Research Article |
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Corresponding author: Qirui Li ( lqrnd2008@l63.com ) Academic editor: Xinlei Fan
© 2025 Qinfang Zhang, Yulin Ren, Kamran Habib, Changtao Lu, Lili Liu, Jichuan Kang, Xiangchun Shen, Chuangen Lin, Nalin N. Wijayawardene, Hind A. Al-Shwaiman, Qirui Li, Abdallah M. Elgorban.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Zhang Q, Ren Y, Habib K, Lu C, Liu L, Kang J, Shen X, Lin C, Wijayawardene NN, Al-Shwaiman HA, Li Q, Elgorban AM (2025) Two new species and a new host record of Hyphomycetes associated with decaying wood in Yunnan Province, China. MycoKeys 121: 311-328. https://doi.org/10.3897/mycokeys.121.162535
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In recent years, there has been certain progress in the research on fungal diversity in Yunnan Province, China, particularly in aquatic habitats. This study introduces two new species, Ellisembia yuxiense and Sporidesmium ailaoshanense, as well as a new host record of Sporidesmium tropicale on Pinus yunnanensis from freshwater habitats in Yunnan Province. All taxa were identified by integrating morphological traits with phylogenetic analysis of combined LSU, ITS, and rpb2 DNA sequences. Comprehensive morpho-anatomical descriptions and detailed illustrations are provided to elucidate the characteristics of each taxon.
2 new taxa, asexual morph, phylogeny, Sporidesmiales, taxonomy
The family Sporidesmiaceae was initially erected by
However, given the lack of phylogenetic support for the taxonomic significance of euseptate and distoseptate conidia among sporidesmium-like species,
Our recent studies on aquatic fungi from Southwestern China have revealed several novel taxa and new records, including two novel species (Memnoniella chrysanthemi and Craspedodidymum hunanense) and a new record (Aquadictyospora clematidis) (
Between August and October 2024, researchers collected specimens of decaying branches and logs submerged in streams and lakes from Ailaoshan National Nature Reserve and Wumengshan National Nature Reserve in Yunnan Province, China. These specimens were packed in sealed plastic bags, and collection in formation was recorded (
Macroscopic characteristics were examined under an Olympus SZ61 stereomicroscope (Japan) and photographed with a Canon 700D digital camera (Canon, Tokyo, Japan). Samples were mounted in water for microscopic observation. Quantitative measurements focused on internal structures, including the diameter, height, color, and shape of the conidiomata. The length and width of conidiophores and conidia were precisely measured, with width consistently recorded at the broadest point to ensure accuracy and comparability. The Tarosoft® Image Frame Work (v0.9.7) program and Adobe Photoshop CS6 software (Adobe Systems, USA) were used for measuring and processing images. Single-spore isolation was performed following the method described by
Colonies were cultivated on potato dextrose agar (PDA) plates for 2 to 4 weeks until the hyphae fully colonized the medium or growth ceased. Fresh mycelia were then gently scraped using a sterile scalpel for DNA extraction. Total genomic DNA was isolated using the BIOMIGA Fungal Genomic DNA Extraction Kit (TAKARA RR047A, China), following the manufacturer’s instructions. PCR amplification targeted three regions: the internal transcribed spacer (ITS), the large subunit rDNA (LSU), and a partial fragment of the second-largest subunit of RNA polymerase II (rpb2). Primer pairs used were ITS5/ITS4 for ITS (
The reference sequences retrieved from open databases originated from recently published data and BLASTn results of closely matching sequences. Sequences were aligned using the MAFFT v.7.110 online program (
Taxa and corresponding GenBank accession numbers of sequences used in the phylogenetic analysis.
