Research Article
Print
Research Article
Unveiling four new taxa and Nigrosynnema natarajanensis comb. nov. in Stachybotryaceae (Hypocreales) from monocotyledon plants in Guangdong Province, China
expand article infoChunfang Liao§, Mingkwan Doilom, D. Jayarama Bhat|, Kandawatte Wedaralalage Thilini Chethana§, Khanobporn Tangtrakulwanich§, Yunhui Yang§, Fatimah Al-Otibi, Kevin D. Hyde§, Wei Dong
‡ Zhongkai University of Agriculture and Engineering, Guangzhou, China
§ Mae Fah Luang University, Chiang Rai, Thailand
| Vishnugupta Vishwavidyapeetam, Gokarna, India
¶ King Saud University, Riyadh, Saudi Arabia
Open Access

Abstract

Members of Stachybotryaceae are distributed worldwide, with certain species playing a significant role as bio-degraders and some causing diseases in plants, humans, and animals. Other species within this family can be found in soil and have been reported as saprobes in various plants. In this study (2021–2022), fungal taxa resembling Stachybotryaceae, isolated from dead leaves of Agave sisalana and a dead stem of Wurfbainia villosa in Guangdong Province, China, are identified based on morphological characteristics and molecular data. Multi-locus phylogeny based on calmodulin (cmdA), internal transcribed spacer (ITS), the large subunit nuclear rDNA (LSU), RNA polymerase II second largest subunit (rpb2), the partial translation elongation factor 1-α (tef1-α), and β-tubulin (tub2) revealed that nine strains were grouped within Stachybotryaceae. Nigrosynnema guangdongense gen. et sp. nov., typical of Stachybotryaceae but having unusual olivaceous brown to black synnemata that are narrower towards the apex and produce phialidic, aseptate, slimy conidia in black and glistening heads, is introduced. Additionally, Brevistachys wurfbainiae and Sirastachys guangdongensis are introduced as new species. Stachybotrys microsporus is a new host record for Agave sisalana. The present study provides comprehensive descriptions, illustrations, and molecular data analyses of the newly discovered taxa and newly recorded species as a taxonomic and phylogenetic contribution to Stachybotryaceae. Furthermore, a new combination, Nigrosynnema natarajanensis, is proposed for the previously described Virgatospora natarajanensis.

Key words:

4 new taxa, Asparagaceae, Hyphomycetes, saprobic fungi, Sordariomycetes, taxonomy, Zingiberaceae

Introduction

The family Stachybotryaceae (as Stachybotriaceae), belonging to Hypocreales, Sordariomycetes (Hyde et al. 2024), was established to accommodate the genera Myrothecium, Peethambara, and Stachybotrys, with Stachybotrys as the type (Crous et al. 2014). The members of this family are commonly isolated from soil and dead plant materials (Jie et al. 2012; Lombard et al. 2016; Hyde et al. 2017). Some species have been reported as pathogenic to plants and animals, with some posing a substantial risk to human health (Ben et al. 2015).

The polyphyletic nature of the genera Myrothecium and Stachybotrys was addressed by Lombard et al. (2016) through phylogenetic analyses using cmdA, ITS, LSU, rpb2, tef1-α, and tub2. As a result of their study, several species previously classified under Myrothecium and Stachybotrys were transferred into numerous other genera. Thirteen myrothecium-like genera were introduced, viz., Albifimbria, Capitofimbria, Dimorphiseta, Gregatothecium, Inaequalispora, Myxospora, Neomyrothecium, Paramyrothecium, Parvothecium, Smaragdiniseta, Striaticonidium, Tangerinosporium, and Xenomyrothecium. Eight stachybotrys-like genera were established, viz., Achroiostachys, Brevistachys, Cymostachys, Globobotrys, Grandibotrys, Kastanostachys, Sirastachys, and Striatibotrys (Lombard et al. 2016). In total, 33 genera were accommodated in the Stachybotryaceae, of which 21 were newly introduced and 20 were new combinations (Lombard et al. 2016). Additional novel genera were later introduced into this family by Hernandez-Restrepo et al. (2016), Gordillo and Decock (2017), Tibpromma et al. (2018), and Hyde et al. (2020). To date, 39 genera are accepted in this family (Hyde et al. 2020; Wijayawardene et al. 2022; Hyde et al. 2024). The family Stachybotryaceae is characterized by asexual morphs having mononematous, sporodochial, or synnematous conidiophores and phialidic conidiogenous cells that produce conidia in chains or in slimy masses (Crous et al. 2014; Wang et al. 2015; Lombard et al. 2016; Hyde et al. 2020). The sexual morph is described as having solitary ascomata, superficial or completely immersed in host tissue, bright to dark yellow, orange, or black that remain unchanged when treated with KOH, unitunicate asci rounded to nearly truncate at the apex with a refractive apical ring, and ellipsoidal to fusiform to broadly reniform ascospores (Subramanian and Bhat 1978; Crous et al. 2014; Lombard et al. 2016; Hyde et al. 2020).

The type genus Stachybotrys was introduced by Corda (1837) with St. chartarum as the type species. Stachybotrys shares a morphology similar to Memnoniella (introduced by Von Höhnel (1924), based on Me. aterrima) in having branched or unbranched, erect, thin-walled, smooth, or verrucous conidiophores (Bisby 1943; Wang et al. 2015). The conidia of Memnoniella are borne in dry chains, while those in Stachybotrys are produced in slimy masses. Smith (1962) considered both Memnoniella and Stachybotrys to be congeneric, arguing that the arrangement of conidia in dry chains (Memnoniella) or slimy masses (Stachybotrys) is insufficient for differentiating these two genera. In agreement with the argument provided by Smith (1962), Wang et al. (2015) synonymized Memnoniella under Stachybotrys. Phylogenetic analyses by Lombard et al. (2016), which included a broader sampling of taxa and more loci, clearly demonstrated that the isolate previously identified as Memnoniella echinata (CBS 216.32) (Me. aterrima) by Galloway (1933) formed a distinct and well-supported clade separate from the Stachybotrys str clade. Therefore, Lombard et al. (2016) resurrected Memnoniella and designated the type species of the genus, Me. Echinata, as the epitype, using Galloway’s strain (Galloway 1933). Morphologically, Memnoniella can be distinguished from Stachybotrys by having mostly smooth, thick-walled, and unbranched conidiophores that give rise to linear dry chains of conidia (Lombard et al. 2016). The study by Lombard et al. (2016) was further supported by Lin et al. (2016), Doilom et al. (2017), Hyde et al. (2020), Mapook et al. (2020), Samarakoon et al. (2021), and Liu et al. (2024), all of which treated Memnoniella and Stachybotrys as distinct genera.

Brevistachys, introduced by Lombard et al. (2016) with B. variabilis as the type species, is characterized by conspicuously short conidiophores and conidiogenous cells that are borne either on conidiophores or directly from the vegetative hyphae, and obovoid to globose to ossiform to ellipsoidal conidia, aggregated in slimy masses. Five species are listed under Brevistachys in Index Fungorum (http://www.indexfungorum.org/names/names.asp; accessed on 12 October 2024). The asexual morph is only observed in Brevistachys species, which were isolated from Musa and Zingiber (Cooke 1883; Lombard et al. 2016). Sirastachys, introduced by Lombard et al. (2016), is typified by Si. phaeospora. The genus is characterized by cylindrical synnemata formed in culture, which consist of bundles of parallelly compacted, erect hyphae, with conidiophores arising laterally from synnemata. Sirastachys species were mainly isolated from leaves, with one species isolated from soil under Thuja occidentalis (Lombard et al. 2016; Crous et al. 2018; Tibpromma et al. 2018). Nine species are listed under Sirastachys Fungorum (http://www.indexfungorum.org/names/names.asp; accessed on 25 July 2024).

In this study, we introduce one new genus, three new species, and one new host record in Stachybotryaceae from dead stems of Wurfbainia villosa and a dead leaf of Agave sisalana in Guangdong Province, China, based on the morphological characteristics and multi-locus phylogenetic analyses of cmdA, ITS, LSU, rpb2, tef1-α, and tub2. The new taxa, Brevistachys wurfbainiae sp. nov., Nigrosynnema guangdongense gen. et. sp. nov., and Sirastachys guangdongensis sp. nov., are compared to morphologically and phylogenetically closely related taxa. A new host record, Stachybotrys microsporus, is presented with a detailed description and illustration supported by phylogenetic evidence. Additionally, a new combination, Nigrosynnema natarajanensis (= Virgatospora natarajanensis), is proposed based on the similarity in morphological characteristics aligning with the generic concept of Nigrosynnema and supported by phylogenetic evidence of the type species of Virgatospora, V. echinofibrosa.

Materials and methods

Sample collection, morphological studies, and isolation

Samples of dead leaves of Agave sisalana and dead stems of Wurfbainia villosa were collected in Guangdong Province, China, during the winter to spring seasons of 2021 and 2022, and the important collection information was noted (Rathnayaka et al. 2024). The morphological characteristics and microscopic examination of fungal structures were observed using the method described by Liao et al. (2023). Single spore isolation was performed following the methodology outlined in Senanayake et al. (2020). The living cultures were deposited in the Zhongkai University of Agriculture and Engineering Culture Collection (ZHKUCC), Guangdong, China. Specimens were deposited in the Mycological Herbarium of Zhongkai University of Agriculture and Engineering (MHZU), Guangzhou, China. The newly discovered species were registered in Faces of Fungi (FoF) (http://www.facesoffungi.org) (Jayasiri et al. 2015) and the Index Fungorum (IF) databases (http://www.indexfungorum.org/names/names.asp).

DNA extraction, PCR amplification, and sequencing

The genomic DNA was extracted from the fungal mycelia cultivated in the dark at 25 °C on PDA for two weeks using the MagPure Plant DNA AS Kit, following the manufacturer’s instructions (Guangzhou Magen Biotechnology Co., Ltd, Guangdong, China). Extracted DNA was preserved at -20 °C for further molecular studies. The calmodulin (cmdA), internal transcribed spacer (ITS), large subunit rDNA (LSU), RNA polymerase II second largest subunit (rpb2), the partial translation elongation factor 1-α (tef1-α), and β-tubulin (tub2) were amplified and sequenced using primer CAL-228F (Carbone and Kohn 1999) and CAL-2RD (Groenewald et al. 2013), ITS4 and ITS5 (White et al. 1990), LR5 and LR0R (Vilgalys and Hester 1990), rpb2-5f and rpb2-7cR (Liu et al. 1999), EF1-728F (Carbone and Kohn 1999), EF2 (O’Donnell et al. 1998), and BT2a and BT2b (Glass and Donaldson 1995), respectively.

