Research Article |
Corresponding author: An-Hong Zhu ( anhong.zhu@catas.cn ) Corresponding author: Ying-Da Wu ( wydbjfu@163.com ) Academic editor: Samantha C. Karunarathna
© 2025 Xin Li, Xin Zhang, Yi-Fei Sun, Zhen-Hao Li, An-Hong Zhu, Ying-Da Wu.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Li X, Zhang X, Sun Y-F, Li Z-H, Zhu A-H, Wu Y-D (2025) Morphological and molecular identification for two new wood-inhabiting species of Botryobasidium (Basidiomycota) from China. MycoKeys 116: 73-89. https://doi.org/10.3897/mycokeys.116.143594
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The wood-inhabiting fungi refer to large basidiomycetes that grow on various woody materials and are distributed in various forest ecosystems, some of which have important economic value. In the present study, two new resupinate, adnate, wood-inhabiting fungal taxa, Botryobasidium latihyphum and B. zhejiangensis, are introduced based on morphological and molecular characteristics. A molecular phylogenetic study based on sequence data from the internal transcribed spacers (ITS) and the large subunit (nLSU) regions supported the two new species in the genus Botryobasidium. Maximum likelihood (ML), maximum parsimony (MP), and Bayesian inference (BIBI) were employed to perform phylogenetic analyses of these datasets. The new species B. latihyphum is characterized by its cream hymenial surface when fresh, olivaceous buff when dry, a monomitic hyphal system with clamp connections, the presence of clavate to tubular cystidia, basidia with six sterigmata, and broadly oval basidiospores measuring 7.9–10.2 × 3.2–4.3 μm. Botryobasidium zhejiangensis sp. nov. is characterized by its white to buff-yellow hymenial surface when fresh, cream when dry, a monomitic hyphal system with clamp connections, lacking cystidia, basidia with six sterigmata, and broadly navicular basidiospores measuring 7.9–9.2 × 2.6–3.4 μm. The phylogenetic result inferred from ITS + nLSU sequence data revealed that B. latihyphum is closely related to B. vagum, B. laeve, B. subincanum, and B. incanum, while B. zhejiangensis is closely related to B. leptocystidiatum, B. subcoronatum, B. xizangense, and B. intertextum.
Botryobasidiaceae, new species, phylogeny, taxonomy, wood-rotting fungi
The wood-inhabiting fungi are large basidiomycetes that grow on various woody materials and have a global distribution (
In the earliest classification system, Botryobasidium species were treated in Corticium Pers. based on microscopic morphological characteristics;
Phylogenetically, the genus Botryobasidium is a well-supported monophyletic group closely related to Tulasnella J. Schröt., Clavulina J. Schröt., and Sistotrema Fr., but the former differed from the latter three genera by having wider hyphae and lacking oil droplets in basidia and basidiospores (
So far, 115 species of Botryobasidium have been discovered worldwide (
Fresh fruiting bodies of the fungi were collected from Linzhi of Xizang Autonomous Region and Jinhua of Zhejiang Province, China. After the important collection information was noted (
The following abbreviations were used in the descriptions:
KOH = 5% potassium hydroxide,
IKI = Melzer’s reagent,
IKI– = neither amyloid nor dextrinoid,
CB = Cotton Blue,
CB+ = cyanophilous,
CB– = acyanophilous,
L = mean spore length (arithmetic average of all spores),
W = mean basidiospore width (arithmetic average of all spores),
Q = variation in the L/W ratios between the specimens studied,
n (a/b) = number of basidiospores (a) measured from the given number of specimens (b). In presenting basidiospore size variation, 5% of measurements were excluded from each end of the range, and these values were given in parentheses. Special color is termed follow
Total genomic DNA from the dried specimens was extracted by a Cetyltrimethyl Ammonium Bromide (CTAB) rapid plant genome extraction kit (Aidlab Biotechnologies Company Limited, Beijing, China) according to the manufacturer’s instructions with some modifications (
The polymerase chain reaction (PCR) amplification conditions for ITS were an initial denaturation at 95 °C for 3 min, followed by 35 cycles at 94 °C for 40 s, 54 °C for 45 s, and 72 °C for 1 min, and a final extension at 72 °C for 10 min (
The species, specimens, and GenBank accession numbers of the sequences used in this study are shown in Table
List of species, specimens, and GenBank accession numbers of the sequences used in this study. New species are in bold, * indicates type material, holotype, and - refers to the data unavailability.