| Name | Strain | Type | GenBank accession numbers | References | ||
|---|---|---|---|---|---|---|
| ITS | LSU | rpb2 | ||||
| Ellisembia bambusicola | HKUCC 3578 | – | – | DQ408562 | – |
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| Ellisembia calyptrata | HKUCC 10821 | T | – | DQ408564 | DQ435085 |
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| Ellisembia cryptomeriae | UESTCC 23.0227 | T | OR887405 | OR887115 | PP076811 |
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| Ellisembia coronata | CCF 6699 | – | OR886656 | OR886656 | – |
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| Ellisembia cangshanensis | MFLUCC 15-0420 | – | – | KU376273 | – |
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| Ellisembia minigelatinosa | NN 47497 | – | – | DQ408567 | – |
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| Ellisembia pseudobambusae | CCF 6709 | – | OR886657 | OR886657 | PP349741 |
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| Ellisembia sp. | HKUCC 10558 | – | – | DQ408565 | DQ435088 |
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| Ellisembia melaleucae | CPC 32707 | T | MH327817 | NG_064550 | – |
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| Ellisembia melaleucae | CPC 32936 | – | MH327818 | MH327854 | – |
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| Ellisembia spiraeae | CBS 148298 | T | NR_175218 | NG_081327 | OK651164 |
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| Ellisembia spiraeae | CPC 39766 | – | OK664716 | OK663755 | – |
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| Ellisembia yuxiensis | GMB5104 | T | PV779542 | PV779549 | PV78284 | This study |
| Ellisembia yuxiensis | GMB5108 | – | PV779546 | PV779552 | PV782985 | This study |
| Sporidesmium ailaoshanensis | GMB5103 | T | PV779542 | PV779548 | PV782982 | This study |
| Sporidesmium ailaoshanensis | GMB5107 | – | PV779545 | PV779551 | PV782983 | This study |
| Sporidesmium appendiculatum | MFLU 18-0981 | T | MW286500 | MW287774 | – |
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| Sporidesmium aturbinatum | DLUCC 1417 | – | MZ420743 | MZ420758 | MZ442697 |
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| Sporidesmium chiangmaiense | MFLUCC 18-0999 | – | MW286497 | MW287771 | – |
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| Sporidesmium dulongense | MFLUCC 17-0116 | T | MH795812 | MH795817 | MH801190 |
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| Sporidesmium fluminicola | MFLUCC 15-0346 | – | – | KU376271 | – |
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| Sporidesmium lageniforme | MFLU 18-1594 | T | MK828640 | MK849782 | MN124533 |
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| Sporidesmium lignicola | DLUCC 1376 | – | – | MK849783 | – |
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| Sporidesmium lignicola | KUMCC 15-0266 | T | – | MK849784 | – |
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| Sporidesmium luminicola | MFLUCC 15-0346 | – | – | KU376271 | – |
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| Sporidesmium parvum | HKUCC 10836 | – | – | DQ408558 | – |
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| Sporidesmium pyriformatum | MFLUCC 15-0620 | T | KX710146 | KX710141 | MF135649 |
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| Sporidesmium pyriformatum | MFLUCC 15-0627 | – | KX710148 | KX710143 | MF135650 |
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| Sporidesmium submersum | MFLUCC 15-0421 | T | – | KU376272 | – |
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| Sporidesmium tetracoilum | CBS 126412 | – | MH864106 | MH875566 | – |
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| Sporidesmium tetracoilum | PRC 4681 | – | OU413153 | OU413153 | – |
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| Sporidesmium thailandense | MFLUCC 15-0964 | T | – | MF374370 | MF370955 |
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| Sporidesmium thailandense | MFLUCC 15-0617 | – | – | MF077561 | – |
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| Sporidesmium tropicale | MFLU 17–0850 | – | MF077551 | MF077562 | MF135646 |
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| Sporidesmium tropicale | DLUCC:1689 | – | MZ420745 | MZ420760 | MZ442698 |
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| Sporidesmium tropicale | MFLUCC 17-0344 | – | OL780513 | OL782088 | – |
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| Sporidesmium tropicale | GMB5105 | – | PV779544 | PV779550 | PV782986 | This study |
| Sporidesmium tropicale | GMB5109 | – | PV779547 | PV779553 | PV782987 | This study |
| Sporoschisma hemipsilum | CBS 414.61 | – | MH858104 | MH869677 | – |
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| Sporoschisma hemipsilum | KUMCC 15-0227 | – | KX455866 | KX455859 | – |
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| Sporoschisma hemipsilum | MFLUCC 17-1712 | – | MK828616 | MK835816 | – |
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| Sporoschisma juvenile | MFLUCC 18-1348 | – | MK828619 | MK835819 | – |
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| Tracylla aristata | CBS 141404 | – | OL654129 | OL654186 | – |
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| Tracylla aristata | CPC 25500 | – | KX306770 | KX306795 | – |
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The concatenated ITS–LSU–rpb2 alignment of the Sporidesmiaceae dataset consisted of 46 taxa, including the outgroups. Tracylla aristata CBS-141404 and T. aristata CPC-25500 (
RAxML tree based on a combined ITS, LSU, and rpb2 gene sequences data set. Bootstrap support values for maximum likelihood (ML) ≥ 75% and Bayesian posterior probabilities (BPP) ≥ 0.95 are displayed above or below the respective branches (ML/BI). New species and new host species are highlighted in red font, while type materials are displayed in bold black font.
