Research Article |
Corresponding author: Chang-Lin Zhao ( fungichanglinz@163.com ) Academic editor: Cvetomir Denchev
© 2018 Zi-Qiang Wu, Tai-Min Xu, Shan Shen, Xiang-Fu Liu, Kai-Yue Luo, Chang-Lin Zhao.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Wu Z-Q, Xu T-M, Shen S, Liu X-F, Luo K-Y, Zhao C-L (2018) Elaphroporia ailaoshanensis gen. et sp. nov. in Polyporales (Basidiomycota). MycoKeys 29: 81-95. https://doi.org/10.3897/mycokeys.29.22086
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A new poroid wood-inhabiting fungal genus, Elaphroporia, typified by E. ailaoshanensis sp. nov., is proposed based on a combination of morphological features and molecular evidence. The genus is characterised by an annual growth habit, resupinate basidiocarps, becoming rigid and light-weight up on drying, a monomitic hyphal system with thick-walled generative hyphae bearing both clamp connections and simple septa, slightly amyloid, CB+ and ellipsoid, hyaline, thin-walled, smooth and IKI–, CB– basidiospores. Sequences of ITS and LSU nrRNA gene regions of the studied samples were generated, and phylogenetic analyses were performed with maximum likelihood, maximum parsimony and bayesian inference methods. The phylogenetic analysis based on molecular data of ITS+nLSU sequences showed that Elaphroporia belonged to the residual polyporoid clade and was closely related to Junghuhnia crustacea. Further investigation was obtained for more representative taxa in the Meruliaceae based on ITS+nLSU sequences, in which the result demonstrated that the genus Elaphroporia formed a monophyletic lineage with a strong support (100 % BS, 100 % BP, 1.00 BPP) and then grouped with Flaviporus and Steccherinum.
Meruliaceae , phylogeny, polypore, taxonomy, wood-inhabiting fungi
The Polyporales is a large group of Agaricomycetes and includes more than 1800 taxa at species level belonging to 216 genera and 13 families (
Molecular systematics has played a powerful role in inferring phylogenies within fungal groups since the early 1990s (
Wood-rotting fungi is a cosmopolitan group and it has a rich diversity on the basis of growing on boreal, temperate, subtropical, and tropical vegetations (
Morphological studies. The specimens studied are deposited at the herbarium of Southwest Forestry University (
DNA extraction and sequencing. CTAB rapid plant genome extraction kit-DN14 (Aidlab Biotechnologies Co., Ltd, Beijing) was used to obtain genomic DNA from dried specimens, according to the manufacturer’s instructions with the modification that a small piece of dried fungal specimen (about 30 mg) was ground to powder with liquid nitrogen. The powder was transferred to a 1.5 ml centrifuge tube, suspended in 0.4 ml of lysis buffer and incubated in a 65 °C water bath for 60 min. After that, 0.4 ml phenol-chloroform (24:1) was added to each tube and the suspension was shaken vigorously. After centrifugation at 13 000 rpm for 5 min, 0.3 ml supernatant was transferred to a new tube and mixed with 0.45 ml binding buffer. The mixture was then transferred to an adsorbing column (AC) for centrifugation at 13 000 rpm for 0.5 min. Then, 0.5 ml inhibitor removal fluid was added in AC for a centrifugation at 12 000 rpm for 0.5 min. After washing twice with 0.5 ml washing buffer, the AC was transferred to a clean centrifuge tube, and 100 ml elution buffer was added to the middle of the adsorbed film to elute the genome DNA. The ITS region was amplified with primer pairs ITS5 and ITS4 (
A list of species, specimens and GenBank accession number of sequences used in this study.
