Research Article |
Corresponding author: Changlin Zhao ( fungichanglinz@163.com ) Academic editor: Rui-Lin Zhao
© 2024 Qianquan Jiang, Zhengli Kang, Xubo Wang, Changlin Zhao.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Jiang Q, Kang Z, Wang X, Zhao C (2024) Molecular phylogeny and morphology reveal three new plant pathogenic fungi species (Septobasidiales, Basidiomycota) from China. MycoKeys 111: 229-248. https://doi.org/10.3897/mycokeys.111.125933
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Three new fungal species, Septobasidium macrobasidium, S. puerense and S. wuliangshanense, are proposed based on a combination of the morphological features and molecular evidence. The taxon S. macrobasidium is characterized by the coriaceous basidiomata with a cream surface, cylindrical basidia, straight, 4-celled, subglobose or ovoid probasidia and thin-walled, narrowly cylindrical basidiospores with septa, measuring as 7–9 × 3.5–4.5 µm, the haustoria consisting of irregularly coiled hyphae; in addition, this fungus was found associated with the insect of Diaspididae. The species S. puerense is characterised by resupinate coriaceous basidiomata with a cinnamon brown to chestnut brown surface, cylindrical or slightly irregular basidia, 2-3-celled, slightly curved, subglobose to pyriform probasidia, probasidia cell persistent after the formation of the basidia and the haustoria with two types consisting of irregularly coiled hyphae and spindle-shape. The fungus was found associated with the insect species Pseudaulacaspis pentagona. The species S. wuliangshanense is characterised by the coriaceous basidiomata with a slightly brown surface, cylindrical or slightly irregular basidia, 2-3-celled, straight or slightly curved, pyriform, subglobose or ovoid and probasidia, haustoria consisting of irregularly coiled hyphae, associated with the insect genus Aulacaspis. Sequences of internal transcribed spacer region (ITS) were analysed maximum likelihood, maximum parsimony and Bayesian inference methods. The new species S. macrobasidium was clustered with S. maesae. Furthermore, S. puerense was retrieved as a sister to S. carestianum. The phylogenetic tree, inferred from the ITS sequences, highlighted that S. wuliangshanense was the sister to S. aquilariae with strong supports. Application of PHI test to the ITS tree-locus sequences revealed no recombination level within phylogenetically related species.
Forest disease, phylogenetic analyses, taxonomy, wood-inhabiting fungi, Yunnan Province
Fungi are a diverse, monophyletic group of eukaryotes and these organisms show immense ecological and economic impacts for playing an important role in the ecosystems as diverse as soil, trees, with hidden layers within their substrate (
Mutualistic and parasitic symbioses between fungi and plants are widely acknowledged to have profound influences on the evolution and ecology of terrestrial life, but less well-known are the symbioses between fungi and insects (
Basidiomycete fungi have evolved many symbiotic associations with plants and animals, but fungi in the order Septobasidiales are the only large group of basidiomycetes that are obligately parasitic on insects. Understanding the evolution of insect parasitism and switches from plant parasitism in the Basidiomycota requires a phylogeny to place the order Septobasidiales within the Pucciniomycotina and to determine whether the different forms of insect parasitism in the order Septobasidiales and Septobasidium Pat. have a single origin. Septobasidium is a type of fungi that has a mutualistic relationship with insects. Although Septobasidium sterilize the individuals they parasitize, the fungi may protect uninfected individuals and thereby benefit the population of scale insects (
Septobasidium (Septobasidiaceae, Septobasidiales), erected by
As with most basidiomycetes, basidia are produced so that they project toward the ground. Thus, the resupinate basidiomata often are found on the lower sides of branches. They occur on living rather than dead plant parts and away from the extreme tips of branches which distinguishes them from some resupinate species of Aphyllophorales (
Molecular systematics has played a powerful role in inferring phylogenies within fungal groups since the early 1990s (
During investigations into the wood-inhabiting fungi in Pu’er, Yunnan of China, samples representing three additional species belonging to genus Septobasidium were collected. Three new Septobasidium taxa were found that could not be assigned to any described species. To clarify the placement and relationships of these specimens, we carried out a phylogenetic and taxonomic study based on the ITS sequences. A description, illustrations, and phylogenetic analysis results of the new species are provided.