The polymerase chain reaction (PCR) contained a total of 25 µl of mixture, including 9.5 µl of ddH2O, 12.5 µl of 2 × Taq Master Mix (a mixture of dNTPs, optimized buffer, and Taq (Nanjing Vazyme Biotech Co., Ltd., Nanjing, China)), and 1 µl of each of the primer and DNA template. The PCR thermal cycling program for ITS and LSU amplification was conducted with an initial denaturation at 95 °C for 3 min, followed by 35 cycles of 94 °C for 30 sec; the annealing temperature was set to 52 °C for 30 sec; the extension step was performed at 72 °C for 1 min; and final elongation was carried out at 72 °C for 10 min. The annealing temperatures were altered to 53.5 °C for cmdA and tef1-α and 55 °C (45 sec) for tub2. PCR was performed for the rpb2 in a thermal cycle as follows: an initial denaturation at 95 °C for 3 min, followed by 35 cycles at 94 °C for 1 min, an annealing temperature of 52 °C for 2 min, and extension at 72 °C for 1.5 min, with a final elongation at 72 °C for 10 min. The PCR products were purified and sent for sequencing at Tianyi Huiyuan Gene Technology & Services Co. (Guangdong, China). All sequences obtained in this study have been deposited in GenBank (available online: http://www.ncbi.nlm.nih.gov).

Phylogenetic analyses

The original sequence obtained from the sequencing company was cross-checked by verifying chromatograms using BioEdit v. 7.2.3 (Hall 1999), and subsequently, consensus sequences were generated using OFPT (Zeng et al. 2023) and SeqMan v. 7.0 (Lasergene, Madison, WI, USA). The consensus sequences of our fungal strains from each locus were subjected to a basic local alignment search tool (BLAST) search in GenBank. The reference sequences and outgroup taxa used for phylogenetic analyses were selected based on recent relevant literature (Lombard et al. 2016; Tibpromma et al. 2018; Mapook et al. 2020), obtained from GenBank. The phylogenetic analyses utilized 184 sequences (Table 1), with Fusarium sambucinum strains CBS 146.95 and CBS 136.24 used as the outgroup taxa. Six loci, cmdA, ITS, LSU, rpb2, tef1-α, and tub2, were aligned using the MAFFT version v. 7 online program (https://mafft.cbrc.jp/alignment/server/; Katoh and Standley 2013). Subsequently, the dataset was trimmed with TrimAl v.1.3 using the Gappyout option (Capella-Gutiérrez et al. 2009). The alignments were transformed into NEXUS format using the ALignment Transformation EnviRonment online platform (http://www.sing-group.org/ALTER/).

Table 1.

Names, culture collection numbers, and corresponding GenBank accession numbers of the taxa used in the phylogenetic analyses. The new strains in this study are indicated in cells with light blue shading. “T” is used to represent ex-type. “-” denotes unavailable information.

