Research Article |
|
Corresponding author: Xin-Cun Wang ( wangxc@im.ac.cn ) Academic editor: Xinlei Fan
© 2025 Lu-Yao Peng, Wen-Ying Zhuang, Xin-Cun Wang.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Peng L-Y, Zhuang W-Y, Wang X-C (2025) New species of Aspergillus in sections Cavernicolarum and Nigri from terrestrial ecosystems of China (Eurotiales, Aspergillaceae). MycoKeys 124: 275-290. https://doi.org/10.3897/mycokeys.124.172775
|
Aspergillus species are of great industrial, agricultural, and medicinal importance. During investigations on the biodiversity of Aspergillaceae, two species of Aspergillus isolated from soil samples in China were identified as new to science based on sequence analyses and morphological comparisons. Aspergillus hebeiensis from a traditional cultural and Buddhist heritage site is the second member of the series Hainanici in section Cavernicolarum of subgenus Nidulantes, while A. xishuangbannaensis from a tropical nature reserve is classified in subgenus Circumdati, section Nigri, series Japonici. Detailed descriptions and illustrations of both species are provided, and the ecological functions of their habitats are also discussed.
Aspergillaceae, biodiversity, Eurotiales, phylogeny, taxonomy
Species of Aspergillus P. Micheli ex Haller are ubiquitous in various environments and have a long history of exploitation by humans. Some species have been used for food fermentations for centuries, especially in East Asia. Aspergillus oryzae (Ahlb.) Cohn and A. sojae Sakag. & K. Yamada ex Murak. play crucial roles in the production of rice wine, soybean pastes, and soy sauce (
The genus Aspergillus was originally introduced in 1729 and validated in 1768. It was divided into six subgenera, 27 sections, and 75 series, with 446 species recognized (
During investigations on the biodiversity of Aspergillaceae in China, two species of Aspergillus isolated from soil were identified as new to science based on sequence analyses and morphological comparisons. Detailed descriptions and illustrations are provided.
Cultures were isolated from soil samples collected from Hebei and Yunnan provinces, China. Dried cultures were preserved in the Herbarium Mycologicum Academiae Sinicae (HMAS, Beijing, China), and the living ex-type strains were deposited in the China General Microbiological Culture Collection Center (CGMCC, Beijing, China).
Morphological characteristics were observed and recorded according to standardized methods (
DNA was extracted from living cultures grown on PDA for 7 days using the Plant Genomic DNA Kit (DP305; TIANGEN Biotech, Beijing, China). Polymerase chain reaction (PCR) amplifications of internal transcribed spacer (ITS), beta-tubulin (BenA), calmodulin (CaM), and RNA polymerase II second-largest subunit (RPB2) were conducted using routine methods (
The newly generated forward and reverse sequences in this study were assembled using SeqMan v. 7.1.0 (DNASTAR Inc., Madison, WI, USA). The assembled sequences were deposited in GenBank, with accession numbers shown in bold (Tables
Species and sequences used in the phylogenetic analyses for Aspergillus subgenus Nidulantes section Cavernicolarum.
| Series | Species | Strain | Locality | Substrate | ITS | BenA | CaM | RPB2 |
|---|---|---|---|---|---|---|---|---|
| Cavernicolarum | A. californicus Frisvad et al., 2011 | CBS 123895 T | USA | chaparral of Adenostoma fasciculatum | FJ531153 | FJ531180 | FJ531128 | MN969065 |
| A. cavernicola Lörinczi, 1969 | CBS 117.76 T | Romania | on walls of cave | EF652508 | EF652332 | EF652420 | EF652244 | |
| A. kassunensis Baghd., 1968 | CBS 419.69 T | Syria | soil | EF652461 | EF652285 | EF652373 | EF652197 | |
| A. subsessilis Raper & Fennell, 1965 | CBS 502.65 T | USA | desert soil | EF652485 | EF652309 | EF652397 | EF652221 | |
| Egyptiaci | A. egyptiacus Moub. & Mustafa, 1972 | CBS 656.73 T | Egypt | sandy soil | EF652504 | EF652328 | EF652416 | EF652240 |
| Hainanici | A. hainanicus X.C. Wang & W.Y. Zhuang, 2022 | CGMCC 3.20888 T | China: Hainan | sandy soil | OM414846 | OM475626 | OM475630 | OM475634 |
| A. hebeiensis X.C. Wang, L.Y. Peng & W.Y. Zhuang, sp. nov. | JJJ40-31 T | China: Hebei | soil under Platycladus orientalis | PV883250 | PV877068 | PV877070 | PV877073 | |
| JJJ40-12 | China: Hebei | soil under Platycladus orientalis | PV883251 | n.a. | PV877071 | PV877074 |
Species and sequences used in the phylogenetic analyses for Aspergillus subgenus Circumdati section Nigri.