Species name | Samples | Country | GenBank Accession no. | |
---|---|---|---|---|
ITS | nLSU | |||
Botryobasidium acanthosporum | Yuan 17989 | China | PP229511 | - |
B. acanthosporum | Yuan 18083* | China | PP229512 | PP218361 |
B. acanthosporum | Yuan 18128 | China | PP229517 | - |
B. acanthosporum | Yuan 16326 | China | PP229497 | - |
B. asperulum | RAS552 | USA | OR471090 | OR470959 |
B. asperulum | RAS578 | USA | OR471100 | OR470964 |
B. aureum | RAS571 SV2 | USA | OR471099 | - |
B. aureum | RAS571 SV1 | USA | OR471098 | - |
B. bambusinum | CLZhao 29938 | China | PQ539059 | PQ539062 |
B. bambusinum | CLZhao 29936 | China | PQ539058 | PQ539061 |
B. bambusinum | CLZhao 29916* | China | PQ539057 | PQ539060 |
B. botryosum | AFTOL-ID 604 | USA | DQ267124 | DQ089013 |
B. candicans | UC2022891 | USA | KP814227 | - |
B. candicans | UC2022893 | USA | KP814200 | - |
B. candicans | HFRG_LG230226_1_FRDBI_29580226 | UK | OR896129 | - |
B. coniferarum | LWZ20210928-3* | China | OR557259 | OR527282 |
B. coniferarum | LWZ20171016-15 | China | OR557262 | OR527286 |
B. conspersum | AFTOL-ID 1766 | USA | DQ911612 | DQ521414 |
B. conspersum | RAS259 | USA | OR471145 | - |
B. gossypirubiginosum | CLZhao 26052* | China | OR668924 | OR708665 |
B. gossypirubiginosum | Dai 26208 | China | PQ285750 | - |
B. incanum | Dai 25375 | China | PQ285751 | PQ28566 |
B. incanum | CLZhao 26697 | China | OR668923 | OR708664 |
B. indicum | Yuan 18434 | China | PP209217 | PP218365 |
B. indicum | hr5326 | China | OP806032 | - |
B. intertextum | UC2022959 18S | USA | KP814540 | - |
B. laeve | RAS762 | USA | OR471128 | PP959648 |
B. latihyphum | Dai 26858* | China | PQ279526 | PQ282521 |
B. latihyphum | Yuan 16496 | China | PP331854 | PP218153 |
B. leptocystidiatum | Yuan 17706 | China | PP209200 | PP218353 |
B. leptocystidiatum | Yuan 17708* | China | PP209197 | PP218354 |
B. robustius | CBS:945.69 | Czech | MH859491 | MH871272 |
B. robustius | iNaturalist 162067551 | USA | PP436446 | - |
B. rubiginosum | RAS776 taxon1 | USA | OR471136 | - |
B. simile | RAS793 | USA | OR471147 | - |
B. simile | RAS794 | USA | OR471146 | - |
B. subcoronatum | RAS770 SV1 | USA | OR471132 | - |
B. subcoronatum | RAS770 SV2 | USA | OR471133 | - |
B. subovalibasidium | Yuan 16439 | China | PP209199 | PP218152 |
B. subovalibasidium | Yuan 18179* | China | PP209196 | PP218362 |
B. subincanum | LWZ20230417-17b | China | PP959661 | PP959649 |
B. subincanum | LWZ20230417-41a | China | PP959660 | - |
B. tubulicystidium | DK14 139 | USA | OL436769 | - |
B. vagum | LWZ20191016-22 | USA | PP959659 | PP959648 |
B. xizangense | LWZ20230722-25a* | China | PP959663 | PP959650 |
B. xizangense | LWZ20230722-16a | China | PP959662 | - |
B. yunnanense | CLZhao 24877* | China | OR708666 | OR668925 |
B. zhejiangensis | Dai 25056* | China | PQ279530 | PQ282525 |
B. zhejiangensis | Dai 24851 | China | PQ279529 | PQ282524 |
Lyomyces allantosporus | FR 0249548 | France | NR_154135 | - |
L. pruni | GEL2327 | Germany | DQ340312 | - |
For the phylogenetic analyses, the combined two-marker dataset (ITS+nLSU) included sequences from 57 samples representing 20 taxa. Lyomyces allantosporus Riebesehl et al. and Lyomyces pruni (Lasch) Riebesehl & Langer were chosen as the outgroups (
Maximum likelihood (ML) analyses were conducted using RAxML-HPC2 via the CIPRES Science Gateway (www.phylo.org;
The combined dataset of ITS+nLSU contained sequences from 47 fungal specimens representing 25 Botryobasidium taxa (2 new species and another 23 taxa). The combined dataset has an aligned length of 2,027 characters, of which 1,431 characters are constant, 126 are variable and parsimony uninformative, and 470 are parsimony informative. The MP analysis yielded two equally most parsimonious trees (TL = 1,672, CI = 0.587, RI = 0.856, RC = 0.502, HI = 0.413). The Bayesian analysis and MP analysis resulted in a similar topology as the ML analysis. The ML tree is provided in Fig.