Taxa Culture collection numbers GenBank accession numbers
cmdA ITS LSU rpb2 tef1-α tub2
Achroiostachys humicola CBS 317.72 KU845777 KU845797 KU845817 KU845835 KU845852 KU845758
A. humicola CBS 868.73T KU845779 KU845799 KU845819 KU845837 KU845854 KU845760
A. levigata CBS 185.79T KU845785 KU845805 KU845825 KU845841 KU845860 KU845765
A. levigata CBS 363.58 KU845786 KU845806 KU845826 KU845842 KU845861 KU845766
Albosynnema elegans GB 3101T - - AF193226 - - -
Albifimbria verrucaria CPC 30056 KU845869 KU845885 KU845904 KU845923 KU845942 KU845961
Al. verrucaria CBS 176.27 KU845870 KU845886 KU845905 KU845924 KU845943 KU845962
A.. viridis CBS 244.78 - KU845897 KU845916 KU845935 KU845954 KU845973
A.. viridis CBS 449.71T KU845879 KU845898 KU845917 KU845936 KU845955 KU845974
Alfaria caricicola CBS 113567T KU845976 KU845983 KU845992 KU846001 KU846008 KU846014
A.f. cyperiesculenti CPC 23153T - KJ869143 KJ869200 - - -
A.f. thymi CBS 447.83T KU845981 KU845990 KU845999 - KU846013 KU846021
Alfariacladiella spartii CPC 24966 - NR_164243 NG_070399 - - -
Brevistachys globosa CBS 141056T KU846024 KU846038 KU846057 - KU846085 KU846101
B. globosa CPC 15952 KU846025 KU846040 KU846059 - KU846087 KU846103
B. globosa CPC 16060 - KU846042 KU846061 - KU846089 KU846105
B. lateralis CBS 141058T KU846027 KU846043 KU846062 KU846074 KU846090 KU846106
B. ossiformis CBS 696.73T - KU846044 KU846063 - - KU846107
B. ossiformis CBS 112792 KU846028 KU846045 KU846064 KU846075 KU846091 KU846108
B. ossiformis CPC 16031 KU846029 KU846046 KU846065 - KU846092 KU846109
B. subsimplex ATCC 32888T - AF205439 - - - -
B. variabilis CBS 141057 KU846030 KU846047 KU846066 KU846076 KU846093 KU846110
B. wurfbainiae ZHKUCC 23-1011T PP746514 PP645738 PP683135 PP746507 PP746523 PP746532
B. wurfbainiae ZHKUCC 23-1012 PP746515 PP645739 PP683136 PP746508 PP746524 PP746533
B. wurfbainiae ZHKUCC 23-1013 PP746516 PP645740 PP683137 PP746509 PP746525 PP746534
Capitofimbria compacta CBS 111739T KU846261 KU846287 KU846317 KU846349 KU846378 KU846404
C. compacta MUCL 50238 - KU878556 KU878557 KU878558 - KU878559
Cymostachys coffeicola CBS 252.76T KU846035 KU846052 KU846071 KU846081 KU846097 KU846113
Cy. coffeicola CPC 25009 - KU846053 - - - -
Cy. fabispora CBS 136180T KU846036 KU846054 KU846072 KU846082 KU846098 KU846114
Cy. fabispora CPC 24352 - KU846055 - KU846083 KU846099 -
Didymostilbe aurantispora CBS 616.85T - - KU846344 - - -
D. matsushimae CBS 549.84 - - KU846345 - - -
D. matsushimae CCFC 54984 - - AY283545 - - -
Digitiseta dimorpha MUCL 54683T - KY389329 KY389349 KY389367 KY769935 KY366460
D.. multidigitata MUCL 41187T - KY389325 KY389345 KY389363 KY769934 KY366456
D.. parvidigitata MUCL 48180T - KY389326 KY389346 KY389364 KY769931 KY366457
D.. parvidigitata MUCL 48271 - KY389327 KY389347 KY389365 KY769932 KY366458
D.. parvidigitata MUCL 48260 - KY389328 KY389348 KY389366 KY769933 KY366459
D.. setiramosa CBS 534.88 - AY254156 - - KY769930 -
Dimorphiseta terrestris CBS 127345T KU846284 KU846314 KU846346 KU846375 KU846401 KU846431
Fusarium sambucinum CBS 146.95 - - KM231682 KM232381 - -
F. sambucinum CBS 136.24 - - MH866281 - - -
Globobotrys sansevieriicola CBS 138872T - KR476717 KR476752 - KR476793 KR476794
Grandibotrys pseudotheobromae CBS 136170T - KU846135 KU846161 KU846188 KU846215 KU846241
G. pseudotheobromae CBS 136391 - KU846136 KU846162 KU846189 KU846216 KU846242
G. xylophila CBS 136179T KU846115 KU846137 KU846163 KU846190 KU846217
Gregatothecium humicola CBS 205.96T KU846285 KU846315 KU846347 KU846376 KU846402 KU846432
Hyalinostachys cylindrospora MFLUCC 17-2583 - NR_182450 NG_148956 - - -
Inaequalispora prestonii CBS 175.73T KU846286 KU846316 KU846348 KU846377 KU846403 KU846433
Kastanostachys aterrima CBS 101310T - - AF178565 KU846191 - -
Koorchaloma bambusae MFLU 19-2899 - MT185516 MT183479 MT432230 - -
K. europaea PRM 953076 - LR963471 - - - -
K. krabiense MFLUCC 16-0317T - MH388348 MH376721 MH412729 - -
K. oryzae MFLUCC 21-0055T - MZ519544 MZ519543 MZ508427 - -
K. spartinicola SAP 130 - AF422963 - - - -
Koorchalomella salmonispora MD6018 - - KX611345 - - -
Melanopsamma pomiformis CBS 325.90 KU846031 KU846048 KU846067 KU846077 KU846094 KU846111
M. pomiformis CBS 101322T KU846032 KU846049 KU846068 KU846078 - -
M. pomiformis CBS 114119 KU846033 KU846050 KU846069 KU846079 KU846095 KU846112
M. xylophila CBS 100343T KU846034 KU846051 KU846070 KU846080 KU846096 -
Memnoniella alishanensis MFLUCC 20-0168T - MW114372 - - - MW148278
Me. brunneoconidiophora CBS 109477 - KU846138 KU846165 KU846192 KU846218 KU846243
Me. brunneoconidiophora CBS 136191T KU846116 KU846139 KU846166 KU846193 KU846219 KU846244
Me. celtidis MFLUCC 20-0040T - MW114374 - - - MW148280
Me. celtidis NCYUCC 19-0326 - MW114375 - - - MW148281
Me. chromolaenae MFLUCC 17-1507 - NR_168873 MT214465 - - -
Me. dichroa CBS 526.50 KU846117 KU846140 KU846167 KU846194 KU846220 -
Me. dichroa CBS 123800 KU846118 KU846141 KU846168 KU846195 KU846221 -
Me. echinata CBS 216.32T KU846119 KU846142 KU846169 KU846196 KU846222 KU846245
Me. echinata DAOMC 173162 KU846125 JN942886 JN938868 KU846202 KU846228 KU846250
Me. echinata DAOMC 235365 KU846126 KU846149 KU846176 KU846203 KU846229 KU846251
Me. ellipsoidea CBS 136199 KU846127 KU846150 KU846177 KU846204 KU846230 KU846252
Me. ellipsoidea CBS 136200 KU846128 KU846151 KU846178 KU846205 KU846231 KU846253
Me. ellipsoidea CBS 136201T KU846129 KU846152 KU846179 KU846206 KU846232 KU846254
Me. humicola CBS 463.74T KU846130 KU846154 KU846181 KU846208 KU846234
Me. longistipitata CBS 136197 KU846131 KU846155 KU846182 KU846209 KU846235 KU846256
Me. longistipitata ATCC 22699 - AF081471 - - - -
Me. mori MFLUCC 18-1640T - MW114377 - - - MW148283
Me. nilagirica MFLUCC 15-0660 - KU760374 - KU760394 - -
Me. oblongispora MFLUCC 17-2064 - MT310665 - MT394724 - -
Me. oblongispora MFLUCC 15-1074 KY124123 KU760376 - KU760396 KY124127
Me. oenanthes ATCC 22844T - AF081473 - - - -
Me. oenanthes CBS 388.73 - KU846156 KU846183 KU846210 KU846236
Me. Pseudodichroa BCRC FU31689T - ON692522 - LC714856 LC714858 LC714861
Me. Pseudodichroa BCRC FU31700 - ON692523 - LC714857 LC714859 LC714862
Me. pseudonilagirica CBS 136405T KU846132 KU846157 KU846184 KU846211 KU846237 KU846257
Me. putrefolia CBS 101177T - KU846158 KU846185 KU846212 KU846238 KU846258
Me. putrefolia CBS 136171 KU846133 KU846159 KU846186 KU846213 KU846239 KU846259
Me. sinensis YMF 1.05582T - MK773576 - MK773575 MK772066 MK773574
Memnoniella sp. MUCL 50191 KU846134 KU846160 KU846187 KU846214 KU846240 KU846260
Myrothecium inundatum CBS 196.74 KU846434 KU846451 KU846473 - KU846513 KU846532
My. inundatum CBS 275.48T KU846435 KU846452 KU846474 - KU846514 KU846533
My. inundatum CBS 120646 KU846438 KU846455 KU846477 - KU846516 KU846536
My. simplex CBS 582.93T KU846439 KU846456 KU846478 - KU846517 KU846537
Myxospora crassiseta CBS 731.83T KU846442 KU846459 KU846481 KU846497 KU846520 KU846540
Myx. crassiseta CBS 121141 KU846443 KU846460 KU846482 KU846498 KU846521 KU846541
Myx. masonii CBS 174.73T KU846445 KU846462 KU846484 KU846500 KU846523 KU846543
Neomyrothecium humicola CBS 310.96T KU846448 KU846467 KU846488 KU846505 KU846527 -
Nigrosynnema guangdongense ZHKUCC 23-1014T PP746517 PP645741 PP683138 PP668100 PP746526 PP746535
N. guangdongense ZHKUCC 23-1015 PP746518 PP645742 PP683139 PP668101 PP746527 PP746536
Paramyrothecium foliicola CBS 113121T KU846266 KU846294 KU846324 - KU846385 KU846411
P. roridum CBS 212.95 KU846269 KU846299 KU846329 KU846360 KU846389 KU846416
P. roridum CBS 357.89T KU846270 KU846300 KU846330 KU846361 KU846390 KU846417
Parvothecium terrestre CBS 198.89T KU846449 KU846468 KU846489 KU846506 KU846528 KU846548
Parvothecium terrestre CBS 534.88 KU846450 KU846469 KU846490 KU846507 KU846529 KU846549
Peethambara sundara CBS 521.96 - KU846470 KU846491 KU846508 KU846530 KU846550
Pe. sundara CBS 646.77T - KU846471 AF193245 KU846509 KU846531 KU846551
Septomyrothecium maraitiense MUCL 47202T - - KU846493 KU846510 - -
S. uniseptatum CBS 100966 - KU846472 KU846494 KU846511 - KU846552
S. uniseptatum MUCL 52944 - - KU846495 KU846512 - -
Sirastachys castanedae CBS 164.97 KU846553 KU846658 KU846771 KU846885 KU846990 KU847094
Si. castanedae CBS 531.69 KU846554 KU846659 KU846772 KU846886 KU846991 KU847095
Si. castanedae CBS 136403T KU846555 KU846660 KU846773 KU846887 KU846992 KU847096
Si. castanedae CPC 20373 KU846556 KU846661 KU846774 KU846888 KU846993 KU847097
Si. cylindrospora CBS 136166T KU846557 KU846662 KU846775 KU846889 - KU847098
Si. cylindrospora CBS 13654 KU846558 KU846663 KU846776 KU846890 KU846994 KU847099
Si. cyperacearum CBS 143444 - MH107917 MH107963 - - -
Si. guangdongensis ZHKUCC 23-1003T PP746510 PP645734 PP683131 PP754606 PP746519 PP746528
Si. guangdongensis ZHKUCC 23-1004 PP746511 PP645735 PP683132 PP754607 PP746520 PP746529
Si. longispora ATCC 32451T - AF081482 - - -
Si. pandanicola CBS 136545T - KU846664 KU846777 - - KU847100
Si. phaeospora CBS 100155T KU846560 KU846666 KU846779 KU846891 KU846995 KU847102
Si. phangngaensis MFLUCC 15-0680 - NR_168202 NG_068841 MH412735 - -
Si. phyllophila CBS 173.97 KU846565 KU846671 KU846784 KU846896 KU846998 KU847107
Si. phyllophila CBS 136169T KU846566 KU846672 KU846785 KU846897 KU846999 KU847108
Si. pseudolongispora CBS 417.93 KU846567 KU846673 KU846786 KU846898 KU847000 KU847109
Si. pseudolongispora CBS 100154T KU846568 KU846674 KU846787 KU846899 - KU847110
Sirastachys sp. CBS 308.56 KU846569 KU846675 KU846788 KU846900 KU847001 KU847111
Smaragdiniseta bisetosa CBS 459.82T KU847206 KU847229 KU847255 KU847281 KU847303 KU847319
Stachybotrys aloeticola CBS 137940T KU846570 KJ817888 KJ817890 KU846901 - KJ817886
St. aloeticola CBS 137941 KU846571 KJ817889 KJ817891 KU846902 - KJ817887
St. chartarum CBS 182.80T KU846573 KU846679 KU846792 KU846904 KU847003 KU847115
St. chartarum CBS 119371 KU846594 KU846700 KU846813 KU846925 KU847024 KU847135
St. chartarum CBS 485.48 KU846577 KU846683 KU846796 KU846908 KU847007 KU847119
St. chlorohalonata CBS 113.97 KU846635 KU846742 KU846855 KU846965 KU847065 KU847176
St. chlorohalonata CBS 127.94 KU846636 KU846743 KU846856 KU846966 KU847066 KU847177
St. chlorohalonata CBS 222.46 KU846637 KU846744 KU846857 KU846967 KU847067 KU847178
St. chlorohalonata CBS 250.89 KU846617 KU846723 KU846836 KU846948 KU847047 KU847158
St. chlorohalonata CBS 109283 KU846622 KU846728 KU846841 KU846953 KU847052 KU847163
St. chlorohalonata CBS 109285T KU846623 KU846729 KU846842 KU846954 KU847053 KU847164
St. chlorohalonata CBS 136158 KU846626 KU846732 KU846845 KU846956 KU847056 KU847167
St. dolichophialis DAOMC 227011 KU846628 KU846734 KU846847 KU846958 - KU847169
St. limonispora CBS 128809T KU846629 KU846735 KU846848 KU846959 KU847058 KU847170
St. limonispora CBS 136165 KU846630 KU846736 KU846849 KU846960 KU847059 KU847171
St. microsporus CBS 186.79 KU846631 KU846737 KU846850 DQ676580 KU847060 KU847172
St. microsporus ATCC 18852T - AF081475 - - - -
St. microsporus MFLUCC 15-0830 KY124124 KU760377 - KU760397 - KY124128
St. microsporus MFLUCC 15-1076 KY124125 KU760378 - KU760398 - KY124129
St. microsporus MFLUCC 20-0190 - MW477992 - - MW480237 MW480235
St. microsporus ZHKUCC 23-1007 PP746512 PP645736 PP683133 PP668098 PP746521 PP746530
St. microsporus ZHKUCC 23-1008 PP746513 PP645737 PP683134 PP668099 PP746522 PP746531
St. musae MFLUCC 20-0188T MW480232 NR_173231 - MW480230 - MW480234
St. musae MFLUCC 20-0152 MW480231 MW477991 - MW480229 - MW480233
St. pallescens HGUP 0146T KC305345 KC305345 - - -
St. phaeophialis KAS 525T KU846632 KU846738 KU846851 KU846962 KU847061 KU847173
St. reniformis CBS 976.95 KU846633 KU846739 KU846852 KU846963 KU847062 KU847174
St. reniformis CBS 136198 - KU846740 KU846853 - KU847063 -
St. subcylindrospora HGUP 0201T - KC305354 - - - -
St. subreniformis HGUP 1051T - KC305344 - - - -
St. subsylvatica CBS 126205T KU846634 KU846741 KU846854 KU846964 KU847064 KU847175
Stachybotrys sp. CBS 525.50 KU846645 KU846752 KU846865 KU847075 KU847186
Striatibotrys eucylindrospora CBS 203.61T KU846648 KU846755 KU846868 KU846975 KU847078 KU847189
Str. eucylindrospora CBS 136399 - KU846757 KU846870 KU846977 KU847080 KU847191
Str. eucylindrospora CBS 136547 KU846649 KU846758 KU846871 KU846978 KU847081 KU847192
Str. neoeucylindrosporus UAMH 7211 - MW187767 MW187732 MW192603 MW192605 MW192606
Str. neoeucylindrosporus UAMH 7122 - MW187766 MW187768 MW192608 MW192609 MW192610
Striaticonidium brachysporum CBS 131.71 KU847207 KU847230 KU847256 KU847282 KU847304 KU847320
Stri. brachysporum CBS 513.71T KU847209 KU847232 KU847258 KU847284 KU847305 KU847322
Stri. brachysporum CBS 126552 KU847210 KU847233 KU847259 KU847285 KU847306 KU847323
Stri. cinctum CBS 373.50 KU847214 KU847237 KU847263 KU847289 - KU847327
Stri. cinctum CBS 932.69T KU847216 KU847239 KU847265 KU847290 - KU847329
Stri. Deklijnearum CBS 143232 - NR_156676 NG_058527 - MG386158 MG386171
Stri. humicola CBS 258.76T - KU847240 KU847266 KU847311 KU847330
Stri. humicola CBS 388.97 KU847217 KU847241 KU847267 KU847291 KU847312 KU847331
Stri. synnematum CBS 479.85T KU847218 KU847242 KU847268 KU847292 - KU847332
Tangerinosporium thalitricola CBS 317.61T KU847219 KU847243 KU847269 - - KU847333
Virgatospora echinofibrosa CBS 110115 KU847220 KU847244 KU847270 KU847293 KU847313 KU847334
V. echinofibrosa MUCL 39092 - KU847245 KU847271 KU847294 - KU847335
Xenomyrothecium tongaense CBS 598.80T KU847221 KU847246 KU847272 KU847295 KU847314 KU847336
Xepicula jollymannii CBS 276.48T KU847223 KU847248 KU847274 KU847297 KU847316 KU847338
X. jollymannii CBS 126168 KU847224 KU847250 KU847276 KU847298 KU847317 KU847340
X. leucotricha CBS 278.78 KU847227 KU847253 KU847279 KU847301 - KU847343
X. leucotricha CBS 483.78 KU847228 KU847254 KU847280 KU847302 KU847318 KU847344

The combined cmdA, ITS, LSU, rpb2, tef1-α, and tub2 sequence data were performed using maximum likelihood (ML) and Bayesian inference (BI) analyses. The ML analysis was carried out in the CIPRES Science Gateway online platform (Miller et al. 2010) using RAxMLHPC v.8.2.12 on XSEDE (Stamatakis 2014) with GTR+G+I evolutionary substitution, with 1000 rapid bootstrap inferences followed by an extensive ML search. All free model parameters were estimated using the RAxML maximum likelihood method with 25 per-site rate categories. The likelihood of the final tree was evaluated and optimized under the GAMMA gamma distribution shape parameter. The Bayesian Inference (BI) analysis was conducted utilizing the Markov Chain Monte Carlo (MCMC) method and executed in MrBayes XSEDE (3.2.7a) (Huelsenbeck and Ronquist 2001). The simulation was conducted by running six concurrent Markov chains for 5,000,000 generations, with tree sampling occurring every 100th generation. The phylogenetic trees were visualized using FigTree v. 1.4.0 (Rambaut 2009) and formatted using PowerPoint 2010 (Microsoft Corporation, WA, United States). New species are established based on the recommendations of Jeewon and Hyde (2016).