Fresh fruiting bodies of fungi growing on angiosperm branches were collected from Pu’er of Yunnan Province, P.R. China. The samples were photographed in situ and fresh macroscopic details were recorded. Photographs were recorded using a Jianeng 80D camera (Tokyo, Japan). All of the photos were stacked and merged using Helicon Focus Pro 7.7.5 software. Specimens were dried in an electric food dehydrator at 40 °C and then sealed and stored in an envelope bag and deposited in the herbarium of the Southwest Forestry University (SWFC), Kunming, Yunnan Province, P.R. China.
Macromorphological descriptions are based on field notes and photos captured in the field and lab. Color terminology follows
Genomic DNA was obtained from dried specimens using the EZNA HP Fungal DNA Kit, according to the manufacturer’s instructions with some modifications. A small piece of dried fungal specimen (about 30 mg) was ground to powder with liquid nitrogen. The powder was transferred to a 1.5 ml centrifuge tube, suspended in 0.4 ml of lysis buffer and incubated in a 65 °C water bath for 60 min. After that, 0.4 ml phenol-chloroform (24: 1) was added to each tube and the suspension was shaken vigorously. After centrifugation at 13,000 rpm for 5 min, 0.3 ml supernatant was transferred to a new tube and mixed with 0.45 ml binding buffer. The mixture was then transferred to an adsorbing column (AC) for centrifugation at 13,000 rpm for 0.5 min. Then, 0.5 ml inhibitor removal fluid was added in AC for a centrifugation at 12,000 rpm for 0.5 min. After washing twice with 0.5 ml washing buffer, the AC was transferred to a clean centrifuge tube and 100 ml elution buffer was added to the middle of adsorbed film to elute the genomic DNA. ITS region was amplified with primer pairs ITS5 and ITS4 (
List of species, specimens and GenBank accession numbers of sequences used in this study. [* Indicates type materials].
Species | Specimen No. | GenBank accession No. | Preference |
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ITS | |||
Helicobasidium mompa | DAH h1 | DQ241472 |
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Pachnocybe ferruginea | DAH pf1 | DQ241473 |
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Septobasidium alni | DAH FP3 | DQ241441 |
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S. aquilariae | CLZhao 6610 | MK804520 |
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S. aquilariae | CLZhao 6611 | MK804521 |
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S. aquilariae | CLZhao 6612 | MK804522 |
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S. aquilariae | CLZhao 6613 | MK804523 |
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S. aquilariae | CLZhao 6614 | MK804524 |
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S. arachnoideum | DAH 025 | DQ241443 |
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S. bogoriense | 998434 | HM209414 |
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S. broussonetiae | 998436 | HM209416 | Unpublished |
S. burtii | DAH 062 | DQ241444 |
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S. canescens | DAH 323 | DQ241446 |
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S. carestianum | DJM 644 | DQ241448 |
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S. castaneum | DAH 052 | DQ241447 |
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S. cavarae | DJM FP1 | DQ241445 |
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S. fumigatum | DAH 005 | DQ241451 |
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S. gomezii | DAH 031 | DQ241462 |
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S. grandisporum | DAH 065 | DQ241453 |
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S. griseum | DAH 016 | DQ241454 |
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S. hainanense | 998437 | HM209417 |
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S. kameii | 998432 | HM209412 |
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S. macrobasidium | CLZhao 9624* | PP532758 | Present study |
S. macrobasidium | CLZhao 9658 | PP532759 | Present study |
S. maesae | 998433 | HM209413 | Unpublished |