| Series | Species | Strain | Locality | Substrate | ITS | BenA | CaM | RPB2 |
|---|---|---|---|---|---|---|---|---|
| Japonici | A. aculeatinus Noonim et al., 2008 | CBS 121060 T | Thailand | dried parchment and green beans of Coffea arabica | EU159211 | EU159220 | EU159241 | HF559233 |
| A. aculeatus Iizuka, 1953 | CBS 172.66 T | Japan | unknown | EF661221 | HE577806 | EF661148 | EF661046 | |
| A. brunneoviolaceus Bat. & H. Maia, 1955 | CBS 621.78 T | Brazil | gills of Osteichthyes | AJ280003 | EF661105 | EF661147 | EF661045 | |
| A. dhakephalkarii Rajeshk. et al., 2025 | NFCCI 5750 T | India | rhizosphere soil associated with Anthurium andraeanum | PP741453 | PP739067 | PP739063 | PP739059 | |
| A. floridensis Jurjevic et al., 2012 | NRRL 62478 T | USA | air | MN431366 | HE984412 | HE984429 | HE984376 | |
| A. hydei Doilom, 2020 | KUMCC 18-0196 T | China: Yunnan | air under Quercus variabilis | MT152332 | MT161679 | MT178247 | MT384370 | |
| A. indologenus Frisvad et al., 2011 | CBS 114.80 T | India | soil | AJ280005 | AY585539 | AM419750 | HE984366 | |
| A. japonicus Saito, 1906 | CBS 114.51 T | unknown | unknown | AJ279985 | HE577804 | FN594551 | MN969079 | |
| A. labruscus Fungaro et al., 2017 | IBT 33586 T | Brazil | fruit of Vitis labrusca | KU708544 | KT986014 | KT986008 | MN969196 | |
| A. oxumiae C.N. Figueiredo et al., 2020 | CCDCA 11546 T | Brazil | soil cultivated with Agave sisalana | MN431160 | n.a. | MN531842 | MN521389 | |
| A. patriciawiltshireae Rajeshk. et al., 2025 | NFCCI 5959 T | India | soil | PQ826401 | PQ855384 | PQ855382 | PQ855386 | |
| A. saccharolyticus A. Sørensen et al., 2011 | CBS 127449 T | Denmark | toilet seat of treated Quercus wood | HM853552 | HM853553 | HM853554 | HF559235 | |
| A. serratalhadensis L.F. Oliveira et al., 2018 | URM 7866 T | Brazil | soil | MH169127 | LT993222 | LT993223 | LT995971 | |
| A. trinidadensis Jurjevic et al., 2012 | NRRL 62479 T | Trinidad-Tobago | air | MN431380 | HE984420 | HE984434 | HE984379 | |
|
A. uvarum G. |
CBS 121591 T | Italy | grape berries | AM745757 | AM745751 | AM745755 | HE984370 | |
| A. xishuangbannaensis X.C. Wang, L.Y. Peng & W.Y. Zhuang, sp. nov. | ZYN05-01 T | China: Yunnan | soil in limestone seasonal rainforest | PV883252 | PV877069 | PV877072 | PV877075 | |
| Nigri | A. niger Tiegh., 1867 | CBS 554.65 T | France | unknown | EF661186 | EF661089 | EF661154 | EF661058 |
To determine the species identities of the investigated strains, the single-gene datasets (ITS, BenA, CaM, and RPB2) and the concatenated three-locus (BenA + CaM + RPB2) dataset were compiled and analyzed. The detailed characteristics of the datasets are listed in Table
| Dataset | Gene fragment | No. of seq. | Length of alignment (bp) | No. of variable sites | No. of parsimony-informative sites | Model for BI |
|---|---|---|---|---|---|---|
| Cavernicolarum | ITS | 8 | 548 | 64 | 44 | |
| BenA | 7 | 471 | 150 | 83 | ||
| CaM | 8 | 553 | 204 | 129 | ||
| RPB2 | 8 | 1071 | 241 | 151 | ||
| BenA+CaM+RPB2 | 8 | 2095 | 595 | 363 | TIMef+I | |
| Japonici | BenA | 16 | 530 | 235 | 108 | |
| CaM | 17 | 580 | 245 | 128 | ||
| RPB2 | 17 | 1052 | 273 | 155 | ||
| BenA+CaM+RPB2 | 17 | 2162 | 753 | 391 | TrN+I+G |
In the phylogeny of section Cavernicolarum (Fig.