Maximum Likelihood tree illustrating the phylogeny of Botryobasidium based on combined ITS + nLSU sequence data. Branches are labeled with maximum likelihood bootstrap proportions equal to or higher than 50%, maximum parsimony bootstrap equal to or higher than 75%, and Bayesian posterior probabilities equal to or higher than 0.95. The red star represents the type species. The new species are in bold black.
The top five BLAST results for the ITS of Botryobasidium latihyphum on NCBI are Botryobasidium sp. (PP229498), Botryobasidium sp. (KP814226), uncultured Corticiales (FJ475677), Botryobasidium sp. (KP814344), and Botryobasidium sp (KP814346); the top five BLAST results for the nLSU of B. latihyphum on NCBI are Botryobasidium sp. (PP218153), Botryobasidium sp. (OR470952), B. incanum (OR708664), B. vagum (OR470970), and Botryobasidium sp. (OR470958); the top five BLAST results for the ITS of Botryobasidium zhejiangensis on NCBI are Botryobasidium sp. (OR471085), B. vagum (OR471082), B. vagum (MK809424), B. subcoronatum (MK809424), and B. subcoronatum (MK795129); and the top five BLAST results for the nLSU of B. zhejiangensis on NCBI are B. subcoronatum (OM083971), B. vagum (OR470953), B. subcoronatum (OR470950), B. subcoronatum (EU909344), and B. subcoronatum (OR470954).
Basidiomata : Annual, resupinate, adnate, hypochnoid, difficult to separate from substrate, up to 10 cm long, 4 cm wide, 1 mm thick at center, without odor and taste when fresh and dry; hymenophore white to cream when fresh, smooth, uncracked, cream to olivaceous buff when dry; sterile margin indistinct, thinning out, concolorous with hymenophore.
Hyphal system : Monomitic, clamp connections present, generative hyphae CB+, IKI–; tissues unchanged in KOH; subhymenial hyphae slightly thick-walled, smooth, frequently branched at right angles, loosely interwoven, 5–7 µm in diam.; subicular hyphae thick-walled, smooth, frequently branched, 7–10 µm in diam.
Hymenium : Cystidia clavate to tubular, infrequent, smooth, thin-walled, colorless, with a basal clamp connection, aseptate, CB+, IKI–, unchanged in KOH, 56–105 × 7–10 μm; basidia slightly barrel-shaped, thin-walled, with six sterigmata and a clamp connection at the base, 17–25 × 6–8.5 μm; basidioles in shape similar to basidia, but slightly smaller.
Spores : Basidiospores oval, hyaline, thin-walled, smooth, CB+, IKI–, (7.0–)7.9–10.2(–10.3) × (3.1–)3.2–4.3(–4.4) um, L = 8.78 um, W = 3.64 um, Q = 2.41 (n = 60/2).
Basidiomata : Annual, resupinate, adnate, pellicular, difficult to separate from substrate, up to 11 cm long, 7 cm wide, 1 mm thick, without odor and taste when fresh; hymenophore white to cream, smooth, uncracked, cream to slightly buff when dry; sterile margin indistinct, thinning out, concolorous with hymenophore.
Hyphal system : Monomitic, generative hyphae with clamp connections, CB+, IKI–; tissues unchanged in KOH. Subhymenial hyphae hyaline, thin-walled, smooth, frequently branched at right angles, loosely interwoven, 4–6 µm in diam.; subicular hyphae hyaline, slightly thick-walled, smooth, frequently branched, 6–8 µm in diam.
Hymenium : Basidia slightly barrel-shaped, hyaline, thin-walled, with six sterigmata and a basal clamp connection, 15–19 × 5–6 μm; basidioles in shape similar to basidia, but smaller.
Spores : Basidiospores more or less navicular, hyaline, thin-walled, smooth, CB+, IKI–, (7.8–)7.9–9.2(–9.5) × (2.5–)2.6–3.4(–3.5) μm, L = 8.47 μm, W = 3.05 μm, Q = 2.78 (n = 60/2).