Species name | Sample no. | GenBank accession no. | References | |
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ITS | nLSU | |||
Abortiporus biennis | TFRI 274 | EU232187 | EU232235 |
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Antrodia albida | CBS 308.82 | DQ491414 | AY515348 |
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Antrodia heteromorpha | CBS 200.91 | DQ491415 | AY515350 |
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Antrodiella americana | Gothenburg 3161 | JN710509 | JN710509 |
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Antrodiella pallasii | Renvall 89a | AF126896 | – |
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Antrodiella semisupina | FCUG 960 | EU232182 | EU232266 |
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Antrodiella sp. | X 418 | JN710523 | JN710523 |
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Atraporiella neotropica | Ryvarden 44447 | HQ659221 | HQ659221 |
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Ceriporia viridans | Dai 7759 | KC182777 | – |
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Ceriporiopsis balaenae | H7002389 | FJ496669 | FJ496717 |
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Ceriporiopsis consobrina | Rivoire 977 | FJ496667 | FJ496716 |
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Ceriporiopsis gilvescens | BRNM 667882 | FJ496685 | FJ496719 |
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Ceriporiopsis gilvescens | BRNM 710166 | FJ496684 | FJ496720 |
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Ceriporiopsis gilvescens | Yuan 2752 | KF845946 | KF845953 | Zhao and Cui (2014) |
Ceriporiopsis guidella | HUBO 7659 | FJ496687 | FJ496722 |
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Cinereomyces lindbladii | FBCC 177 | HQ659223 | HQ659223 |
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Climacocystis borealis | KH 13318 | JQ031126 | JQ031126 |
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Coriolopsis caperata | LE(BIN)-0677 | AB158316 | AB158316 |
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Dacryobolus karstenii | KHL 11162 | EU118624 | EU118624 |
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Daedalea quercina | DSM 4953 | DQ491425 | DQ491425 |
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Diplomitoporus flavescens | X 84 | FN907908 | – |
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Earliella scabrosa | PR1209 | JN165009 | JN164793 | Justo and Hibbett (2011) |
Etheirodon fimbriatum | Larsson 11905 | JN710530 | JN710530 |
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Flabellophora sp.1 | X 1357 | JN710533 | JN710533 |
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Flabellophora sp.2 | X 340 | JN710534 | JN710534 |
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Flabellophora sp.3 | X 1277 | JN710535 | JN710535 |
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Flabellophora sp.4 | X 439 | JN710536 | JN710536 |
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Flaviporus brownii | X 1216 | JN710537 | JN710537 |
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Flaviporus liebmannii | X 251 | JN710541 | JN710541 |
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Flaviporus liebmannii | X 249 | JN710539 | JN710539 |
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Flaviporus liebmannii | X 666 | JN710540 | JN710540 |
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Fomitopsis pinicola | CBS 221.39 | DQ491405 | DQ491405 |
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Fomitopsis rosea | ATCC 76767 | DQ491410 | DQ491410 |
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Fragiliporia fragilis | Dai 13080 | KJ734260 | KJ734264 |
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Fragiliporia fragilis | Dai 13559 | KJ734261 | KJ734265 |
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Fragiliporia fragilis | Dai 13561 | KJ734262 | KJ734266 |
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Frantisekia mentschulensis | BRNM 710170 | FJ496728 | – |
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Frantisekia mentschulensis | 1377 | JN710544 | JN710544 |
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Ganoderma lingzhi | Wu 1006-38 | JQ781858 | – |
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Gelatoporia subvermispora | BRNU 592909 | FJ496694 | FJ496706 |
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Gloeoporus dichrous | KHL 11173 | EU118627 | EU118627 |
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Grammothelopsis subtropica | Cui 9035 | JQ845094 | JQ845097 |
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Heterobasidion annosum | PFC 5252 | KC492906 | KC492906 |
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Hornodermoporus martius | MUCL 41677 | FJ411092 | FJ393859 |
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Hypochnicium bombycinum | MA 15305 | FN552537 | – |
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Hypochnicium lyndoniae | NL 041031 | JX124704 | JX124704 |
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Junghuhnia crustacea | X 1127 | JN710554 | JN710554 |
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Junghuhnia crustacea | X 262 | JN710553 | JN710553 |
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Junghuhnia micropora | Spirin 2652 | JN710559 | JN710559 |
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Junghuhnia nitida | KHL 11903 | EU118638 | EU118638 |
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Loweomyces fractipes | X 1149 | JN710570 | JN710570 |
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Loweomyces fractipes | X 1253 | JN710569 | JN710569 |