S. marianiae | LJF 7006 | MK809161 |
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S. marianiae | DAH 283b | DQ241456 |
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S. michelianum | DAH FP5 | DQ241457 |
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S. pallidum | 998435 | HM209415 | Unpublished |
S. pilosum | DAH 020 | DQ241458 |
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S. pinicola | DAH 013 | DQ241459 |
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S. pseudopedicellatum | DAH 044 | DQ241460 |
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S. puerense | CLZhao 9430* | PP532760 | Present study |
S. puerense | CLZhao 4298 | PP532761 | Present study |
S. ramorum | DAH 045a | DQ241450 |
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S. septobasidioides | DAH 032 | DQ241461 |
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S. sinuosum | DAH 036 | DQ241464 |
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S. taxodii | DAH 194C | DQ241466 |
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S. velutinum | DAH 024 | DQ241467 |
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S. westonii | DAH FP2001 | DQ241468 |
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S. wilsonianum | DAH 037 | DQ241469 |
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S. wuliangshanense | CLZhao 5809* | PP532756 | Present study |
S. wuliangshanense | CLZhao 3666 | PP532757 | Present study |
The sequences were aligned in MAFFT version 7 using the G-INS-i strategy (
Maximum parsimony strict consensus tree illustrating the phylogeny of the three new species and related species in Septobasidium. Branches are labelled with maximum likelihood bootstrap values ≥ 70%, parsimony bootstrap values ≥ 50% and Bayesian posterior probabilities ≥ 0.95, respectively.
Maximum parsimony (MP), maximum likelihood (ML) and Bayesian Inference (BI) analyses were applied to the three combined datasets. The phylogenetic analysis method was adopted by previous study (
MrModeltest 2.3 (
The Genealogical concordance phylogenetic species recognition analysis (GCPSR) is a tool used to check significant recombinant events. The data were analysed using SplitsTree 4 with the pairwise homoplasy Фw, PHI test to determine the recombination level within closely related species (
The dataset based on ITS (Fig.
The phylogenetic tree (Fig.
Application of PHI test to the ITS tree-locus sequences revealed no recombination level within phylogenetically related species. The test results of ITS sequence dataset show Φw = 0.5697 (Φw > 0.05) no recombination is present in the new species Septobasidium wuliangshanense with S. aquilariae, S. cavarae Bres. and S. pseudopedicellatum Burt (Fig.
Split graphs showing the results of PHI test for the ITS data of Septobasidium wuliangshanense and closely related taxa using LogDet transformation and splits decomposition. PHI test results Φw ≤ 0.05 indicate that there is significant recombination within the dataset. New taxa are in red while closely related species to new species are in other colours.
China • Yunnan Province, Pu’er, Jingdong County, Wuliangshan National Nature Reserve, 24°29'17"N, 100°40'27"E, altitude: 1800 m a.s.l., on the living tree of angiosperm, leg. C.L. Zhao, 6 January 2019, CLZhao 9624 (SWFC).
Differs from other Septobasidium species by the coriaceous basidiomata with a cream surface, cylindrical basidia (48.5–83 × 6.5–13 µm), and thin-walled, narrowly cylindrical basidiospores with septa, measuring as 7–9 × 3.5–4.5 µm.
Macrobasidium (Lat.): refers to the larger basidia of the type specimen.
Basidiomata perennial, resupinate, easy to separate from substrate, coriaceous upon drying, up to 9 cm long, 5 cm wide, 2 mm thick. Hymenial surface smooth, slightly cream when fresh, cream upon drying. Sterile margin narrow, white to cream, up to 0.5 mm.
Hyphal system monomitic, generative hyphae with simple septa, pale brown, thick-walled, frequently branched, interwoven. In section 850–1850 µm thick; subiculum pale brown, 30–80 µm thick; pillars brown, 350–550 µm high, 85–200 µm wide, hyphae of pillars 2–5 µm thick, hyaline or brown, forming 2–3 horizontal layers.