Maximum likelihood phylogeny of Aspergillus subgenus Nidulantes section Cavernicolarum inferred from the combined BenA, CaM, and RPB2 dataset. Bootstrap values ≥ 70% (left) or posterior probability values ≥ 0.95 (right) are indicated at nodes. Asterisks denote 100% bootstrap or 1.00 posterior probability.
In the phylogenetic tree of section Nigri series Japonici (Fig.
Maximum likelihood phylogeny of Aspergillus subgenus Circumdati section Nigri series Japonici inferred from the combined BenA, CaM, and RPB2 dataset. Bootstrap values ≥ 70% (left) or posterior probability values ≥ 0.95 (right) are indicated at nodes. Asterisks denote 100% bootstrap or 1.00 posterior probability.
The specific epithet refers to the type locality.
In Aspergillus subgenus Nidulantes section Cavernicolarum series Hainanici.
China • Hebei Province, Handan City, Fengfeng Mining District, Xiangtangshan Caves, one of the First Batch of Key Cultural Relics Units under National Protection of China, Northern Xiangtangshan, 36°32'2"N, 114°9'40"E, in soil under Platycladus orientalis (L.) Franco, 17 July 2023, Xin-Cun Wang, culture, Lu-Yao Peng, JJJ40-31 (holotype HMAS 354080, ex-type strain CGMCC 3.29151).
7 days, 25 °C (unless stated otherwise): CYA 15–17 mm; CYA 37 °C 12–15 mm; MEA 19–20 mm; YES 18–19 mm; PDA 16–17 mm.
On CYA 25 °C, 7 days: Colonies nearly circular, slightly concave at centers; margins moderately wide, entire; mycelia white and then yellow; texture velutinous; sporulation sparse; conidia en masse greyish; soluble pigments absent; exudates absent; reverse buff to yellow brown.
On CYA 37 °C, 7 days: Colonies nearly circular or irregular, slightly protuberant at centers; margins narrow to moderately wide, fimbriate; mycelia white and then buff; texture velutinous; sporulation sparse; conidia en masse brownish; soluble pigments absent; exudates absent; reverse buff to yellow brown.
On MEA 25 °C, 7 days: Colonies irregular, protuberant; margins narrow, entire; mycelia white and then cream; texture velutinous; sporulation sparse; conidia en masse creamish; soluble pigments absent; exudates absent; reverse buff to yellow brown.
On YES 25 °C, 7 days: Colonies nearly circular, concave at centers, radially sulcate; margins narrow, entire; mycelia pale; texture velutinous; sporulation sparse; conidia en masse greyish; soluble pigments absent; exudates absent; reverse yellow brown to orange brown.
On PDA 25 °C, 7 days: Colonies nearly circular, protuberant; margins narrow, entire; mycelia white and then cream; texture velutinous; sporulation sparse; conidia en masse creamish to brownish; soluble pigments yellow; exudates absent; reverse buff to yellow brown, occasionally with dark brown sectors.