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Loweomyces fractipes | X 1250 | JN710568 | JN710568 |
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Mycoacia fuscoatra | KHL 13275 | JN649352 | JN649352 |
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Mycoacia nothofagi | KHL 13750 | GU480000 | GU480000 |
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Nigroporus vinosus | X 839 | N710576 | N710576 |
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Nigroporus vinosus | 8182 | JN710728 | JN710728 |
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Obba rivulosa | KCTC 6892 | FJ496693 | FJ496710 |
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Obba valdiviana | FF 503 | HQ659235 | HQ659235 |
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Panus conchatus | X 1234 | JN710579 | JN710579 |
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Panus strigellus | INPA 243940 | JQ955725 | JQ955732 |
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Perenniporia medulla-panis | MUCL 49581 | FJ411088 | FJ393876 |
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Perenniporiella neofulva | MUCL 45091 | FJ411080 | FJ393852 |
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Phlebia unica | KHL 11786 | EU118657 | EU118657 |
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Phlebia radiata | UBCF 19726 | HQ604797 | HQ604797 |
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Physisporinus sanguinolentus | BRNM 699576 | FJ496671 | FJ496725 |
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Physisporinus vitreus | 3163 | JN710580 | JN710580 |
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Piloporia sajanensis | Mannine 2733a | HQ659239 | HQ659239 |
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Podoscypha venustula | CBS 65684 | JN649367 | JN649367 |
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Polyporus tuberaster | CulTENN 8976 | AF516598 | AJ488116 |
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Postia guttulata | KHL 11739 | EU11865 | EU11865 |
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Pseudolagarobasidium acaciicola | CBS 115543 | DQ517883 | – |
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Pseudolagarobasidium acaciicola | CBS 115544 | DQ517882 | – |
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Pseudolagarobasidium belizense | CFMR 04-31 | JQ070173 | – |
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Skeletocutis amorpha | Miettinen 11038 | FN907913 | FN907913 |
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Skeletocutis portcrosensis | LY 3493 | FJ496689 | FJ496689 |
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Skeletocutis jelicii | H 6002113 | FJ496690 | FJ496727 |
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Skeletocutis novae-zelandiae | Ryvarden 38641 | JN710582 | JN710582 |
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Spongipellis spumeus | PRM 891931 | HQ728287 | HQ729021 |
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Spongipellis spumeus | BRNM 712630 | HQ728288 | HQ728288 |
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Spongipellis spumeus | BRNM 734877 | HQ728283 | HQ728283 |
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Steccherinum fimbriatum | KHL 11905 | EU118668 | EU118668 |
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Steccherinum ochraceum | Ryberg s.n. | EU118669 | EU118670 |
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Steccherinum ochraceum | KHL 11902 | JQ031130 | JQ031130 |
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Stereum hirsutum | NBRC 6520 | AB733150 | AB733325 |
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Truncospora ochroleuca | MUCL 39726 | FJ411098 | FJ393865 |
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Tyromyces chioneus | Cui 10225 | KF698745 | KF698756 |
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Xanthoporus syringae | X 339 | JN710606 | JN710606 |
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Xanthoporus syringae | Cui 2177 | DQ789395 | – |
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Xanthoporus syringae | Gothenburg 1488 | JN710607 | JN710607 |
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Elaphroporia ailaoshanensis | CLZhao 595 | MG231568 | MG748854 | Present study |
Elaphroporia ailaoshanensis | CLZhao 596 | MG231572 | MG748855 | Present study |
Elaphroporia ailaoshanensis | CLZhao 597 | MG231847 | MG748856 | Present study |
Elaphroporia ailaoshanensis | CLZhao 598 | MG231823 | MG748857 | Present study |
Phylogenetic analysis. Sequencher 4.6 (GeneCodes, Ann Arbor, MI, USA) was used to edit the DNA sequence. Sequences were aligned in MAFFT 6 (Katoh and Toh 2008, http://mafft.cbrc.jp/alignment/server/) using the “G-INS-I” strategy and manually adjusted in BioEdit (
Maximum parsimony strict consensus tree illustrating the phylogeny of Elaphroporia ailaoshanensis and related species in Polyporales based on ITS+nLSU sequences. Branches are labelled with parsimony bootstrap values (before slash) higher than 50 % and Bayesian posterior probabilities (after slash) equal to and more than 0.95. Clade names follow
Maximum parsimony strict consensus tree illustrating the phylogeny of Elaphroporia ailaoshanensis and related species in the residual polyporoid clade based on ITS+nLSU sequences. Branches are labelled with parsimony bootstrap values (before slash) higher than 50% and Bayesian posterior probabilities (after slash) equal to and more than 0.95. Clade names follow
Maximum parsimony analysis was applied to the ITS+nLSU dataset sequences. Approaches to phylogenetic analysis followed
MrModeltest 2.3 (
The ITS+nLSU dataset (Fig.
The phylogenetic tree (Fig.
The ITS+nLSU (Fig.
A further phylogeny (Fig.