The specific epithet refers to the location where the holotype specimen was collected, Yuxi City.
China • Yunnan Province, Yuxi City, Ailaoshan National Nature Reserve (24°5'7.01"N, 101°31'30.44"E), altitude: 1169 m, on moist decayed branch, 15 September 2024, Qinfang Zhang, 2024ALS177-1 (GMB5104, holotype; GMBC5104, ex-type);
Saprobic on decaying twigs of an unknown branch. Sexual morph: undetermined. Asexual morph: Mycelium superficial, septate, light brown to brown, numerous, scattered, single or in groups. Conidiophores 81–158 × 4–6 µm (av. = 110.3 × 5.1 µm, n = 30), macronematous, mononematous, solitary or caespitose, erect, verruculose, straight or slightly curved, becoming slightly narrower towards the apex, 7–12-septate, smooth-walled, unbranched. Conidiogenous cells 3–6 × 2–4 µm (av. = 4.7 × 3.8 µm, n = 30), monoblastic, integrated, pale brown, terminal, cylindrical. Conidia 24–57 µm (av. = 40.4, n = 30) long, 6–9 µm (av. = 8.8 µm, n = 30) wide at the broadest part, tapering to 2–4 μm (av. = 3.4 μm, n = 30) wide at apex, 2–5 μm (av. = 3.4 μm, n = 30) wide at base, solitary, acrogenous, smooth, obclavate, truncate at the base, gray to light brown, without a mucilaginous cap, 5–9-distoseptate, and also 3–5 euseptate.
Conidia germinate on water agar within 12 hours. At 24 °C, colonies growing on PDA reach a diameter of 10–15 mm after 7 weeks. Colonies convex, surface rough, moist, uneven, from above grayish-white, reverse dark brown to black. No pigmentation was produced in the culture medium.
Ellisembia yuxiense (GMB5104, Holotype) A. Specimen; B–D. Conidiophores and conidia on natural substratum; E. Germinating conidium; F, G. Conidiophores and conidia; H. Conidiogenous cells and conidia; I, J. Conidia; K, L. Surface and reverse view of culture on PDA. Scale bars: 1 mm (B); 0.5 mm (C); 0.1 mm (D); 10 μm (E–J).
China • Yunnan Province, Yuxi City, Ailaoshan National Nature Reserve (28°19'21.77"N, 104°00'19.21"E), altitude: 1419 m, on moist decayed branch, 15 September 2024, Qinfang Zhang, 2024ALS175 (GMB5108; GMBC5108).
Phylogenetically, Ellisembia yuxiense formed a well-supported sister branch to E. calyptrata (HKUCC-10821) (Fig.
| Names | Strain | Conidiophores | Conidiogenous cells | Conidia | Reference |
|---|---|---|---|---|---|
| Ellisembia calyptrata | HKUCC 10821 | verruculose. Brown to dark brown, 30–50 × 6.0–7.0 μm. | monoblastic, integrated, pale brown, terminal, cylindrical. | obclavate, truncate at the base, tapering to the apex, 6–17-septate, pale brown to dark brown, 60–90 × 9.0–12.0 μm. |
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| E. coronata | CCF 6699 | (1–)2–5(–6)-septate, 0–2 ampulliform, lageniform or subcylindrical percurrent extensions, Brown to dark reddish brown, 18–66 × 5–7 μm. | monoblastic, integrated, pale brown, terminal, cylindrical | narrowly obclavate, less often subcylindrical or subfusiform, sometimes short rostrate, pale brown, smooth, 7–14-distoseptat, Brown to dark brown, (40–)52–89(–101) × 8–11 µm. |
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| E. cryptomeriae | UESTCC 23 0227 | 4–12-septate, verruculose. Brown to dark brown, 45–140 × 5–10 μm. | monoblastic, integrated, pale brown, terminal, cylindrical, 4–15 × 3–5 μm. | obclavate, truncate at the base, tapering to the apex, 6–17-septate, pale brown to dark brown, 20–85 × 7–14 μm. |
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| E. melaleucae | CPC 32707 | 1-2-septate, erect, subcylindrical, dark brown, 12–30 × 4–6 μm. | terminal, medium brown, smooth, subcylindrical, holoblastic, 5–20 × 4–5 μm. | medium brown, smooth, obclavate, straight to flexuous, apexobtuse, base obconically truncate, 5-21-disto-septate, (45–)80–130(–170) × (8–)9–10(–11) μm. |
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| E. spiraeae | CBS148298 | 1-4-septate, erect, dark brown, subcylindrical, unbranched, 15–40 × 5–7 μm. | terminal, integrated, subcylindrical, blastic, medium brown, smooth-walled, 10–20 × 5-–6 μm. | solitary, obclavate, straight to flexuous, apex subobtuse, base obconically truncate, (4-)6–10-distoseptate, (45–)70–85(–100) × (8–)9(–10) μm. |
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| E. yuxiense | GMB5104, GMB5108 | 7–12-septate, verruculose. Brown to dark brown, 81–158 × 4–6 µm. | monoblastic, integrated, pale brown, terminal, cylindrical. 3–6 × 2–4 µm. | obclavate, truncate at the base, tapering to the apex, 5–9-septate, pale brown to dark brown. 24–57 × 6–9 µm. | This study |
Furthermore, only the LSU and rpb2 sequence data are accessible for E. calyptrata. A comparison of sequence data of the LSU and rpb2 between E. yuxiense (GMB5104) and E. calyptrata (HKUCC-10821) shows 98.57% sequence identity in LSU and 88.72% sequence identity in rpb2.
