Research Article |
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Corresponding author: Qin-ying Feng ( 57105762@qq.com ) Academic editor: Huzefa Raja
© 2025 Wang-ming Zhang, Xiao-yu Song, Wan-qing Xie, Xin-zhong Zhou, Juan Lu, Qin-ying Feng.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Zhang W, Song X, Xie W, Zhou X, Lu J, Feng Q (2025) Morphological and multi-gene phylogenetic analyses reveal Nigrellomyces gen. nov. and one new species in Pleurotheciaceae from China. MycoKeys 122: 277-292. https://doi.org/10.3897/mycokeys.122.164540
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Nigrellomyces is introduced herein as a new genus to accommodate a novel asexual ascomycete, Nigrellomyces aquaticus, isolated from submerged decaying wood in freshwater habitats in Guizhou Province, China. Phylogenetic analyses based on a combined dataset of ITS, LSU, SSU, and rpb2 sequence data robustly place Nigrellomyces within the family Pleurotheciaceae (Pleurotheciales, Savoryellomycetidae), with strong statistical support. The genus is currently known only from its asexual morph, which is characterized by macronematous, mononematous, erect, unbranched, septate conidiophores; polyblastic, integrated, terminal or intercalary, sympodial proliferations; denticulate conidiogenous cells with swollen apices; and acrogenous, subglobose to globose, ovoid to obovoid, or ellipsoidal, aseptate, guttulate conidia. Morphological comparisons reveal that Nigrellomyces displays a cordana-like conidiogenesis that is distinct from other genera in Pleurotheciaceae, which typically exhibit acrodictys-, helicoön-, monodictys-, or dactylaria-like asexual morphs. This study provides a comprehensive morphological description, illustrations, and comparative interpretation of the new taxon. An updated phylogenetic backbone tree of Pleurotheciaceae is also presented, improving resolution of intergeneric relationships within the family. The discovery of N. aquaticus not only expands the taxonomic framework of Pleurotheciaceae but also contributes to a deeper understanding of the species richness, ecological roles, and biogeographic distribution of lignicolous freshwater fungi in Southwest China, particularly in the underexplored region of Guizhou Province.
Asexual morph, lignicolous freshwater fungi, phylogeny, Sordariomycetes, taxonomy
Lignicolous freshwater fungi are a specialized group of fungi that colonize submerged or partially submerged woody substrates across a wide range of freshwater habitats, including streams, rivers, lakes, and reservoirs (
In recent decades, Asia has emerged as a global hotspot for lignicolous freshwater fungal research, with numerous studies focusing on the diversity and taxonomy of these fungi (
The family Pleurotheciaceae was established by
In the latest update of “The 2024 Outline of Fungi and Fungus-like Taxa” compiled by
Despite “The 2024 Outline of Fungi and Fungus-like Taxa” listing this genus under Savoryellaceae (Savoryellales), current phylogenetic evidence clearly indicates that Rhexoacrodictys is best placed in Pleurotheciaceae (Pleurotheciales), and its classification within this family is now widely accepted (
During a recent investigation of lignicolous freshwater fungi in Guizhou Province, China, a previously undescribed cordana-like species was isolated. Phylogenetic analyses based on a combined dataset of ITS, LSU, SSU, and rpb2 gene regions revealed that the new collection formed a well-supported and distinct clade within the family Pleurotheciaceae. Based on a comprehensive assessment integrating detailed morphological observations and multi-locus phylogenetic evidence, we introduce a new genus to accommodate this unique taxon. This study provides a thorough taxonomic treatment of the new taxa, including detailed morphological descriptions, high-quality illustrations, and comparative analyses with closely related taxa. In addition, an updated phylogenetic backbone tree of Pleurotheciaceae is presented, offering insights into the relationships among genera within the family. Our findings contribute not only to the taxonomic richness of lignicolous freshwater fungi in Guizhou Province but also enhance our broader understanding of fungal diversity associated with freshwater habitats in southwest China.