Basidia arising directly from the generative hyphae, basidia cylindrical, straight, 4-celled, 48.5–83 × 6.5–13 µm, colourless. Probasidia subglobose or ovoid, 13–23 × 7–20.5 µm, colourless, persistent. Haustoria consisting of irregularly coiled hyphae.
Basidiospores narrowly cylindrical, colourless, thin-walled, with septa, (6.5–)7–9(–9.5) × (3–)3.5–4.5(–5) µm, L = 8.09 µm, W = 3.94 µm, Q = 1.55–2.83 (n = 60/2).
Growing on the plant Betulaceae Gray, associated with the insect of Diaspididae Ferris.
(paratype). China • Yunnan Province, Pu’er, Jingdong County, Wuliangshan National Nature Reserve, 24°29'17"N, 100°40'27"E, altitude: 1800 m a.s.l., on the living tree of angiosperm, leg. C.L. Zhao, 6 January 2019, CLZhao 9658 (SWFC).
China • Yunnan Province, Pu’er, Jingdong County, The Forest of Pineapple, 24°30'58"N, 100°52'31"E, altitude: 2000 m a.s.l., on the living tree of angiosperm, leg. C.L. Zhao, 4 January 2019, CLZhao 9430 (SWFC).
Differs from other Septobasidium species by a cinnamon brown to chestnut brown surface, subglobose to pyriform probasidia (10.5–19.5 × 5.5–9 µm), and two types of haustoria consisting of irregularly coiled hyphae and spindle-shape.
Puerense (Lat.): refers to the locality (Pu’er) of the type specimen.
Basidiomata perennial, resupinate, hard to separate from substrate, coriaceous upon drying, up to 15 cm long, 1 cm wide,1 mm thick. Hymenial surface smooth, pale brown when fresh, cinnamon brown to chestnut brown upon drying. Sterile margin slightly brown, up to 1 mm.
Septobasidium puerense (holotype, CLZhao 9430) A, B basidiomata on branch C sections of basidiomata D probasidia E basidia (arrow) F hyphae G haustoria consisting of irregularly coiled hyphae H the spindle-shaped haustoria I, J scale insect on branches. Scale bars: 1 cm (A); 1 mm (B); 100 µm (C); 10 µm (D–H); 1 µm (I).
Hyphal system monomitic, generative hyphae with simple septa, pale brown, thick-walled. In section 380–650 µm thick; subiculum pale brown, 10–30 µm thick; pillars brown, 170–380 µm high, 40–85 µm wide, hyphae of pillars 1.5–3.5 µm thick, colorless, with closely packed parallel upright threads, forming 2–3 horizontal layers.
Basidia arising directly from the generative hyphae, cylindrical or slightly irregular, slightly curved, 2-3-celled, 17–30.5 × 3–6.5 µm, colourless. Probasidia subglobose to pyriform, 10.5–19.5 × 5.5–9 µm, colorless, probasidia cell persistent after the formation of the basidia. Basidiospores not seen. Haustoria with two types: 1) consisting of irregularly coiled hyphae; 2) spindle-shape.
Growing on the plant Berberidaceae Juss, associated with the insect species Pseudaulacaspis pentagona (Targioni Tozzetti).
(paratype). China • Yunnan Province, Pu’er, Jingdong Country, Wuliangshan National Nature Reserve, 24°29'17"N, 100°40'27"E, altitude: 1800 m a.s.l., on the living tree of angiosperm, leg. C.L. Zhao, 5 October 2017, CLZhao 4298 (SWFC).
China • Yunnan Province, Pu’er, Zhenyuan County, Heping Town, Liangzi Village, Wuliangshan National Nature Reserve, 24°29'17"N, 100°40'27"E, altitude: 1860 m a.s.l., on the living tree of angiosperm, leg. C.L. Zhao, 15 January 2018, CLZhao 5809 (SWFC).