The specific epithet refers to the location where the holotype specimen was collected, Ailaoshan National Nature Reserve.
China • Yunnan Province, Ailaoshan National Nature Reserve (24°5'7.01"N, 101°31'30.44"E), altitude: 1169 m, on dry rotten wood, 15 September 2024, Qinfang Zhang, 2024ALS74 (GMB5103, holotype; GMBC5103, ex-type);
Saprobic on decaying twigs of an unknown wood. Sexual morph: undetermined. Asexual morph: Colonies on the substratum superficial, effuse, scattered, hairy, black. Mycelium immersed, composed of branched, septate, smooth, pale brown to brown hyphae. Conidiophores 110–184 × 4–7 µm (av. = 135 × 6.2 µm, n = 30), macronematous, mononematous, unbranched, erect, straight or slightly flexuous, smooth, thick-walled, septate, not clear, cylindrical, dark brown, paler towards apex, smooth, and thick-walled. Conidiogenous cells 10–16 × 4–9 µm (av. = 13.2 × 7.1 µm, n = 30), monoblastic, integrated, determinate or sometimes percurrently proliferating, terminal, pale brown, cylindrical. Conidia 42–58 × 13–22 µm (av. = 49.0 × 17.4 µm, n = 30), acrogenous, solitary, dry, pyriform or lageniform, truncate at the base, smooth, dark brown, paler towards the apex, 4–5 µm wide and truncate at the base, thick-walled, 3–5 µm wide at the apex, 6–8-septate, slightly constricted at the septa, Conidial secession schizolytic.
Sporidesmium ailaoshanense (GMB5103, Holotype) A. Specimen; B–D. Conidiophores and conidia on natural substratum; E. Germinating conidium; F–H. Conidiophores and conidia; I. Conidiogenous cell; J, K. Conidia; L, M. Surface and reverse view of culture on PDA. Scale bars: 1 mm (B); 0.25 mm (C, D); 10 μm (E–K).
Conidia germinate on WA within 12 hours. At 25 °C, colonies growing on PDA reach a diameter of 20–30 mm after three weeks. The colonies are convex, with a smooth surface, mycelium present, dry, flat, and wrinkle-free. From above, the center appears white, with a grayish-white edge, while from below, the colony center is dark brown to black. No pigmentation is produced in the culture medium.
China • Yunnan Province, Ailaoshan National Nature Reserve (24°5'4.82"N, 101°31'32.89"E), altitude: 1131 m, on a dry wood branch, 15 September 2024, Qinfang Zhang, 2024ALS131 (GMB5107, GMBC5107).
Phylogenetically, Sporidesmium ailaoshanense is closely related to S. dulongense (MFLUCC-17-0116) (Fig.
Sporidesmium submersum also shares a similar conidial shape and length with S. ailaoshanense, including a short hyaline apex. However, it differs in having much shorter conidiophores (59–72 μm vs. 110–184 μm) and thinner conidia (14–16 μm vs. 13–22 μm) (
Pinus yunnanensis Franch.
