F. robiniae | USA | CBS 211.36 | AY558646 | AF411825 |
Inonotus hispidus | Germany | MF 92-829 | – | AF311014 |
I. hispidus | – | CBS 386.61 | AY558602 | AY558664 |
I. obliquus | Germany | TW 705 | – | AF311017 |
I. quercustris | Argentina | 0193 | AY072026 | AY059050 |
I. andersonii | USA | CBS 312.35 | – | AY059041 |
Phylloporia bibulosa | Pakistan | Ahmad 27088 | – | AF411824 |
P. chrysites | Puerto Rico | N.W. Legon | – | AF411821 |
P. ephedrae | Turkmenistan | TAA 72-2 | – | AF411826 |
P. pectinata | UK | R. Coveny 113 | – | AF411823 |
P. ribis | Germany | MF 82-828 | – | AF311040 |
P. spathulata | Mexico | Chay 456 | – | AF411822 |
Phellinus laevigatus | Finland | TN 3260 | – | AF311034 |
P. laevigatus | – | 83-912 | AY340051 | – |
P. populicola | Germany | MF 84-61 | – | AF311038 |
P. populicola | Sweden | BRNM 714885 | GQ383706 | – |
Maximum likelihood (ML), maximum parsimony (MP) and Bayesian inference (BI) analyses were performed for the two datasets. The three phylogenetic analysis algorithms generated nearly identical topologies for each dataset, thus only the topology from the MP analysis is presented along with statistical values from the ML, MP and BI algorithms (Bootstrap support < 50 % and Bayesian posterior probabilities < 0.9 are not shown) at the nodes. MP analyses were performed using PAUP* 4.0b10 (
Fifty-six 28S rDNA sequences, including eight sequences generated in this study (GenBank accession numbers MG657320–MG657327) and forty-six ITS rDNA sequences, including six sequences generated in this study (GenBank accession numbers MG657328–MG657333) were used to infer the phylogenetic trees. Sequence information is provided in Table
The current phylogenies (Figs
Phylogeny of Fomitiporella inferred from the 28S dataset. The topology is that of the MP analysis, and statistical values (ML/MP/BI) are indicated for each node that simultaneously received BS from ML and MP not below 50 %, and BPP from BI not below 0.9. Phellinus laevigatus and P. populicola are used to root the tree. Branch lengths reflect the number of steps as indicated by the scale.
Phylogeny of Fomitiporella inferred from the ITS dataset. The topology is that of the MP analysis, and statistical values (ML/MP/BI) are indicated for each node that simultaneously received BS from ML and MP not below 50 %, and BPP from BI not below 0.9. Phellinus laevigatus and P. populicola are used to root the tree. Branch lengths reflect the number of steps as indicated by the scale.
CHINA. Hainan Province: Qiongzhong County, Limushan Forest Park, 15 Nov 2015, on fallen angiosperm trunk, Dai 16244 (
Etymology. Austroasiana (Lat.): referring to the distribution of the species in South Asia.
Basidiomata perennial, resupinate, hard corky and without odor or taste when fresh, woody hard when dry, up to 12 cm long, 5 cm wide and 12 mm thick at center. Pore surface ash-gray to grayish brown when fresh, grayish brown to olivaceous, more or less shiny and uncracked on drying; margin yellowish-brown, less than 1 mm wide, thinning out; pores circular, 8–10 per mm; dissepiments thick, entire; tubes woody hard, concolorous with pores, each layer up to 2 mm deep, white mycelial strands present in old tubes. Subiculum very thin to almost lacking.
Hyphal system dimitic; generative hyphae simple septate; skeletal hyphae dominant; tissue darkening but otherwise unchanged in KOH.
Generative hyphae frequent, hyaline to pale yellow, thin- to slightly thick-walled, occasionally branched, frequently simple septate 1.5–2.5 μm in diam; skeletal hyphae pale brown to brown, thick-walled to almost solid, aseptate, 2–3 μm in diam; setae absent; cystidioles ventricose with elongated apical portion, 7–12 × 3–4 µm; basidia barrel-shaped, with four sterigmata and a simple basal septum, 8–11 × 5–6 μm; basidioles similar to basidia in shape, but slightly smaller; small or big rhomboid crystals abundant.
Basidiospores subglobose, yellowish-brown, thick-walled, IKI–, CB(+), (3.5–)3.8–4(–4.3) × 3–3.5 μm, L = 4 μm, W = 3.29 μm, Q = 1.2–1.21 (n = 60/2).
CHINA. Hainan Province: Wuzhishan, Wuzhishan Nature Reserve, 14 Nov 2015, on fallen angiosperm trunk, Dai 16168 (
Mangrovei (Lat.): referring to the species growing in mangrove. Basidiomata annual, resupinate, inseparable, without odor or taste when fresh, woody hard on drying, up to 30 cm long, 7 cm wide and 5 mm thick at center. Pore surface ash-gray to bluish gray when fresh, becomes pale clay-buff to pale brown and uncracked when dry; pores angular, 3–5 per mm; dissepiments thin, more or less entire to slightly lacerate; tubes woody hard, dark brown, up to 5 mm long. Subiculum very thin to almost lacking.
Hyphal system monomitic; generative hyphae simple septate; tissue darkening but otherwise unchanged in KOH.
Generative hyphae hyaline to pale yellowish, thin- to thick-walled with a wide lumen, occasionally branched, frequently simple septate, interwoven, 1.5–3 mm in diam; setae absent; cystidioles absent; basidia barrel-shaped, with four sterigmata and a simple basal septum, 12–15 × 4–6 μm; basidioles barrel-shaped to pyriform, slightly smaller than basidia in size.