Lignicolous substrates (decaying wood) were collected from a stream in Baiyun District, Guiyang City, Guizhou Province, China. Samples were taken to the laboratory in plastic bags and labeled with collection details, including locality, habitat, and date (
Single-spore isolation was performed following the method described by
Fresh fungal mycelia grown on PDA were scraped using sterilized scalpels. Genomic DNA was extracted using the Biospin Fungus Genomic DNA Extraction Kit (BioFlux, China), following the manufacturer’s protocol. The primer pairs ITS5/ITS4 (
BioEdit v. 7.0.5.3 (
Taxa used in this study, along with their corresponding GenBank accession numbers.
| Taxon | Strain/Specimens | GenBank accession numbers | |||
|---|---|---|---|---|---|
| ITS | LSU | SSU | rpb2 | ||
| Adelosphaeria catenata | CBS 138679T | KT278721 | KT278707 | KT278692 | KT278743 |
| Anapleurothecium botulisporum | FMR 11490T | KY853423 | KY853483 | – | – |
| Canalisporium exiguum | SS 00809 | GQ390296 | GQ390281 | GQ390266 | HQ446436 |
| Canalisporium grenadoideum | SS 03615 | – | GQ390267 | GQ390252 | HQ446420 |
| Canalisporium pulchrum | SS 03982 | GQ390292 | GQ390277 | GQ390262 | HQ446432 |
| Coleodictyospora muriformis | MFLUCC 18-1243T | MW981642 | MW981648 | MW981704 | – |
| Coleodictyospora muriformis | MFLUCC 18-1279 | MW981643 | MW981649 | MW981705 | – |
| Conioscypha lignicola | CBS 335.93 | – | AY484513 | JQ437439 | JQ429260 |
| Conioscypha minutispora | CBS 137253 | – | MH878131 | – | – |
| Dematipyriforma aquilaria | CGMCC 3.17268T | KJ138621 | KJ138623 | KJ138622 | – |
| Dematipyriforma muriformis | MFLU 21-0146T | OM654773 | OM654770 | – | – |
| Dematipyriforma nigrospora | MFLUCC 21-0096T | MZ538524 | MZ538558 | – | – |
| Dematipyriforma nigrospora | MFLUCC 21-0097 | MZ538525 | MZ538559 | MZ538574 | MZ567113 |
| Helicoascotaiwania farinosa | DAOM 241947 | JQ429145 | JQ429230 | – | – |
| Helicoascotaiwania lacustris | CBS 145963T | MN699399 | MN699430 | MN699382 | MN704304 |
| Helicoascotaiwania lacustris | CBS 146144 | MN699401 | MN699432 | MN699384 | MN704306 |
| Melanotrigonum ovale | CBS 138743T | KT278724 | KT278709 | KT278696 | KT278745 |
| Melanotrigonum ovale | CBS 138742 | KT278723 | KT278708 | KT278695 | KT278744 |
| Monotosporella setosa | HKUCC 3713 | – | AF132334 | – | – |
| Neoascotaiwania fusiformis | MFLU 15-1156T | MG388215 | NG_057114 | – | – |
| Neoascotaiwania fusiformis | MFLUCC 15-0625 | – | KX550894 | KX550898 | – |
| Neomonodictys aquatica | KUNCC 21-10708T | MZ686200 | OK245417 | – | – |
| Neomonodictys muriformis | MFLUCC 16-1136T | MN644509 | MN644485 | – | – |
| Nigrellomyces aquaticus | GZCC 25-0630T | PV871229 | PV871235 | – | PV872880 |
| Nigrellomyces aquaticus | GZCC 25-0631 | PV871230 | PV871236 | – | PV872881 |
| Obliquifusoideum guttulatum | MFLUCC 18-1233T | MW981645 | MW981650 | MW981706 | – |
| Obliquifusoideum triseptatum | CGMCC 3.27014T | PP445243 | PP049503 | PP049521 | PP068779 |
| Phaeoisaria motuoensis | KUNCC 10410T | OP626333 | OQ947034 | OQ947036 | – |
| Phaeoisaria motuoensis | KUNCC 10450 | OQ947032 | OQ947035 | OQ947037 | – |
| Phaeoisaria obovata | CGMCC 3.27015T | PP049488 | PP049504 | PP049522 | PP068788 |
| Phaeoisaria obovata | KUNCC 23-15598 | PP049489 | PP049505 | PP049523 | PP068784 |
| Phaeoisaria sedimenticola | CGMCC3.14949T | JQ074237 | JQ031561 | – | – |
| Phaeoisaria sedimenticola | KUNCC 23-14648 | PP049490 | PP049506 | PP049524 | PP068783 |
| Phaeoisaria synnematica | NFCCI 4479T | MK391494 | MK391492 | – | – |
| Phaeoisaria synnematica | KUNCC 23-16619 | PP049493 | PP049509 | PP049527 | PP068787 |