Prior to this study, 17 Botryobasidium species, viz., B. acanthosporum L.J. Zhou & H.S. Yuan, B. arachnoideum G. Langer, B. asterosporum, G. Langer, B. coniferarum S.L. Liu & L.W. Zhou, B. gossypirubiginosum Qian Zhou & C.L. Zhao, B. grandisporum G. Langer, B. incanum Qian Zhou & C.L. Zhao, B. leptocystidiatum L.J. Zhou & H.S. Yuan, B. longisporum G. Langer, B. musisporum G. Langer, B. subincanum S.L. Liu & L.W. Zhou, B. sublaeve G. Langer, B. subovalibasidium L.J. Zhou & H.S. Yuan, B. tuberculisporum G. Langer, B. tubulicystidium G. Langer, B. xizangense S.L. Liu & L.W. Zhou and B. yunnanense Qian Zhou & C.L. Zhao were reported from China (
In the present study, the phylogenetic analyses using the combined ITS + nLSU dataset produced a well-resolved phylogeny (Fig.
In the phylogenetic tree (Fig.
The wood-inhabiting fungi are a widely studied group of the kingdom fungi, which can promote the material circulation and energy flow of the forest ecosystem and bring great economic value. Further investigation of wood-inhabiting fungi in different forestry habitats will enrich the fungal diversity in China and the world. (
1 | Generative hyphae with simple septa | 2 |
– | Generative hyphae with clamp connections | 17 |
2 | Cystidia present | B. acanthosporum |
– | Cystidia absent | 3 |
3 | Chlamydospores present | B. subovalibasidium |
– | Chlamydospores absent | 4 |
4 | Conidia present | 5 |
– | Conidia absent | 6 |
5 | Basidiospores > 13 μm long | B. robustius |
– | Basidiospores < 13 μm long | B. bambusinum |
6 | Basidia with six sterigmata | 7 |
– | Basidia with four sterigmata | 15 |
7 | Basidiospores mostly > 9 μm long | 8 |
– | Basidiospores mostly < 9 μm long | 10 |
8 | Basidia > 20 μm long | 9 |
– | Basidia < 20 μm long | B. danicum |
9 | Basidiomata reticulate to floccose | B. vagum |
– | Basidiomata hypochnoid | B. botryosum |
10 | Basidia obovate | B. aureum |
– | Basidia subcylindrical | 11 |
11 | Basidia > 8 μm wide | 12 |
– | Basidia < 8 μm wide | 13 |
12 | Basidiomata floccose | B. laeve |
– | Basidiomata pellicular | B. subincanum |
13 | Basidiospores navicular | 14 |
– | Basidiospores subcylindrical | B. conspersum |
14 | Basal hyphae > 8 μm in diam | B. candicans |
– | Basal hyphae < 8 μm in diam | B. xizangense |
15 | Basidiomata floccose to cotton | B. gossypirubiginosum |
– | Basidiomata hypochnoid | 16 |
16 | Basidiospores > 7 μm wide | B. isabellinum |
– | Basidiospores < 7 μm wide | B. incanum |
17 | Basidia mostly < 6 μm wide | 18 |
– | Basidia mostly > 6 μm wide | 19 |
18 | Basidiospores > 2.5 μm wide | B. zhejiangensis |
– | Basidiospores < 2.5 μm wide | B. intertextum |
19 | Basidiospores > 8 μm long | B. latihyphum |
– | Basidiospores < 8 μm long | 20 |
20 | Cystidia absent | B. subcoronatum |
– | Cystidia present | B. leptocystidiatum |
The authors have declared that no competing interests exist.
No ethical statement was reported.
The research is supported by the National Natural Science Foundation of China (Project No. 32300013, 32300002) and the Postdoctoral Fellowship Program (Grade C) of the China Postdoc-toral Science Foundation (GZC20230254).
All authors have contributed equally.
Xin Li https://orcid.org/0009-0001-1625-8589
Xin Zhang https://orcid.org/0009-0005-8363-7852
Yi-Fei Sun https://orcid.org/0000-0003-3997-3662
Zhen-Hao Li https://orcid.org/0000-0001-8279-8981
An-Hong Zhu https://orcid.org/0000-0002-2812-8108
Ying-Da Wu https://orcid.org/0000-0003-1295-4015
All of the data that support the findings of this study are available in the main text.