Results

Phylogenetic analyses

The phylogenetic tree was constructed using the combined cmdA, ITS, LSU, rpb2, tef1-α, and tub2 sequence data of 184 strains (including our new strains) through ML and BI analyses. The total length of the dataset, including gaps, was 5060 base pairs (cmdA: 1–930, ITS: 931–1657, LSU: 1658–2494, rpb2: 2495–3274, tef1-α: 3275–4646, tub2: 4647–5060). The topology of the ML analysis resembled that of the BI analysis. The highest-scoring RAxML tree, with a final ML optimization likelihood value of -87901.129587, is depicted in Fig. 1. The matrix consisted of 1060 distinct alignment patterns, with 44.52% undetermined characters or gaps. The estimated base frequencies were as follows: A = 0.235675, C = 0.272976, G = 0.268686, T = 0.222663; substitution rates AC = 1.088667, AG = 3.185610, AT = 1.213744, CG = 0.825063, CT = 4.778952, GT = 1.000000; gamma distribution shape parameter α = 0.307577. In this study, the phylogenetic analyses showed that our strains belong to Stachybotryaceae. The tree topology in this study is almost similar to the previous studies of Lombard et al. (2016) and Hyde et al. (2020). However, Lombard et al. (2016) and Hyde et al. (2020) constructed the tree using LSU and rpb2. The inclusion of an increasing number of newly discovered genera and taxa, including Digitiseta gen. nov. and additions to Inaequalispora and Parvothecium as reported by Gordillo and Decock (2017), has resulted in slight alterations to the positions of some genera. Additionally, our phylogenetic tree showed that species of Koorchaloma are paraphyletic and grouped with Didymostilbe instead of Koorchalomella and Alfariacladiella as shown in Hyde et al. (2020). Two new strains (ZHKUCC 23-1007, ZHKUCC 23-1008) constituted a highly supported subclade with Stachybotrys microsporus (type strain, CBS 126205) with 100% ML and 1.00 BYPP. The novel strains ZHKUCC 23-1003 and ZHKUCC 23-1004 formed a sister subclade with Sirastachys phaeospora (type strain, CBS 100155) with 99% ML bootstrap support and 1.00 BYPP. Three strains, ZHKUCC 23-1011, ZHKUCC 23-1012, and ZHKUCC 23-1013, formed a sister subclade with Brevistachys subsimplex (type strain, ATCC 32888) with 75% ML and 0.93 BYPP. Two strains, ZHKUCC 23-1014 and ZHKUCC 23-1015, formed a distinct clade with Digitiseta species with 94% ML and 1.00 BYPP.

Figure 1. 

Phylogram generated from maximum likelihood analysis (RAxML) of strains in Stachybotryaceae based on the combined cmdA, ITS, LSU, rpb2, tef1-α, and tub2 sequence data. Maximum likelihood bootstrap values ≥ 70% (ML) and Bayesian posterior probabilities ≥ 0.90 (ML/BYPP) are provided at the nodes. The tree is rooted with Fusarium sambucinum strains CBS 136.24 and CBS 146.95. The hyphen (-) represents support values < 70% ML and < 0.90 BYPP. The ex-type strains are denoted as “T”, while the newly isolated strains are highlighted in blue.

Taxonomy

Brevistachys wurfbainiae C.F. Liao, K.D. Hyde & Doilom, sp. nov.

Fig. 2

Etymology.

In reference to the host genus Wurfbainia, from which the holotype was isolated.

Holotype.

MHZU 23-0254.

Description.

Saprobic on dead stem of Wurfbainia villosa. Sexual morph: undetermined. Asexual morph: Colonies superficial on host substrate, effuse, hairy, gregarious, with numerous dark conidia on the substrate visible as black granular powder. Conidiophores 80–235 × 3–5.5 µm (av. 155 × 4.5 μm, n = 20), macronematous, mononematous, erect, simple, unbranched, straight or flexuous, subcylindrical, unevenly olivaceous brown, 1–3-septate, not constricted at the septa, smooth-walled to finely verruculose in the above half, thick-walled, with bulbous apices, bearing 5–8 conidiogenous cells at the tip, often intermixed with setiferous, flexuous, sterile filaments. Setae 230–390 × 3–6 µm (av. 305 × 4.5 μm, n = 20), arising from the basal stroma, adjacent to cells that give rise to fertile conidiophores, unbranched, straight, and subhyaline at base, mostly flexuous, olivaceous green, in above half, moderately thick-walled, smooth, septate, acute at apex. Conidiogenous cells 6–10 × 4–7 µm (av. 7.5 × 5.5 μm, n = 30), enteroblastic, monophialidic, discrete, determinate, terminal, elongate doliiform, pale to dark brown, smooth-walled, with a conspicuous collarette. Conidia 5–9 µm diam. (av. 7 μm, n = 30), acrogenous, solitary, dry, obovoid to subglobose, aseptate, hyaline, and smooth-walled when young, pale brown, mostly olivaceous to dark brown, verrucose to warty-surfaced at maturity.

Culture characteristics.

Colonies on PDA reaching 2 cm in two weeks at 28 ± 2 °C, medium dense, raised, sparse, filamentous, floccose to fluffy, velvety, filiform at margin, cream to pale brown from above; brown to pale luteous from reverse.

Material examined.

China • Guangdong Province, Yangchun City, Yongning Town (22.256185°N, 111.609037°E, 270 m), on dead stems of Wurfbainia villosa (Lour.) Škorničk. & A.D. Poulsen. (Zingiberaceae), 10 April 2022, C.F. Liao & Y.H. Yang, YAM16 (MHZU 23-0254, holotype) • ex-type, ZHKUCC 23-1011 • ibid., living culture ZHKUCC 23-1012, and ZHKUCC 23-1013.

Figure 2. 

Brevistachys wurfbainiae (MHZU 23-0254, holotype) a, b colonies on the surface substrate c, d conidiophores, setae or conidiophore-like (arrow), conidiogenous cells, and conidia e, f conidiogenous cells with conidia g conidia h germinated conidium i, j colonies on PDA (front and below). Scale bars: 100 µm (b–d); 10 µm (e, f); 5 µm (g); 20 µm (h).

Notes.

Brevistachys wurfbainiae differs from other known species in the genus Brevistachys by having erect to flexuous, sterile, setiferous filaments intermixed with fertile conidiophores. Brevistachys wurfbainiae resembles B. subsimplex but differs from the latter in having slightly longer conidiophores with bulbous apices (80–235 × 3–5.5 µm vs. 80–200 (most frequently 100–140) × 3–5.5 µm) and shorter conidiogenous cells (6–10 × 4–7 µm vs. 8–13 × 4–6 µm). The conidiophores of B. wurfbainiae are 1–3-septate, while they are 2–6-septate in B. subsimplex (Deighton 1960). The phylogenetic analyses revealed that B. wurfbainiae (ZHKUCC 23-1011, ZHKUCC 23-1012, and ZHKUCC 23-1013) formed a separate branch from B. subsimplex (ex-type CBS 100155) with 75% ML bootstrap support and 0.93 BYPP (Fig. 1). Based on distinct morphology and phylogenetic support, we propose B. wurfbainiae as a new species.

Nigrosynnema C.F. Liao, K.D. Hyde & Doilom, gen. nov.

Etymology.

The name refers to the characteristic black synnemata formed on natural substrate.

Description.

Saprobic on dead plant material. Sexual morph: undetermined. Asexual morph: Conidiomata synnematous or sporodochial. Synnemata unbranched, subcylindrical, globose to subglobose head, robust at base, olivaceous brown to black, straight or curved in the upper portion, consisting of bundles of parallelly arranged, tightly compacted conidiophores. Sporodochia stromatic, superficial, scattered or gregarious, irregular, pulvinate, with white mycelium surrounding an olivaceous green mass of conidia. Conidiophores arising from basal stroma, macronematous, mononematous, septate, unbranched or branched, straight or flexuous, thin-walled, subcylindrical, olivaceous brown, verrucose, consisting of a stipe and a penicillately branched conidiogenous apparatus consisting of a whorl of primary branches, each terminating in number of conidiogenous cells. Conidiogenous cells enteroblastic, monophialidic, integrated, terminal, clavate to subcylindrical, hyaline to pale olivaceous brown, smooth, often verruculose at base, with a conspicuous collarette. Conidia solitary, fusiform to ellipsoidal, aseptate, initially hyaline, becoming olivaceous brown to dark brown, longitudinally striated at surface, with a distinct dark basal hilum.

Type species.

Nigrosynnema guangdongense C.F. Liao, K.D. Hyde & Doilom

Notes.

Nigrosynnema resembles Striaticonidium in having fusiform to ellipsoidal conidia with longitudinal striations. However, it can be distinguished from Striaticonidium by having synnematous conidiomata, the absence of setae on the sporodochia, as well as support from molecular data. The synnematous conidiomata of Nigrosynnema are subcylindrical, flexuous, narrower towards the apex of the stipe, and robust at the base. The sporodochia are devoid of setae. However, in Striaticonidium, they are cylindrical to pyriform, broadened towards the apex, and have sporodochia covered by setae (Lombard et al. 2016). The blastn search of NCBI GenBank revealed that two strains of Nigrosynnema, ZHKUCC 23-1014 and ZHKUCC 23-1015, have sequence similarities of 98.37%, 91.73%, 89.70%, 89.04%, and 82.03% to the type species of Striaticonidium (Stri. cinctum CBS 932.69, ex-type) in LSU, ITS, tub2, rpb2, and cmdA sequence data, respectively. However, tef1-α sequence data of Stri. cinctum CBS 932.69 (ex-type) is unavailable in the NCBI database.

Nigrosynnema resembles Virgatospora described by Finley (1967) in having synnematous conidiomata, phialidic conidiogenous cells, and striated conidia. However, olivaceous brown to black synnemata in Nigrosynnema are subcylindrical, robust at the base, and narrower towards the apex of the stipe. The conidia in Nigrosynnema are aseptate, fusiform to ellipsoidal, and different from the septate, slightly curved conidia with a protuberant hilum of the type species of Virgatospora, V. echinofibrosa. Nigrosynnema can be distinguished from its closely related genera, as shown in Table 2.

Table 2.

Morphological comparison of Nigrosynnema and its closely related genera.