| Phragmocephala stemphylioides | KAS 4277 | KT278730 | KT278717 | – | – |
| Pleurotheciella aquatica | MFLUCC 17-0464T | MF399236 | MF399253 | MF399220 | MF401405 |
| Pleurotheciella brachyspora | CGMCC 3.25435T | OR589321 | OR600969 | PP049532 | PP068773 |
| Pleurotheciella fusiformis | MFLUCC 17-0113T | MF399233 | MF399250 | MF399218 | MF401403 |
| Pleurotheciella fusiformis | MFLUCC 17-0115 | MF399232 | MF399249 | MF399217 | MF401402 |
| Pleurotheciella guttulata | KUMCC 15-0442 | MF399239 | MF399256 | MF399222 | MF401408 |
| Pleurotheciella guttulata | KUMCC 15-0296T | MF399240 | MF399257 | MF399223 | MF401409 |
| Pleurotheciella longidenticulata | CGMCC 3.27018T | PP049496 | PP049513 | PP049531 | PP068776 |
| Pleurothecium aquaticum | MFLUCC 17-1331T | MF399245 | MF399263 | – | – |
| Pleurothecium aquaticum | MFLUCC 21-0148 | OM654775 | OM654772 | OM654807 | – |
| Pleurothecium aquisubtropicum | GZCC 21-0670T | OM339436 | OM339433 | – | – |
| Pleurothecium pisiformis | KUNCC 24-19085T | PV264837 | PV264846 | PV335238 | – |
| Pleurothecium pulneyense | MFLUCC 16-1293 | – | MF399262 | MF399228 | MF401414 |
| Pleurothecium semifecundum | CBS 131482 | JQ429158 | JQ429239 | JQ429253 | – |
| Pleurothecium semifecundum | CBS 131271T | JQ429159 | JQ429240 | JQ429254 | JQ429270 |
| Pseudosaprodesmium cocois | MFLU 23-0225T | OR438401 | OR438864 | OR458363 | – |
| Pseudosaprodesmium cocois | GZAAS 23-0588 | OR438402 | OR438865 | OR458364 | – |
| Rhexoacrodictys fimicola | HMAS 43690 | KU999957 | KX033550 | KX033519 | – |
| Rhexoacrodictys fimicola | HMAS 47737 | KU999960 | KX033553 | KX033522 | – |
| Rhexoacrodictys fimicola | MFLUCC 18-0340 | OM654774 | OM654771 | OM654806 | – |
| Rhexoacrodictys melanospora | KUNCC 22-12406T | OP168085 | OP168087 | OP168088 | OP208807 |
| Rhexoacrodictys melanospora | KUNCC 22-12411 | OP168093 | OP168101 | OP168099 | OP208808 |
| Saprodesmium dematiosporium | KUMCC 18-0059T | MW981646 | MW981647 | MW981707 | – |
| Sterigmatobotrys macrocarpa | PRM 915682 | JQ429153 | GU017317 | JQ429255 | – |
| Sterigmatobotrys rudis | DAOM 229838 | JQ429152 | JQ429241 | JQ429256 | JQ429272 |
Maximum likelihood (ML) analysis was conducted using the IQ-TREE web server (http://iqtree.cibiv.univie.ac.at/) based on Bayesian Information Criteria (BIC) (
Phylogenetic trees were visualized using FigTree v. 1.4.4 and further edited in PowerPoint. The photo plate was prepared using Adobe Photoshop CS6 software (Adobe Systems, USA).
The single-locus and multi-locus phylogenetic analyses (LSU, ITS, SSU, and rpb2) were implemented to elucidate the phylogenetic position of the two new strains. The concatenated sequence matrix comprised 3,102 characters (LSU: 1–826, ITS: 827–1,371, SSU: 1,372–2,143, and rpb2: 2,144–3,102) across 60 taxa. Maximum likelihood (ML) and Bayesian inference (BI) analyses were conducted on the concatenated datasets of LSU, ITS, SSU, and rpb2, both yielding similar tree topologies. Fig.
Phylogenetic tree generated from ML analysis based on the combined LSU, ITS, SSU, and rpb2 sequence data. Bootstrap support values for maximum likelihood greater than 75% (ML left) and Bayesian posterior probabilities ≥ 0.95 (BYPP right) are shown at the nodes. The tree was rooted with Conioscypha lignicola (CBS 335.93) and C. minutispora (CBS 137253). Ex-type strains are denoted with “T,” and newly isolated strains are in bold red fonts.
Based on the multi-gene phylogenetic tree (Fig.
“Nigrellomyces” refers to the small, dark-colored conidia characteristic of this genus.