Conidial heads radiate; stipes short, 65–110 (–140) × 4.0–7.0 µm, not septate, walls thick, smooth, brown; vesicles 8.5–13 × 8.5–13 µm, subglobose to globose; biseriate; metulae 5.0–8.5 × 3.5–6.5 µm, cylindrical to obovate, covering almost a half to two-thirds surface of the vesicle; phialides 5.5–8.0 × 3.5–4.0 µm, flask-shaped; conidia 6.0–7.5 µm, subglobose, vivid green, strongly echinulate.
China • Hebei Province, Handan City, Fengfeng Mining District, Xiangtangshan Caves, one of the First Batch of Key Cultural Relics Units under National Protection of China, Northern Xiangtangshan, 36°32'2"N, 114°9'40"E, in soil under Platycladus orientalis (L.) Franco, 17 July 2023, Xin-Cun Wang, culture, Yi-Fan Wang, JJJ40-12.
This species is the second member of series Hainanici and sister to A. hainanicus (Fig.
Morphological comparisons of the new species and their closely related species.
| Series | Species | CYA 25 °C (mm) | CYA 37 °C (mm) | MEA (mm) | YES (mm) | Vesicles (µm) | Conidia shape | Conidia color | Conidia wall | Conidia size (µm) | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Hainanici | A. hebeiensis | 15–17 | 12–15 | 19–20 | 18–19 | 8.5–13 × 8.5–13 | subglobose | vivid green | strongly echinulate | 6.0–7.5 | This study |
| A. hainanicus | 18–20 | no growth | 16–17 | 21–22 | 7.5–13 × 9.0–13 | subglobose | hyaline | strongly echinulate | 6.0–9.5 |
|
|
| Japonici | A. xishuangbannaensis | 64–70 | 35–57 | 55–60 | 68–70 | 62–80 × 60.5–77.5 | subglobose | brown | echinulate | 4.5–5.0 × 4.0–5.0 | This study |
| A. japonicus | 60–70 | 20–50 | 60–70 | n.a. | 20–35 | globose to subglobose | brown | echinulate | 3.5–5.0 |
|
|
| A. uvarum | 90 | 16–22 | 90 | n.a. | 20–30 | globose to subglobose | brown to black | conspicuously spinose | 3.0–4.0 |
|
|
| A. indologenus | 63–70 | n.a. | 57–70 | 76–80 | 20–45 | globose | brown | coarsely roughened to echinulate | 3.0–4.0 |
|
The specific epithet refers to the type locality.
In Aspergillus subgenus Circumdati section Nigri series Japonici.
China • Yunnan Province, Xishuangbanna Dai Autonomous Prefecture, Mengla County, Menglun Town, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Green Stone Forest, 21°54'39"N, 101°17'00"E, in soil of limestone seasonal rainforest, 28 May 2024, Zhao-Qing Zeng, culture, Xiao Mou, ZYN05-01 (holotype HMAS 354081, ex-type strain CGMCC 3.29152).
7 days, 25 °C (unless stated otherwise): CYA 64–70 mm; CYA 37 °C 35–57 mm; MEA 55–60 mm; YES 68–70 mm; PDA 66–70 mm.
CYA 25 °C, 7 d: Colonies deep, plane, radially sulcate; margins entire; mycelium white; texture velutinous; sporulation moderately dense; conidia en masse dark brown; soluble pigments absent; exudates absent; sclerotia yellow, abundant; reverse yellow brown.
CYA 37 °C, 7 d: Colonies deep, protuberant, radially sulcate; margins narrow, entire; mycelium white; texture velutinous; sporulation dense; conidia en masse dark brown; soluble pigments absent; exudates tiny; reverse yellow brown to greyish black.
MEA 25 °C, 7 d: Colonies plane; margins moderately wide, entire; mycelium white; texture velutinous; sporulation dense; conidia en masse blackish brown; soluble pigments absent; exudates absent; sclerotia yellow, abundant; reverse yellow brown.
YES 25 °C, 7 d: Colonies deep, radially sulcate; margins entire; mycelium white; texture velutinous; sporulation very dense; conidia en masse purplish brown; soluble pigments absent; exudates absent; sclerotia yellow or white; reverse yellow brown.