Genera Synnematous conidiomata Sporodochial conidiomata Conidiogenous cells Conidia Reference
Shape Color Shape Color Shape Color Shape Color Number of septa
Nigrosynnema Subcylindrical, narrower towards the apex of the stipe with a robust base Olivaceous brown to black Irregular, with white mycelia surrounding an olivaceous green mass of conidia Olivaceous brown to black Enteroblastic, phialidic, monophialidic, subcylindrical Mostly hyaline, sometimes pale olivaceous brown in the lower portion Fusiform to ellipsoidal, longitudinally striated Olivaceous brown to dark brown Aseptate This study
Albosynnema Subcylindrical Hyaline - - Phialidic, cylindrical to subulate Hyaline Ellipsoidal to oblong Blackish brown to black 3-septate Morris (1967) and Bills et al. (1994)
Didymostilbe Cylindrical, slightly thinned downwards, apex in a globose-hemispherical cap White-gray - - - - Short oblong-fusoid Hyaline 0–1-septate Saccardo and Saccardo (1906)
Digitiseta - - Circular to ellipsoid Hyaline Penicillus biverticillate, phialides, cylindrical, finger-like, straight to slightly incurved inward the penicillus Hyaline Cylindrical to slightly asymmetrical Hyaline to pale greenish Aseptate Gordillo and Decock (2017)
Peethambara Cylindrical with a subglobose to oval head surmounted by conspicuous, slimy conidia White - - Phialide, mostly subcylindrical, sometimes wider in the middle than at either end Hyaline Ellipsoidal to limoniform, with mammiform basal and/or apical Hyaline to
subhyaline
1-septate Subramanian and Bhat (1978)
Striaticonidium Cylindrical to pyriform, broadening towards the apex Marginal hyphae of synnemata olivaceous green Oval to elongate or irregular with a white to grey setose fringe surrounding an olivaceous green to dark green slimy mass of conidia Olivaceous green to mouse grey Phialidic, clavate to cylindrical to subcylindrical Hyaline Fusiform to ellipsoidal, longitudinally striated Olivaceous green to brown Aseptate Lombard et al. (2016)
Virgatospora Cylindrical throughout the greater part, somewhat expanded at the apex and base White or yellow at the base, yellow-black or blackish black at the apex - - - - Campanulate, cylindrical, or allantoid to fusiform Pale, olive to fuscous Mature 3-(sometimes 2-or 4)-septate Finley (1967)

The phylogenetic analyses supported that our two strains (ZHKUCC 23-1014 and ZHKUCC 23-1015) formed a distinct clade from other morphologically closely related taxa and constituted a well-supported clade related to Digitiseta with 94% ML and 1.00 BYPP statistical support. The main distinguishing morphological characteristic between the two genera is the absence of hypha-like setoid structures in Nigrosynnema, whereas Digitiseta, introduced by Gordillo and Decock (2017), has short apical branches and digitated hypha-like setoids. Additionally, the conidial shape is fusiform to ellipsoidal in Nigrosynnema, while they are cylindrical in Digitiseta.

Based on morphological and molecular evidence, we introduce a novel asexual genus, Nigrosynnema, characterized by olivaceous to black synnematous or sporodochial conidiomata that produce phialidic, aseptate conidia in black, slimy, glistening masses or heads. The conidia are fusiform to ellipsoidal, aseptate, longitudinally striated, and olivaceous brown to dark brown.

Nigrosynnema guangdongense C.F. Liao, K.D. Hyde & Doilom, sp. nov.

Figs 3, 4

Etymology.

The epithet “guangdongense” refers to the locality, Guangdong Province, China, where the holotype was collected.

Holotype.

MHZU 23-0255.

Description.

Saprobic on dead stem of Wurfbainia villosa. Sexual morph: undetermined. Asexual morph: Synnemata on the natural substrate, 370–570 × 20–50 µm (av. 470 × 33 μm, n = 20), erect, unbranched, subcylindrical, with a robust base, narrowed towards fertile apex, olivaceous brown to black, straight or curved in the upper portion, consisting of parallelly arranged, tightly compacted conidiophores. Conidiophores 2–4 µm wide, subcylindrical, branched, olivaceous brown, slightly tapering towards the apex, verrucose. Conidiogenous cells 10.5–32.5 × 1.5–3 µm (av. 22 × 2.5 μm, n = 30), enteroblastic, monophialidic, discrete, terminal, subcylindrical, mostly hyaline, sometimes pale olivaceous brown in the lower portion, mostly smooth-walled in above half, often verruculose at below half, with a conspicuous collarette. Conidia 10–12.5 × 3–4.5 µm (av. 11.5 × 4 μm, n = 30), solitary, slimy, fusiform to ellipsoidal, aseptate, longitudinally striated, olivaceous brown to dark brown, guttulate, obtuse at both ends, with a distinct dark basal hilum.

Figure 3. 

Nigrosynnema guangdongense (MHZU 23-0255, holotype) on natural substrate a–c synnemata on substrate d synnema e top of synnema f base of synnema g, h conidia i conidiogenous cells with conidia j germinated conidium k colonies on PDA (front and below). Scale bars: 500 µm (a); 200 µm (b); 100 µm (c, d); 20 µm (e, f); 10 µm (g–j).

Culture characteristics.

Colonies on PDA reaching 4.5–6.5 cm in two weeks at 28 ± 2 °C, medium dense, flat or effuse, diffuse, rough, circular, filiform with curled, large circle in the middle becoming a wave and extends outward, cream from above; cream from the reverse. The spores produced on PDA after three weeks. Conidiomata 220–300 × 15–20 µm, sporodochial, superficial, scattered, irregular, with white mycelia surrounding an olivaceous green mass of conidia, with or without covering the slimy mass of conidia, without setae. Conidiophores arising from the basal stroma, consisting of a stipe and a penicillately branched conidiogenous apparatus; stipes unbranched or rarely branched, hyaline, septate, smooth, 10–30 × 2.5–3.5 µm (av. 18 × 3.0 μm, n = 20), conidiogenous apparatus consisting of a whorl of 2–5 primary branches, each terminating in 2–5 conidiogenous cells; primary branches, 1, 2-septate, smooth, unbranched, 8–20 × 2–6 µm, secondary branches, aseptate, smooth, unbranched, 6–20 × 2–5 µm. Conidiogenous cells 10–20 × 2–4 µm (av. 14 × 2.5 μm, n = 30), phialidic, terminal, with a conspicuous collarette, clavate to cylindrical, hyaline, smooth. Conidia 7–10 × 3–5 µm (av. 8.5 × 3.5 μm, n = 30), acrogenous, longitudinally striated, fusiform to ellipsoidal, aseptate, initially hyaline, becoming olivaceous green when mature.

Figure 4. 

Nigrosynnema guangdongense (MHZU 23-0255) on PDA after three weeks a, b conidial masses on pda c–f conidiophores, conidiogenous cells with conidia g, h conidia. Scale bars: 10 µm (c–f); 5 µm (g, h).

Material examined.

China • Guangdong Province, Yangchun City, Yongning Town (22.256185°N, 111.609037°E, 270 m), on dead stems of Wurfbainia villosa (Lour.) Škorničk. & A.D. Poulsen. (Zingiberaceae), 10 April 2022, C.F. Liao & Y.H. Yang, YAM19 (MHZU 23-0255, holotype) • ex-type, ZHKUCC 23-1014 • ibid., living culture ZHKUCC 23-1015.

Notes.

Nigrosynnema guangdongense is established here as the type species. It is similar to Virgatospora natarajanensis described by D’Souza et al. (2002) in having synnematous conidiomata, with fusiform, aseptate, and striated conidia. However, N. guangdongense has verrucose, olivaceous, brown conidiophores, conidia with obtuse apices, and a distinct dark basal hilum, whereas V. natarajanensis has distinctly echinulate, subhyaline conidiophores that are narrower and smooth towards the apex, and conidia are rounded at both ends. Additionally, the conidiogenous cells of V. natarajanensis are occasionally found in the subterminal position, while they have not been observed in N. guangdongense. Nigrosynnema guangdongense has longer conidiogenous cells (10.5–32.5 × 1.5–3 µm) compared to V. natarajanensis (18–25 × 1.5–3.5 μm).

Nigrosynnema guangdongense and Virgatospora echinofibrosa (the type species of Virgatospora) (Finley 1967) are similar in having synnematous conidiomata and striate, phialidic conidia. However, N. guangdongense has shorter synnemata (370–570 × 20–50 µm) than V. echinofibrosa (up to 1500 µm). Synnemata of N. guangdongense are robust at the base, narrower towards the apex of the stipe, and olivaceous brown to black, whereas they are simple or branched, sometimes proliferated, cylindrical throughout the greater part, somewhat broader at the apex and base, white or yellow at the base, yellow-black or blackish black at the apex in V. echinofibrosa.

Additionally, N. guangdongense has smaller (10–12.5 × 3–4.5), fusiform, aseptate conidia compared to ellipsoidal to limoniform, 3-(sometimes 2- or 4)-septate conidia (39–50 × 9–15 µm) of V. echinofibrosa.

Nigrosynnema natarajanensis (D’Souza, S.K. Singh & Bhat) C.F. Liao, K.D. Hyde Doilom & Bhat, comb. nov.

Basionym.

Virgatospora natarajanensis D’Souza, S.K. Singh & Bhat, Mycotaxon 82: 141 (2002).

Holotype.

IMI 386680.

Type information.

India • Middle Andaman Island, on dead leaves of Calamus thwaitesii, 15 December 2000, Rajiv Kumar, IMI386680 (holotype).

Description.

See D’Souza et al. (2002) on page 141.

Illustration.

See D’Souza et al. (2002) on page 140, Fig. 4a–d.

Notes.

D’Souza et al. (2002) introduced Virgatospora natarajanensis based on the morphology and found it as a saprobe on dead leaves of Calamus thwaitesii from Middle Andaman Island, India. Although the DNA sequence data of V. natarajanensis is not available in NCBI, morphologically, it fits well within the generic concept of Nigrosynnema due to its synnematous conidiomata, phialidic conidiogenous cells, ellipsoidal to fusiform, aseptate conidia (amerosporous) with distinct longitudinal striations. The conidia in V. echinofibrosa, the type species of Virgatospora, are ellipsoidal to limoniform and 3-(sometimes 2- or 4)-septate (phragmosporous). Based on the morphological similarities between V. natarajanensis and N. guangdongense (the type species of Nigrosynnema), as well as support from molecular phylogenetic analyses of the type species of Virgatospora, we synonymize V. natarajanensis under Nigrosynnema as N. natarajanensis. However, it is desirable to obtain DNA sequence data from both the type specimen of V. natarajanensis and fresh collections to further support our proposal.

Sirastachys guangdongensis C.F. Liao, K.D. Hyde & Doilom, sp. nov.

Fig. 5

Etymology.

The epithet “guangdongensis” refers to the locality, Guangdong Province, China, where the holotype was collected.

Holotype.

MHZU 23-0250.

Description.