Basidiospores broadly ellipsoid, yellowish-brown, thick-walled, smooth, IKI–, CB+, (5–)5.5–6(–6.3) × (4–)4.2–4.8(–5) μm, L = 5.82 μm, W = 4.47 μm, Q = 1.26–1.31 (n = 60/2).
FRANCE. Guadeloupe: Grande-Terre, 25 Dec 2012, on Conocarpus erectus, JV 1612/25-J (
VIETNAM. Lam Dong Province, Lac Duong District, Bidoup Nui Ba National Park, 15 Oct 2017, on angiosperm tree, Dai 18377 (
Vietnamensis (Lat.): referring to the distribution of the species in Vietnam.
Basidiomata perennial, effused-reflexed, imbricate, hard corky and without odor or taste when fresh, projecting up to 1 cm long, 4 cm wide and 5.5 mm thick. Pileal surface bearing curry-yellow and black zones when fresh, becoming deep olive when dry; pore surface bluish gray to ash-gray when fresh, becomes dark brick, shiny and uncracked on drying; margin yellowish-brown, less than 1 mm wide, thinning out; pores angular to circular, 4–7 per mm; dissepiments thin, slightly lacerate. Tubes rust-brown, paler contrasting with pores, up to 5 mm long. Subiculum dull brown, hard corky, up to 0.5 mm.
Hyphal system dimitic; generative hyphae simple septate; skeletal hyphae dominant; tissue darkening but otherwise unchanged in KOH.
Generative hyphae rare, hyaline to pale yellowish, thick-walled, rarely branched and septate, 2–2.5 µm in diam; skeletal hyphae dominant, golden yellow, thick-walled with a wide lumen, unbranched, aseptate, more or less flexuous, interwoven, 2–3.5 µm in diam.
Generative hyphae frequent, hyaline to pale yellowish, thin- to fairly thick-walled, occasionally branched, frequently septate, 2–2.7 µm in diam; skeletal hyphae dominant, golden yellow, thick-walled, unbranched, aseptate, straight, more or less parallel along the tubes, 2–3 µm in diam; setae absent; cystidioles ventricose with elongated apical portion, 7–14 × 3–5 µm; basidia barrel-shaped, with four sterigmata and a simple basal septum, 10–16 × 5–6 μm; basidioles similar to basidia in shape, but slightly smaller.
Basidiospores broadly ellipsoid, yellowish-brown, thick-walled, IKI–, CB+, 4–4.8(–5) × (3–)3.2–3.7(–4) μm, L = 4.41 μm, W = 3.52 μm, Q = 1.23–1.28 (n = 60/2).
VIETNAM. Lam Dong Province, Lac Duong District, Bidoup Nui Ba National Park, 15 Oct 2017, on angiosperm tree, Dai 18382 (
Fomitiporella austroasiana fits well in Fomitiporella (redefined in
Fomitiporella mangrovei was previously treated as an undescribed taxon (Fomitiporella sp.1) because only a single collection from Florida (USA) was available (
Fomitiporella vietnamensis is distinct by a combination of perennial, effused-reflexed and imbricate basidiomata, shiny and uncracked pore surface, a dimitic hyphal system, and broadly ellipsoid basidiospores, 4–5 × 3–4 μm. Fomitiporella vietnamensis is closely related to F. caryophyllii (Racib.) T. Wagner & M. Fisch in the current phylogenies (Figs
The phylogenetic analyses based on 28S or the ITS dataset produced trees with near-identical topologies, and each of the three new species formed a distinct, well-supported clade.
An identification key to the accepted species of Fomitiporella is provided as follows:
1 | Basidiocarp pileate to effused-reflexed | 2 |
– | Basidiocarp resupinate | 4 |
2 | Pores 3–7 per mm; basidiospores > 4 µm long | 3 |
– | Pores 7–9 per mm; basidiospores < 4 µm long | F. caryophyllii |
3 | Basidiomata biennial; pores 3–4 per mm; basidiospores mostly > 4.5 µm long | F. chinensis |
– | Basidiomata perennial; pores 4–7 per mm; basidiospores mostly < 4.5 µm long | F. vietnamensis |
4 | Basidiomata annual; pore surface more or less grayish when fresh | 5 |
– | Basidiomata perennial; pore surface brown when fresh | 6 |
5 | Pore surface vinaceous gray when fresh; basidiospores < 5 µm long | F. tenuissima |
– | Pore surface ash-gray to bluish gray when fresh; basidiospores > 5 µm long | F. mangrovei |
6 | Cystidioles present | 7 |
– | Cystidioles absent | 9 |
7 | Pores 5–7 per mm; basidiospores mostly > 4.5 µm long | 8 |
– | Pores 8–10 per mm; basidiospores < 4.5 µm long | F. austroasiana |
8 | Basidiomata up to 3 mm thick at center; basidiospores broadly ellipsoid | F. inermis |
– | Basidiomata up to 10 mm thick at center; basidiospores subglobose | F. subinermis |
9 | Pores 5–6 per mm | 10 |
– | Pores 6–10 per mm | 11 |
10 | Basidiospores 4.7–5.5 µm long; growth mostly on Fagus | F. cavicola |
– | Basidiospores 3.6–4.6 µm long; growth mostly on Quercus | F. americana |
11 | Basidiospores ≤ 4 µm long | F. resupinata |
– | Basidiospores ≥ 4 µm long | 12 |
12 | Pores 6–8 per mm | 13 |
– | Pores 8–10 per mm | F. micropora |
13 | Basidiospores broadly ellipsoid to subglobose, CB(+) | 14 |
– | Basidiospores ellipsoid to broadly ellipsoid, CB– | F. umbrinella |
14 | Basidiospores < 4.5 µm long in average | F. sinica |
– | Basidiospores > 4.5 µm long in average | F. caviphila |
We are grateful to Professor Bao-Kai Cui and Dr. Shuang-Hui He (