PDA 25 °C, 7 d: Colonies plain; margins narrow, entire; mycelium white; texture velutinous; sporulation dense; conidia en masse dark brown; soluble pigments absent; exudates absent; sclerotia yellow; reverse white.
Conidial heads radiate; stipes 400–975 × 12–21.5 µm, not septate, walls thick, smooth, hyaline, brownish or black; vesicles 62–80 × 60.5–77.5 µm, globose or subglobose; uniseriate; phialides 6.5–8.5 × 3.5–5.5 µm, flask-shaped and cover the entire surface of the vesicle; conidia 4.5–5.0 × 4.0–5.0 µm, subglobose, echinulate, light brown to dark brown when mature.
Aspergillus xishuangbannaensis is molecularly and morphologically differentiated from its closely related sisters: A. japonicus, A. uvarum, and A. indologenus. For the BenA gene, it differs from A. japonicus by 13 bp (97.27% sequence identity), from A. uvarum by 16 bp (96.26%), and from A. indologenus by 14 bp (97.06%); for the CaM region, it differs from A. japonicus by 20 bp (95.97%), from A. uvarum by 15 bp (96.98%), and from A. indologenus by 17 bp (96.72%); and for the RPB2 fragment, it differs from A. japonicus by five bp (99.50%), from A. uvarum by 19 bp (98.19%), and from A. indologenus by seven bp (99.33%). Although species of this series are similar in gross morphology, the new species can be easily separated from its sisters by much larger vesicles (Table
In our previous study, four new species of Aspergillus were described from the Xisha Islands in the South China Sea (
In contrast, the two new species discovered in this study are both from terrestrial ecosystems, including a cultural heritage site and a nature reserve. This suggests that terrestrial ecosystems also should not be overlooked in biodiversity investigations.
The Xiangtangshan Caves, located in the southern part of Hebei Province in North China, are a famous cultural treasure containing 16 caves adorned with over 4,000 Buddhist sculptures dating back more than 1,400 years. The new species A. hebeiensis was isolated from a soil sample collected in this area. Chinese Buddhist temples have been shown to play an important role in preserving regional biodiversity (
Caves are another biodiversity hotspot, and several Aspergillus species were originally reported from them. Aspergillus alvaroi was isolated from sediment in a Brazilian cave, A. guanovespertilionum from hematophagous bat guano (
The tropical seasonal rain forest in Xishuangbanna is one of the most species-rich forest ecosystems in China. This area is also one of the biodiversity hotspots in the world. Xishuangbanna National Nature Reserve is one of China’s first nature reserves, established in 1958. It consists of five geographically disconnected sub-reserves: Mangao Reserve, Mengla Reserve, Menglun Reserve, Mengyang Reserve, and Shangyong Reserve. Xishuangbanna Tropical Botanical Garden, located in Menglun Town and covering 1,125 hectares, is home to more than 14,000 plant species, including rare orchids and ancient cycads. Many fungal species were first described from Xishuangbanna, e.g., Chloridium xishuangbannaense W.P. Wu & Y.Z. Diao (
The authors thank Dr. Zhao-Qing Zeng and Mr. Xiao Mou of the same institute for providing the strain of A. xishuangbannaensis.
The authors have declared that no competing interests exist.
No ethical statement was reported.
No use of AI was reported.
This project was supported by the National Natural Science Foundation of China (32270008).
Conceptualization: XCW. Data curation: LYP, WYZ, XCW. Formal analysis: LYP, XCW. Funding acquisition: XCW, WYZ. Investigation: XCW. Methodology: XCW. Project administration: WYZ, XCW. Resources: WYZ, XCW. Software: XCW. Supervision: XCW, WYZ. Validation: WYZ, XCW. Visualization: LYP, XCW. Writing - original draft: XCW. Writing - review and editing: XCW, WYZ.
Lu-Yao Peng https://orcid.org/0009-0004-9179-4826
Wen-Ying Zhuang https://orcid.org/0000-0002-1162-9678
Xin-Cun Wang https://orcid.org/0000-0003-1780-7735
All of the data that support the findings of this study are available in the main text or Supplementary Information.
Мaximum likelihood phylogenies
Data type: zip