Saprobic on dead stem of Agave sisalana. Sexual morph: undetermined. Asexual morph: Colonies superficial on host substrate, erect, gregarious, visible as numerous black conidial masses. Conidiophores 105–170 × 3.5–7 µm (av. 140 × 5.5 μm, n = 30), macronematous, mononematous, erect, simple, unbranched, straight or slightly flexuous, subcylindrical, hyaline, 1–5-septate, not constricted at septa, smooth-walled, or slightly verrucose, thick-walled, bearing 4–8 conidiogenous cells on the tip. Conidiogenous cells 6.5–12.5 × 4–5 µm (av. 10 × 4 μm, n = 30), enteroblastic, monophialidic, discrete, determinate, terminal, elongate doliiform to reniform, subhyaline to brown, smooth-walled, with a conspicuous collarette. Conidia 5–6 × 4–5 µm (av. 5.5 × 4 μm, n = 30), acrogenous, aggregating in slimy masses, obovoid, with a prominent hilum, aseptate, brown, pale olivaceous brown, black, smooth-walled.

Figure 5. 

Sirastachys guangdongensis (MHZU 23-0250, holotype) a–c colonies on the surface substrate d, e conidiophores, conidiogenous cells with conidia f, g conidiogenous cells with conidia h conidia. Scale bars: 50 µm (d, e); 10 µm (f, g); 5 µm (h).

Culture characteristics.

Colonies on PDA reaching 5.5–6.0 cm in two weeks at 28 ± 2 °C, medium dense, flat, circular, cream from above; pale luteous from the reverse, with no pigmentation.

Material examined.

China • Guangdong Province, Guangzhou City, Zhongkai University of Agriculture and Engineering (23.10643°N, 113.28240°E, 20 m), on dead leaf of Agave sisalana Perr. ex Engelm. (Agavaceae), 17 November 2021, C.F. Liao & Y.H. Yang, JM02 (MHZU 23-0250, holotype) • ex-type, ZHKUCC 23-1003 • ibid., living culture ZHKUCC 23-1004.

Notes.

Sirastachys guangdongensis resembles Si. pandicola and Si. Phaeospora that were described by Lombard et al. (2016). However, the former can be distinguished by the size of the conidiophores and conidia as well as other conidiophore characteristics. Sirastachys guangdongensis has longer conidiophores (105–170 µm) than those of Si. pandicola (55–75 µm) and Si. phaeospora (40–65 µm). Sirastachys guangdongensis has larger conidia (5–6 × 4–5 µm) than Si. pandicola (3–4 × 2–3 µm) and Si. phaeospora (4–5 × 2–3 µm). Conidiophores of Si. guangdongensis are 1–5-septate, while they are 1–3-septate in Si. pandicola and 1–2(–3)-septate in Si. phaeospora. Branched conidiophores are observed in Si. phaeospora (Lombard et al. 2016), while they are unbranched in Si. guangdongensis. The phylogenetic analyses supported Si. guangdongensis as a distinct species from other Sirastachys species and showed that Si. guangdongensis (ZHKUCC 23-1003 and ZHKUCC 23-1004) formed a distinct branch and sister to Si. phaeospora (ex-type CBS 100155) with 99% ML bootstrap support and 1.00 BYPP (Fig. 1). Based on distinct morphological and molecular evidence, we propose Sirastachys guangdongensis as a novel species.

Stachybotrys microsporus (B.L. Mathur & Sankhla) S.C. Jong & E.E. Davis [as ‘microspora’]

Fig. 6

Description.

Saprobic on dead leaf of Agave sisalana. Sexual morph: undetermined. Asexual morph: Colonies superficial on host substrate, gregarious, visible as numerous black conidial masses. Conidiophores 35–70 × 2.5–5 µm (av. 48 × 4 μm, n = 30), macronematous, mononematous, irregularly or sympodially branched, straight or flexuous, subcylindrical, hyaline, becoming pale olivaceous brown in the above half, 1–3-septate, not constricted at the septa, smooth-walled, slightly rough-walled in the subterminal region, thick-walled, bearing 3–9 conidiogenous cells on the tip. Conidiogenous cells 6–10 × 4–6 µm (av. 8 × 5 μm, n = 30), enteroblastic, monophialidic, discrete, determinate, terminal, obovoid, sub-hyaline to pale olivaceous brown, smooth-walled. Conidia 5–7 µm diam. (av. 6 μm, n = 30), aggregating in slimy masses, globose, subglobose, aseptate, olivaceous brown to black, rough-walled, verrucose.

Figure 6. 

Stachybotrys microsporus (MHZU 23-0252, new host record) a–c colonies on the surface substrate d, e conidiophores f–i conidiogenous cells j conidia k colonies on pda (front) l colony on pda (below) m mycelium, conidiophores, and conidiogenous cells with conidia n–p conidiogenous cells with conidia q conidia. Scale bars: 20 µm (d, e); 50 µm (f–j, m); 10 µm (n–q).

Culture characteristics.

Colonies on PDA reaching 2.5–3.0 cm in two weeks at 28 ± 2 °C, medium dense, raised, flat, floccose to fluffy, velvety, irregular edge, gold brown at the center, pale brown, with conidiophores forming on the surface of the medium, carrying slimy olivaceous green from above; brown to pale luteous from the reverse. The conidia producing on PDA after three weeks: Conidiophores 30–80 × 3.5–5.5 µm (av. 46 × 4 μm, n = 30), most similar with the above description, 0–2-septate, unbranched or branched, bearing 2–10 conidiogenous cells at the tip. Conidiogenous cells 9–17 × 4.5–7.5 µm (av. 12 × 5.5 μm, n = 30), most similar to those on natural substrate. Conidia 6.5–10 × 3–6.5 µm (av. 8 × 5 μm, n = 30), often aggregated as large, slimy, glistening, blackheads, initially hyaline to olivaceous green, oblong, obovoid to subglobose, becoming black-brown, globose, smooth to verruculose.

Material examined.

China • Guangdong Province, Guangzhou City, Zhongkai University of Agriculture and Engineering (23.10643°N, 113.28240°E, 20 m), on dead leaf of Agave sisalana Perr. ex Engelm. (Agavaceae), 17 November 2021, C.F. Liao & Y.H. Yang, SR09A (MHZU 23-0252, new host record) • living culture, ZHKUCC 23-1007 • ibid., living culture ZHKUCC 23-1008.

Known distribution.

• Canada, Cuba, India, Nigeria, and Pakistan (Ellis 1971; Jong and Davis 1976); • China (this study); Japan (Iwama et al. 2022); • New Guinea; Zaria (Jong and Davis 1976); • Thailand (Lin et al. 2016; Samarakoon et al. 2021); • Sudan (Lombard et al. 2016).

Known hosts/substrates.

Agave sisalana (this study), Arachishypogaea rhizosphere, soil (Jong and Davis 1976), Castanopsis cuspidata var. sieboldii (Iwama et al. 2022), dead plants, paper, seeds, and textiles (Ellis 1971), decaying shrubs, wood (Lin et al. 2016), Musa sp. (Samarakoon et al. 2021), soil in Mangifera field (Lombard et al. 2016).

Notes.

Stachybotrys microsporus (ZHKUCC 23-1007, ZHKUCC 23-1008) formed a subclade with the type and other strains of St. microsporus with 100% ML and 1.00 BYPP (Fig. 1). Our collection has similar morphs to St. microsporus described by Jong and Davis (1976), Lin et al. (2016), and Samarakoon et al. (2021) by having irregularly branched conidiophores with tapering apices, monophialidic, discrete conidiogenous cells, unicellular, globose, roughened, and black conidia. Stachybotrys microsporus has been reported from forest soil in New Guinea (Jong and Davis 1976), on decaying wood in Thailand (Jong and Davis 1976), and on dead leaf petiole of Musa sp. in Thailand (Samarakoon et al. 2021). We report St. microsporus here as a new host record on Agave sisalana in China.

Discussion

Species of Stachybotryaceae have primarily been collected from soil and dead plant tissues. For example, Albifimbria terrestris was isolated from soil in mopane woodlands in Namibia and unidentified dead hardwood in the USA, while Cymostachys fabispora was obtained from decaying leaf material in Cuba and Aloe ferox in Tanzania (Lombard et al. 2016). In China, most taxa in this family have been reported from the soil, including Stachybotrys pallescens, St. subcylindrospora, St. subreniformis, and St. subcylindrospora (Jiang and Zhang 2009; Li and Jiang 2011; Jie et al. 2012). However, some species were also found in diseased plants and dead plant tissues. Paramyrothecium roridum (formerly known as Myrothecium roridum) has been identified as a pathogen causing leaf spot on Abutilon megapotamicum and Zantedeschia aethiopica plants from China (Li et al. 2014; Ben et al. 2015). Myxospora aptrootii was isolated from leaf litter in Hong Kong, China (Lombard et al. 2016). In this study, Brevistachys wurfbainiae and Nigrosynnema guangdongense were isolated from dead stems of Wurfbainia villosa, while Sirastachys guangdongensis and Stachybotrys microsporus were obtained from dead leaves of Agave sisalana in Guangdong, China. The present study contributes to the taxonomic and phylogenetic study of Stachybotryaceae by introducing a novel genus and two new species, along with the documentation of one newly recorded species from China.

The new genus, Nigrosynnema, is phylogenetically related to but distinct from Digitiseta and Striaticonidium. These taxa are classified into distinct genera based on differences in their asexual morphs, as detailed in the notes under Nigrosynnema. Nigrosynnema is also similar to Peethambara in having synnematous, erect conidiomata, unbranched or branched, septate, smooth conidiophores with phialidic conidiogenous cells (Subramanian and Bhat 1978). However, Peethambara has elongate or elongate-fusiform or broad-fusiform, hyaline, thick-walled, 1-septate conidia in green slimy masses, which are mostly widest in the middle, sometimes above or below the middle, and with smoothly rounded mamilla at the base (Subramanian and Bhat 1978; Lombard et al. 2016). Furthermore, Nigrosynnema can be distinguished from other asexual genera in Stachybotryaceae by its black, subcylindrical synnema that tapers towards the apex (Table 2) and the support from robust phylogeny. Additionally, our study found that Nigrosynnema guangdongense, the type species of this novel genus, produced synnematous conidiomata on the natural host substrates and sporodochial conidiomata on PDA. Synnemata observed on the natural substrate are erect, with a robust base, subcylindrical, narrower towards the apex of the stipe, and olivaceous brown to black in color. Synnemata appear slender, straight, or curved in the upper portion and consist of bundles of parallelly arranged, tightly compacted conidiophores. On the other hand, sporodochial conidiomata appeared on PDA, producing superficially scattered irregular structures on pulvinate conidiophores and surrounded by white mycelia and crowned by an olivaceous green mass of conidia with or without a slimy covering.