Differs from other genera in Polyporales by resupinate basidiocarps becoming rigid and light-weight upon drying, a monomitic hyphal system, thick-walled generative hyphae bearing both clamp connections and simple septa and hyaline, thin-walled, smooth, IKI–, CB– basidiospores.
Elaphroporia ailaoshanensis Z.Q. Wu & C.L. Zhao.
Elaphroporia (Lat.): referring to the basidiocarps light-weight upon drying.
Basidiocarps annual, resupinate, becoming rigid and light-weight up on drying. Pore surface cream to pale yellow when fresh, turning to yellow upon drying. Hyphal system monomitic; generative hyphae thick-walled bearing both clamp connections and simple septa, slightly amyloid, CB+. Basidiospores ellipsoid, hyaline, thin-walled, smooth, IKI–, CB–.
This species is distinguished by the cream to yellow pore surface upon drying; pores angular, 7–9 per mm. Hyphal system monomitic; generative hyphae thick-walled bearing both clamp connections and simple septa, slightly amyloid, CB+. Basidiospores ellipsoid, hyaline, thin-walled, smooth, IKI–, CB–, 1.9–2.5 × 1.5–2 µm.
CHINA. Yunnan Province: Jingdong county, Ailaoshan Nature Reserve, 2 October 2016, on the angiosperm trunk, CLZhao 595 (Holotype in
Ailaoshanensis (Lat.): referring to the locality (Ailaoshan) of the type specimens.
Annual, resupinate, easy to separate from substrate, soft corky when fresh, without odour or taste when fresh, becoming rigid and light-weight up on drying, up to 5 cm long, 3.5 cm wide, 4 mm thick at centre. Pore surface cream to pale yellow when fresh, turning to yellow upon drying; pores angular, 7–9 per mm; dissepiments thin, entire. Sterile margin narrow, cream, up to 1 mm wide. Subiculum thin, cream, corky, up to 0.2 mm thick. Tubes concolorous with pore surface, hard corky, up to 3.8 mm long.
Hyphal system monomitic; generative hyphae thick-walled, slightly amyloid, CB+; tissues unchanged in KOH.
Generative hyphae hyaline, thick-walled bearing both clamp connections and simple septa, simple septa more frequent than clamps, occasionally branched, interwoven, 3.5–5.5 µm in diam.
Generative hyphae hyaline, thick-walled bearing simple septa only, occasionally branched, 3–5 µm in diameter. Cystidia and cystidioles absent; basidia clavate, with four sterigmata and a basal clamp connection, 10.5–14.5 × 3.5–4.5 µm; basidioles dominant, in shape similar to basidia, but slightly smaller.
Basidiospores ellipsoid, hyaline, thin-walled, smooth, IKI–, CB–, (1.7–)1.9–2.5(–2.9) × (1.3–)1.5–2(–2.2) µm, L = 2.29 µm, W = 1.74 µm, Q = 1.33–1.81 (n = 120/4).
(paratypes). CHINA. Yunnan Province: Jingdong county, Ailaoshan Nature Reserve, 2 October 2016, on the angiosperm trunk, CLZhao 596, CLZhao 597, CLZhao 598 (
In the present study, a new genus, Elaphroporia, is described based on phylogenetic analyses and morphological characters. The genus has unique morphological characters in Meruliaceae.
Previously, seven clades were found in the Polyporales: antrodia clade, core polyporoid clade, fragiliporia clade, gelatoporia clade, phlebioid clade, residual polyporoid clade and tyromyces clade (
Morphologically, Elaphroporia resembles Ceriporia Donk and Phlebiporia Jia J. Chen, B.K. Cui & Y.C. Dai. Ceriporia is similar to Elaphroporia in an annual growth habit with poroid hymenophore, a monomitic hyphal structure and hyaline, thin-walled and smooth basidiospores. In addition, both genera cause a white rot. However, Ceriporia differs from Elaphroporia by the generative hyphae IKI–, CB– (
Polypores are an extensively studied group of Basidiomycota (
We express our gratitude to Yong-He Li (Yunnan Academy of Biodiversity, Southwest Forestry University, P.R. China) for his support on molecular work. The research is supported by the National Natural Science Foundation of China (Project No. 31700023) and the Science Foundation of Southwest Forestry University (Project No. 111715) and the Science and Technology Talent Support Programme of Three Areas in Yunnan Province (Project No. 21700329).