Saprobic on submerged decaying branch of Pinus yunnanensis. Sexual morph: undetermined. Asexual morph: Colonies on superficial substratum, scattered, hairy, effuse, and black. Mycelium mostly immersed, composed of septate, branched, pale black, and smooth-walled hyphae. Conidiophores 76–392 × 4–8 µm (av. = 239 × 7.0 µm, n = 30), macronematous, mononematous, unbranched, cylindrical, erect, straight or slightly flexuous, single, 5–17-septate, dark brown, paler towards apex, smooth, and thick-walled. Conidiogenous cells 4–11 × 3–5 µm (av. = 6.1 × 4.0 µm, n = 30), monoblastic, holoblastic, terminal, integrated, cylindrical, and dark-brown. Conidia 65–134 × 12–16 µm (av. = 105 × 14.8 µm, n = 30), acrogenous, solitary, dry, pyriform, rostrate, obclavate, with a long and slender apex, straight or slightly curved, tapering to the apex, 3–5 µm wide and truncate at the base, dark brown, pale brown, 2–5 µm wide at the apex, 11–17-septate, thick-walled, and with the proximal part usually verrucose.
China • Yunnan Province, Wumengshan National Nature Reserve (28°19'29.79"N, 104°00'05.48"E), altitude: 1361 m, on Pinus yunnanensis Franch., decaying wood, 22 July 2024, Qinfang Zhang, 2024WMS80 (GMB5105). China • Yunnan Province, Wumengshan National Nature Reserve (28°19'15.23"N, 104°0'16.31"E), altitude: 1373 m, on dry wood, 22 July 2024, Qinfang Zhang, 2024WMS96 (GMB5109).
In the phylogram (Fig.
The conidiophores in our collection (S. tropicale GMB5105) are longer (76–392 × 4–8 µm) than those reported by
In our phylogenetic analysis (Fig.
Based on the morphological differences between S. tropicale and Sporidesmium species, this study suggests that S. tropicale may be classified as a distinct genus. However, to date, no similar species have been reported. Consequently, the criteria for establishing it as a separate genus have not been met, and the original species name is retained in this study.
In our phylogenetic analysis (Fig.
The discovery of two new fungal species (E. yuxiense and S. ailaoshanense) and a new host record (S. tropicale on Pinus yunnanensis) enhances our understanding of fungal diversity in Yunnan, China. Integrating morphological and molecular data is crucial for accurate classification in Sporidesmiaceae. Phylogenetic analyses support these new taxa and clarify their relationships. Morphological differences align with molecular divergences, highlighting ecological adaptability and evolutionary divergence. The new host record expands S. tropicale’s ecological range, suggesting host-specific adaptations. Further studies are needed to investigate their ecological roles and distribution patterns (
Our study highlights the distinct evolutionary positions of Sporidesmium tropicale in Clade B and Ellisembia species in Clade C within Sporidesmiaceae, supported by high phylogenetic support values. Morphological disparities, particularly in conidial characteristics and conidiogenous cell types, underscore potential taxonomic distinctions.
However, there is currently insufficient evidence to warrant the establishment of new genera. The discovery of new species and a host record enhances our understanding of fungal diversity in Yunnan, emphasizing the need for integrated morphological and molecular approaches in future taxonomic and ecological research.
The authors extend their appreciation to the Ongoing Research Funding Program (ORF-Ctr-2025-6), King Saud University, Riyadh, Saudi Arabia.
The authors have declared that no competing interests exist.
No ethical statement was reported.
No use of AI was reported.
This research was supported by the National Natural Science Foundation of China (NSFC 32170019) and the Guizhou Medical University High-Level Talent Launch Fund Project (2023-058).
Conceptualization: Qinfang Zhang, Qirui Li, and Lili Liu. Collection and morphological examinations: Qinfang Zhang, Changtao Lu, and Yulin Ren. Molecular sequencing and phylogenetic analyses: Qinfang Zhang, Kamran Habib, Lili Liu. Specimen identification: Nalin N. Wijayawardene, Chuangen Lin, and Qirui Li. Original draft preparation: Qinfang Zhang, Qirui Li. Review and editing and supervision: Hind A. Al-Shwaiman, Abdallah M. Elgorban, Chuangen Lin, Xiangchun Shen, Jichan Kang, Nalin N. Wijayawardene, and Qirui Li. All authors have read and agreed to the published version of the manuscript.
Qinfang Zhang https://orcid.org/0009-0003-9408-4988
Yulin Ren https://orcid.org/0009-0003-9063-425X
Kamran Habib https://orcid.org/0000-0003-2572-0306
Jichuan Kang https://orcid.org/0000-0002-6294-5793
Xiangchun Shen https://orcid.org/0000-0002-4333-9106
Chuangen Lin https://orcid.org/0000-0003-2750-8720
Nalin N. Wijayawardene https://orcid.org/0000-0003-0522-5498
Abdallah M. Elgorban https://orcid.org/0000-0003-3664-7853
All specimens are deposited in the herbaria of Guizhou Medical University (GMBH) and the Kunming Institute of Botany, Chinese Academy of Sciences (