This study proposes Sirastachys guangdongensis as a novel species in the family Stachybotryaceae, represented by the strains ZHKUCC 23-1003 and ZHKUCC 23-1004. It is noted that Lombard et al. (2016) designated CBS 100155 as the ex-type of Sirastachys phaeospora and identified additional strains (CBS 136167, CBS 136185, CPC 16092, CPC 16093, and CBS 253.75) as Si. phaeospora. However, their phylogenetic analyses did not support the formation of a well-defined monophyletic lineage for these additional strains with the ex-type. Although the materials examined included CBS 136167, CBS 136185, and CPC 16092, only ex-type (CBS100155) was used to illustrate the morphological characteristics of Si. phaeospora. Therefore, it is recommended to confirm the taxonomic identification of these additional strains and determine whether they are congeneric with the ex-type of Si. phaeospora. In this study, we accepted only CBS 100155 as an authentic strain of Si. phaeospora for inclusion in our phylogenetic tree, in which our new collections (ZHKUCC 23-1003 and ZHKUCC 23-1004) formed a distinct branch sister to Si. phaeospora (ex-type CBS100155) with 99% ML bootstrap support and 1.00 BYPP (Fig. 1). The morphological characteristics observed in our collection differ from those described for Si. phaeospora based on characteristics of conidiophores, as well as the size of conidiophores and conidia, as described in the notes under Si. guangdongensis.

The taxonomic placement and phylogenetic relationship of many species, such as Myrothecium atrocarneum, Stachybotrys asperulus, St. atrogriseus, St. atrus, St. clitoriae, and St. verrucosus in Stachybotryaceae, remain unclear due to a lack of DNA sequence data of ex-type strains and fresh collections. Furthermore, many species in Stachybotryaceae are limited to ITS and LSU sequence data. There is a scarcity of reliable phylogenetic markers (e.g., cmdA, rpb2, tef1-α, and tub2) to identify the phylogenetic status within Stachybotryaceae accurately. Future taxonomic studies in this family should incorporate multi-locus genes, such as cmdA, ITS, LSU, rpb2, tef1-α, and tub2, along with morphological characteristics and other polyphasic approaches (e.g., physiology and secondary metabolites), while also considering hosts and their distribution to enhance our understanding in this issue (Maharachchikumbura et al. 2021). Additionally, the specimen of the type species should be revisited, and epitypification is needed to confirm their taxonomic placement.

Acknowledgments

We would like to thank Dr. Shaun Pennycook (Landcare Research, New Zealand) for his invaluable contribution in reviewing the nomenclature. Mingkwan Doilom thanks the Science and Technology Bureau of Guangzhou City (grant numbers 2023A04J1426). We deeply appreciate Zhongkai University of Agriculture and Engineering for providing us with the essential research facilities. We would like to thank Mae Fah Luang University for the partial scholarship for the doctoral degree program. Kevin D. Hyde and Fatimah Al-Otibi extend their appreciation to the Researchers Supporting Project number (RSP2025R114), King Saud University, Riyadh, Saudi Arabia.

Additional information

Conflict of interest

The authors have declared that no competing interests exist.

Ethical statement

No ethical statement was reported.

Funding

This research was funded by the Science and Technology Bureau of Guangzhou City, grant numbers 2023A04J1426.

Author contributions

Conceptualization: KWTC, WD, MD, CL. Data curation: CL. Formal analysis: MD, CL. Funding acquisition: MD. Investigation: DJB, CL, MD, KDH. Methodology: CL. Project administration: KDH. Resources: YY, MD, CL. Software: KDH, KWTC, CL. Supervision: KWTC, KT, MD. Validation: MD. Visualization: DJB, MD, CL. Writing - original draft: MD, CL. Writing - review and editing: FAO, WD, KWTC, KT, CL, MD, DJB, YY.

Author ORCIDs

Chunfang Liao https://orcid.org/0000-0002-6309-1101

Mingkwan Doilom https://orcid.org/0000-0001-6167-3637

D. Jayarama Bhat https://orcid.org/0000-0002-3800-5910

Kandawatte Wedaralalage Thilini Chethana https://orcid.org/0000-0002-5816-9269

Khanobporn Tangtrakulwanich https://orcid.org/0009-0002-7081-618X

Yunhui Yang https://orcid.org/0000-0002-0326-1471

Fatimah Al-Otibi https://orcid.org/0000-0003-3629-5755

Kevin D. Hyde https://orcid.org/0000-0002-2191-0762

Wei Dong https://orcid.org/0000-0003-4991-1529

Data availability

All of the data that support the findings of this study are available in the main text.