Saprobic on decaying wood submerged in a freshwater stream. Asexual morph: Colonies superficial, effuse, hairy, brown to black, scattered, with glistening conidial masses at apex. Mycelium partly superficial, partly immersed, consisting of branched, septate, smooth, smooth-walled, hyaline to pale brown hyphae. Conidiophores macronematous, mononematous, solitary, erect, unbranched, septate, straight or flexuous, cylindrical, slightly constricted at septa, dark brown, becoming pale brown to brown towards the apex. Conidiogenous cells polyblastic, integrated, terminal or intercalary sympodial proliferations, sometimes denticles, cylindrical, reniform, swollen at the top, pale brown to brown. Conidia acrogenous, subglobose to globose, ovoid to obovoid, or ellipsoidal, aseptate, occasionally forming chains in water, guttulate, subhyaline to brown or black, smooth-walled. Sexual morph: Undetermined.
Nigrellomyces aquaticus W.M. Zhang & Q.Y. Feng
Morphologically, Nigrellomyces can be readily distinguished from other genera in Pleurotheciaceae by its polyblastic, reniform conidiogenous cells with curved apices and subglobose to globose, ovoid to obovoid, or ellipsoidal, aseptate conidia that occasionally form chains in water. Phylogenetically, Nigrellomyces forms a distinct clade within Pleurotheciaceae, supporting its recognition as a new genus. Herein, we establish the genus Nigrellomyces to accommodate a new species, N. aquaticus, which is designated as the type species based on both molecular evidence and its distinctive conidial morphology.
“aquaticus’’ refers to the aquatic habitat of this fungus.
Nigrellomyces aquaticus (GZAAS 25-0660, holotype). a, b. Colonies on the host surface; c–f. Conidiophores, conidiogenous cells, and conidia; g–h. Conidiogenous cells; i-j. Conidiogenous cells and conidia; k. Germinated conidium; l–o. Conidia; p, q. Colonies on PDA from above and below after 41 days of incubation at room temperature. Scale bars: 60 μm (d–f); 50 μm (c); 20 μm (g–j); 10 μm (k–o).
GZAAS 25-0660
Saprobic on decaying wood submerged in a freshwater stream. Asexual morph: Colonies superficial, effuse, hairy, brown to black, scattered, with glistening conidial masses at apex. Mycelium partly superficial, partly immersed, consisting of branched, septate, smooth, smooth-walled, hyaline to pale brown hyphae. Conidiophores macronematous, mononematous, solitary, erect, unbranched, multi-septate, straight, or flexuous, cylindrical, slightly constricted at septa, 146–364 × 4.5–8 μm x ̄ = 224 × 5.8 μm, n = 25), dark brown, becoming pale brown to brown towards the apex. Conidiogenous cells polyblastic, integrated, terminal or intercalary, sympodial proliferations, sometimes denticles, cylindrical, reniform, curved, and swollen at the apex, 8.5–28 × 4–6 μm x ̄ = 20 × 5.2 μm, n = 25), pale brown to brown. Conidia acrogenous, subglobose to globose, ovoid to obovoid, or ellipsoidal, aseptate, occasionally forming chains in water, guttulate, 7.5–12.5 × 5–8.5 μm x ̄ = 8.9 × 7 μm, n = 25), light brown or black, smooth-walled, sometimes have small apiculus at the base. Sexual morph: Undetermined.
Conidia germinate on PDA within 17 hours, producing germ tubes from the conidial body. Colonies on PDA are irregular with a flat surface and undulate margin, reaching 38 cm in diameter after 41 days at room temperature (approximately 25 °C), and are brown to dark brown on both the surface and reverse sides.
China • Guizhou Province, Guiyang City, Baiyun District, Changpo Ling National Forest Park, on rotting wood in a freshwater habitat, 15 March 2025, Wang-Ming Zhang, QX13 (GZAAS 25-0660, holotype), ex-type living cultures GZCC 25-0630; • Ibid., QX13.1 (GZAAS 25-0661, paratype), living culture GZCC 25-0631.
In our phylogenetic tree (Fig.
The newly introduced genus Nigrellomyces shares morphological similarities with Cordana, including brown, septate conidiophores; polyblastic, swollen conidiogenous cells; and brown, obovoid to ellipsoidal conidia (
The authors have declared that no competing interests exist.
No ethical statement was reported.
No use of AI was reported.
This work was supported by the Doctoral Research Fund of Beijing Jishuitan Hospital Guizhou Hospital (grant number JGYBS[2025]01) and the Medical Research Union Fund for High-quality Health Development of Guizhou Province (grant number 2024GZYXKYJJXM0151).
Writing - original draft: XS, WZ. Writing - review and editing: QF, XZ, WX, JL.
All of the data that support the findings of this study are available in the main text.