References

  • Ben HY, Gao W, Qu HY, Chai AL, Shi YX, Xie XW, Li BJ (2015) New host record of Myrothecium roridum causing leaf spot on Abutilon megapotamicum from China. Journal of Phytopathology 164(7–8): 563–566. https://doi.org/10.1111/jph.12439
  • Bills FB, Rossman AY, Polishook JD (1994) Rediscovery of Albosynnema elegans and Solheimia costaspora. Sydowia 46: 1–10.
  • Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T (2009) trimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25(15): 1972–1973. https://doi.org/10.1093/bioinformatics/btp348
  • Corda ACJ (1837) Icones fungorum hucusque cognitorum 1: 1–32.
  • Crous PW, Shivas RG, Quaedvlieg WV, van der Bank M, Zhang Y, Summerell BA, Guarro J, Wingfield MJ, Wood AR, Alfenas AC, Braun U, Cano-Lira JF, García D, Marin-Felix Y, Alvarado P, Andrade JP, Armengol J, Assefa A, den Breeÿen A, Camele I, Cheewangkoon R, De Souza JT, Duong TA, Esteve-Raventós F, Fournier J, Frisullo S, García-Jiménez J, Gardiennet A, Gené J, Hernández-Restrepo M, Hirooka Y, Hospenthal DR, King A, Lechat C, Lombard L, Mang SM, Marbach PAS, Marincowitz S, Marin-Felix Y, Montaño-Mata NJ, Moreno G, Perez CA, Pérez Sierra AM, Robertson JL, Roux J, Rubio E, Schumacher RK, Stchigel AM, Sutton DA, Tan YP, Thompson EH, Vanderlinde E, Walker AK, Walker DM, Wickes BL, Wong PTW, Groenewald JZ (2014) Fungal Planet description sheets: 214–280. Persoonia 32(1): 184–306. https://doi.org/10.3767/003158514X682395
  • Crous PW, Schumacher RK, Wingfield MJ, Akulov A, Denman S, Roux J, Braun U, Burgess TI, Carnegie AJ, Váczy KZ, Guatimosim E, Schwartsburd PB, Barreto RW, Hernández-Restrepo M, Lombard L, Groenewald JZ (2018) New and Interesting Fungi. 1. Fungal Systematics and Evolution 1(1): 169–216. https://doi.org/10.3114/fuse.2018.01.08
  • D’Souza MA, Singh SK, Bhat DJ (2002) New conidial fungi from Andaman Islands, India. Mycotaxon 82: 133–143.
  • Doilom M, Dissanayake AJ, Wanasinghe DN, Boonmee S, Liu JK, Bhat DJ, Taylor JE, Bahkali AH, McKenzie EH, Hyde KD (2017) Microfungi on Tectona grandis (teak) in Northern Thailand. Fungal Diversity 82(1): 107–182. https://doi.org/10.1007/s13225-016-0368-7
  • Glass NL, Donaldson GC (1995) Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 61(4): 1323–1330. https://doi.org/10.1128/aem.61.4.1323-1330.1995
  • Gordillo A, Decock C (2017) Myrothecium-like (Ascomycota, Hypocreales) species from tropical areas: Digitiseta gen. nov. and additions to Inaequalispora and Parvothecium. Mycological Progress 17(1–2): 179–190. https://doi.org/10.1007/s11557-017-1302-4
  • Groenewald JZ, Nakashima C, Nishikawa J, Shin HD, Park JH, Jama AN, Groenewald M, Braun U, Crous PW (2013) Species concepts in Cercospora: Spotting the weeds among the roses. Studies in Mycology 75: 115–170. https://doi.org/10.3114/sim0012
  • Hall TA (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98.
  • Hernandez-Restrepo M, Schumacher RK, Wingfield MJ, Ahmad I, Cai L, Duong TA, Edwards J, Gene J, Groenewald JZ, Jabeen S, Khalid AN, Lombard L, Madrid H, Marin-Felix Y, Marincowitz S, Miller AN, Rajeshkumar KC, Rashid A, Sarwar S, Stchigel AM, Taylor PWJ, Zhou N, Crous PW (2016) Fungal Systematics and Evolution: FUSE 2. Sydowia 68: 193–230. https://doi.org/10.12905/0380.sydowia68-2016-0193
  • Hyde KD, Norphanphoun C, Abreu VP, Bazzicalupo A, Thilini Chethana KW, Clericuzio M, Dayarathne MC, Dissanayake AJ, Ekanayaka AH, He MQ, Hongsanan S, Huang SK, Jayasiri SC, Jayawardena RS, Karunarathna A, Konta S, Kušan L, Lee H, Li JF, Lin CG, Liu NG, Lu YZ, Luo ZL, Manawasinghe IS, Mapook A, Perera RH, Phookamsak R, Phukhamsakda C, Siedlecki L, Soares AM, Tennakoon DS, Tian Q, Tibpromma S, Wanasinghe DN, Xiao YP, Yang J, Zeng XY, Abdel-Aziz A, Li FA, Senanayake WJ, Shang IC, Daranagama QJ, de Silva DA, Thambugala NI, Abdel-Wahab KM, Bahkali MA, Berbee AH, Boonmee ML, Bhat S, Bulgakov DJ, Buyck TS, Camporesi B, Castañeda-Ruiz E, Chomnunti RF, Doilom P, Dovana M, Gibertoni F, Jadan TB, Jeewon M, Jones R, Kang EBG, Karunarathna JC, Lim SC, Liu YW, Liu JK, Saisamorn Lumyong ZY, Maharachchikumbura HLP, Matočec SSN, Mc N, Kenzie EHC, Mešić A, Miller D, Pawłowska J, Pereira OL, Promputtha I, Romero AI, Ryvarden L, Su HY, Suetrong S, Tkalčec Z, Vizzini Z, Wen TC, Wisitrassameewong K, Wrzosek M, Xu JC, Zhao Q, Zhao RL, Mortimer PE (2017) Fungal diversity notes 603–708: Taxonomic and phylogenetic notes on genera and species. Fungal Diversity 87(1): 1–235. https://doi.org/10.1007/s13225-017-0391-3
  • Hyde KD, Norphanphoun C, Maharachchikumbura SSN, Bhat DJ, Jones EBG, Bundhun D, Chen YJ, Bao DF, Boonmee S, Calabon MS, Chaiwan N, Chethana KWT, Dai DQ, Dayarathne MC, Devadatha B, Dissanayake AJ, Dissanayake LS, Doilom M, Dong W, Fan XL, Goonasekara ID, Hongsanan S, Huang SK, Jayawardena RS, Jeewon R, Karunarathna A, Konta S, Kumar V, Lin CG, Liu JK, Liu NG, Luangsa-Ard J, Lumyong S, Luo ZL, Marasinghe DS, McKenzie EHC, Niego AGT, Niranjan M, Perera RH, Phukhamsakda C, Rathnayaka AR, Samarakoon MC, Samarakoon SMBC, Sarma VV, Senanayake IC, Shang QJ, Stadler M, Tibpromma S, Wanasinghe DN, Wei DP, Wijayawardene NN, Xiao YP, Yang J, Zeng XY, Zhang SN, Xiang MM (2020) Refined families of Sordariomycetes. Mycosphere 11(1): 305–1059. https://doi.org/10.5943/mycosphere/11/1/7
  • Hyde KD, Noorabadi MT, Thiyagaraja V, He MQ, Johnston PR, Wijesinghe SN, Armand A, Biketova AY, Chethana KWT, Erdoğdu M, Ge ZW, Groenewald JZ, Hongsanan S, Kušan I, Leontyev DV, Li DW, Lin CG, Liu NG, Maharachchikumbura SSN, Matočec N, May TW, McKenzie EHC, Mešić A, Perera RH, Phukhamsakda C, Piątek M, Samarakoon MC, Selcuk F, Senanayake IC, Tanney JB, Tian Q, Vizzini A, Wanasinghe DN, Wannasawang N, Wijayawardene NN, Zhao RL, Abdel-Wahab MA, Abdollahzadeh J et al. (2024) The 2024 Outline of Fungi and fungus-like taxa. Mycosphere 15: 5146–6239. https://doi.org/10.5943/mycosphere/15/1/25
  • Iwama R, Sasano Y, Hiramatsu T, Otake S, Suzuki E, Hasumi K (2022) Amine-Regulated pri-SMTP oxidation in SMTP biosynthesis in Stachybotrys: Possible implication in nitrogen acquisition. Journal of Fungi 8(9): 975. https://doi.org/10.3390/jof8090975
  • Jayasiri SC, Hyde KD, Ariyawansa HA, Bhat DJ, Buyck B, Cai L, Dai YC, Abd-Elsalam KA, Ertz D, Hidayat I, Jeewon R, Jones EBG, Bahkali AH, Karunarathna SC, Liu JKJ, Luangsaard J, Lumbsch H, Maharachchikumbura T, Mc SSN, Kenzie EHC, Moncalvo JM, Ghobad-Nejhad M, Nilsson H, Pang KL, Pereira OL, Phillips AJL, Raspé O, Rollins AW, Romero AI, Etayo J, Selçuk F, Stephenson SL, Suetrong S, Taylor JE, Tsui CKM, Vizzini A, Abdel-Wahab MA, Wen TC, Boonmee S, Dai DQ, Daranagama DA, Dissanayake AJ, Ekanayaka AH, Fryar SC, Hongsanan S, Jayawardena RS, Li WJ, Perera RH, Phookamsak R, de Silva NL, Thambugala KM, Tian Q, Wijayawardene NN, Zhao RL, Zhao Q, Kang JC, Promputtha I (2015) The faces of fungi database: Fungal names linked with morphology, phylogeny and human impacts. Fungal Diversity 74(1): 3–18. https://doi.org/10.1007/s13225-015-0351-8
  • Jeewon R, Hyde KD (2016) Establishing species boundaries and new taxa among fungi: Recommendations to resolve taxonomic ambiguities. Mycosphere 7(11): 1669–1677. https://doi.org/10.5943/mycosphere/7/11/4
  • Jiang YL, Zhang TY (2009) Notes on soil dematiaceous hyphomycetes from Sichuan Province, China. Mycosystema 28: 644–647.
  • Jie CY, Geng K, Jiang YL, Xu JJ, Hyde KD, McKenzie EH, Zhang TY, Bahkali AH, Li DW, Wang Y (2012) Stachybotrys from soil in China, identified by morphology and molecular phylogeny. Mycological Progress 12(4): 693–698. https://doi.org/10.1007/s11557-012-0878-y
  • Jong SC, Davis EE (1976) Contributions to the knowledge of Stachybotrys and Memnoniella in culture. Mycotaxon 3: 409–485.
  • Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution 30(4): 772–780. https://doi.org/10.1093/molbev/mst010
  • Liao C, Senanayake IC, Dong W, Thilini Chethana KW, Tangtrakulwanich K, Zhang Y, Doilom M (2023) Taxonomic and phylogenetic updates on Apiospora: Introducing four new species from Wurfbainia villosa and grasses in China. Journal of Fungi 9(11): 1087. https://doi.org/10.3390/jof9111087
  • Lin CG, McKenzie EHC, Bhat DJ, Ran SF, Chen Y, Hyde KD, Li DW, Wang Y (2016) Stachybotrys-like taxa from karst areas and a checklist of stachybotrys-like species from Thailand. Mycosphere 7(9): 1273–1291. https://doi.org/10.5943/mycosphere/7/9/3
  • Liu NG, Hyde KD, Sun YR, Bhat DJ, Jones EBG, Jumpathong J, Lin CG, Lu YZ, Yang J, Liu LL, Liu ZY, Liu JK (2024) Notes, outline, taxonomy and phylogeny of brown-spored hyphomycetes. Fungal Diversity. https://doi.org/10.1007/s13225-024-00539-6
  • Lombard L, Houbraken J, Decock C, Samson RA, Meijer M, Réblová M, Groenewald JZ, Crous PW (2016) Generic hyper-diversity in Stachybotriaceae. Persoonia 36(1): 156–246. https://doi.org/10.3767/003158516X691582
  • Maharachchikumbura SSN, Chen Y, Ariyawansa HA, Hyde KD, Haelewaters D, Perera RH, Samarakoon MC, Wanasinghe DN, Bustamante DE, Liu JK, Lawrence DP, Cheewangkoon R, Stadler M (2021) Integrative approaches for species delimitation in Ascomycota. Fungal Diversity 109(1): 155–179. https://doi.org/10.1007/s13225-021-00486-6
  • Mapook A, Hyde KD, McKenzie EHC, Jones EBG, Bhat DJ, Jeewon R, Stadler M, Samarakoon MC, Malaithong M, Tanunchai B, Buscot F, Wubet T, Purahong W (2020) Taxonomic and phylogenetic contributions to fungi associated with the invasive weed Chromolaena odorata (Siam weed). Fungal Diversity 101(1): 1–175. https://doi.org/10.1007/s13225-020-00444-8
  • Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Gateway Computing Environments Workshop (GCE), San Diego Supercomput., 1–8. https://doi.org/10.1109/GCE.2010.5676129
  • O’Donnell K, Kistler HC, Cigelnik E, Ploetz RC (1998) Multiple evolutionary origins of the fungus causing Panama disease of banana: Concordant evidence from nuclear and mitochondrial gene genealogies. Proceedings of the National Academy of Sciences of the United States of America 95(5): 2044–2049. https://doi.org/10.1073/pnas.95.5.2044
  • Rathnayaka AR, Tennakoon DS, Jones EBG, Wanasinghe DN, Bhat DJ, Priyashantha AH, Stephenson SL, Tibpromma S, Karunarathna SC (2024) Significance of precise documentation of hosts and geospatial data of fungal collections, with an emphasis on plant-associated fungi. New Zealand Journal of Botany 31: 1–28. https://doi.org/10.1080/0028825X.2024.2381734
  • Saccardo PA, Saccardo DA (1906) Sylloge Fungorum 18: 1–839. [Italy, Padua; PA Saccardo.]
  • Samarakoon BC, Wanasinghe DN, Phookamsak R, Bhat DJ, Chomnunti P, Karunarathna SC, Lumyong S (2021) Stachybotrys musae sp. nov., S. microsporus, and Memnoniella levispora (Stachybotryaceae, Hypocreales) found on bananas in China and Thailand. Life 11(4): 323. https://doi.org/10.3390/life11040323
  • Senanayake IC, Rathnayaka AR, Marasinghe DS, Calabon MS, Gentekaki E, Lee HB, Hurdeal VG, Pem D, Dissanayake LS, Wijesinghe SN, Bundhun D, Nguyen TT, Goonasekara ID, Abeywickrama PD, Bhunjun CS, Jayawardena RS, Wanasinghe DN, Jeewon R, Bhat DJ, Xiang MM (2020) Morphological approaches in studying fungi: Collection, examination, isolation, sporulation and preservation. Mycosphere 11(1): 2678–2754. https://doi.org/10.5943/mycosphere/11/1/20
  • Subramanian CV, Bhat DJ (1978) Putagraivam, a new genus of the Hyphomycetes. Proceedings of the Indian Academy of Sciences. Section B, Biological Sciences 87(5): 99–104. https://doi.org/10.1007/BF03046958
  • Tibpromma S, Hyde KD, McKenzie EHC, Bhat DJ, Phillips AJ, Wanasinghe DN, Samarakoon MC, Jayawardena RS, Dissanayake AJ, Tennakoon DS, Doilom M, Phookamsak R, Tang AMC, Xu JC, Mortimer PE, Promputtha I, Maharachchikumbura SSN, Khan S, Karunarathna SC (2018) Fungal diversity notes 840–928: Micro-fungi associated with Pandanaceae. Fungal Diversity 93(1): 1–160. https://doi.org/10.1007/s13225-018-0408-6
  • Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172(8): 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
  • Von Höhnel FV (1924) Studien über Hyphomyzeten. Zentralblatt für Bakteriologie und Parasitenkunde Abteilung 2: 1–26.
  • Wang Y, Hyde KD, McKenzie EHC, Jiang YL, Li DW, Zhao DG (2015) Overview of Stachybotrys (Memnoniella) and current species status. Fungal Diversity 71(1): 17–83. https://doi.org/10.1007/s13225-014-0319-0
  • White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (Eds) PCR protocols: a guide to methods and applications, Academic Press, New York, 15–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
  • Wijayawardene NN, Hyde KD, Dai DQ, Sánchez-García M, Goto BT, Saxena RK, Erdoğdu M, Selçuk F, Rajeshkumar KC, Aptroot A, Błaszkowski J, Boonyuen N, da Silva GA, de Souza FA, Dong W, Ertz D, Haelewaters D, , Jones EBG, Karunarathna SC, Kirk PM, Kukwa M, Kumla J, Leontyev DV, Lumbsch HT, Maharachchikumbura SSN, Marguno F, Martínez-Rodríguez P, Mešić A, Monteiro JS, Oehl F, Pawłowska J, Pem D, Pfliegler WP, Phillips AJL, Pošta A, He MQ, Li JX, Raza M, Sruthi OP, Suetrong S, Suwannarach N, Tedersoo L, Thiyagaraja V, Tibpromma S, Tkalčec Z, Tokarev YS, Wanasinghe DN, Wijesundara DSA, Wimalaseana SDMK, Madrid H, Zhang GQ, Gao Y, Sánchez-Castro I, Tang LZ, Stadler M, Yurkov A, Thines M (2022) Outline of Fungi and fungus-like taxa – 2021. Mycosphere 13: 53–453. https://doi.org/10.5943/mycosphere/13/1/2
login to comment