Differs from other Septobasidium species by the coriaceous basidiomata with a slightly brown surface, cylindrical or slightly irregular basidia, pyriform to subglobose or ovoid probasidia (7.5–13 × 4.5–9 µm), and the haustoria consisting of irregularly coiled hyphae.
Wuliangshanense (Lat.): refers to the locality (Wuliangshan) of the type specimen.
Basidiomata perennial, resupinate, easy to separate from substrate, coriaceous upon drying, up to 10 cm long, 2 cm wide, 1 mm thick. Hymenial surface smooth, cream to pale brown when fresh, slightly brown upon drying. Sterile margin cream to slightly brown, up to 2 mm.
Hyphal system monomitic, generative hyphae with simple septa, pale brown, thick-walled. In section 660–1200 µm thick; subiculum pale brown, 20–50 µm thick; pillars brown, 150–300 µm high, 30–150 µm wide, hyphae of pillars 3–4 µm thick, brown, forming 2–3 horizontal layers.
Basidia arising directly from the generative hyphae, cylindrical or slightly irregular, colourless, straight or slightly curved, 2-3-celled, 21.5–29 × 5.5–9 µm. Probasidia pyriform, subglobose or ovoid, 7.5–13 × 4.5–9 µm, colorless, probasidia cell persistent after the formation of the basidia. Haustoria consisting of irregularly coiled hyphae. Basidiospores not seen.
Growing on the plant Fagaceae Dumort, associated with the insect genus Aulacaspis Cockerell.
(paratype). China • Yunnan Province, Pu’er, Jingdong County, Wuliangshan National Nature Reserve, in association with the genus Aulacaspis on Rosaceae, 24°29'17"N, 100°40'27"E, altitude: 1800 m a.s.l., on the living tree of angiosperm, leg. C.L. Zhao, 2 October 2017, CLZhao 3666 (SWFC).
Many recently described wood-inhabiting fungal taxa have been reported worldwide, including in the genus Septobasidium (
Based on ITS topology (Fig.
Phylogenetically, based on the ITS topology (Fig.
Morphologically, Septobasidium cokeri Couch. differs from S. macrobasidium by its pure white hymenial surface and restricted growth on Quercus rubra L. (
Septobasidium guangxiense Wei Li bis & L. Guo differs from S. puerense in its yellowish brown hymenial surface with numerous fissures at maturity and larger basidia (27–38 × 5–10 µm;
Morphologically, several species of Septobasidium broussonetiae C.X. Lu, L. Guo & J.G. Wei, S. brunneum Wei Li bis & L. Guo, S. capparis S.Z. Chen & L. Guo, S. euryae-groffii C.X. Lu & L. Guo, S. fissuratum Wei Li bis & L. Guo and S. gaoligongense C.X. Lu & L. Guo are similar to S. wuliangshanense were found in China. However, S. broussonetiae is distinguished by its cracking basidiomata and growth on Broussonetia papyrifera (L.) L’Hér. ex Vent. (
Based on our phylogenetic and morphological research results, 61 species have been reported from China, including newly described in the present study and other recently published papers in this country (
The authors have declared that no competing interests exist.
No ethical statement was reported.
The research was supported by the National Natural Science Foundation of China (Project Nos: 32170004, U2102220), Forestry Innovation Programs of Southwest Forestry University (Project No: LXXK-2023Z07) and the Yunnan Province College Students Innovation and Entrepreneurship Training Program (Project no. s202310677041; s202310677028).
Conceptualisation, CZ and QJ; methodology, CZ and QJ; software, CZ, QJ and ZK; validation, CZ and QJ; formal analysis, CZ and QJ; investigation, CZ and QJ; resources CZ; writing – original draft preparation, CZ, QJ, ZK and XW; writing – review and editing, CZ and QJ; visualisation, CZ and QJ; supervision, CZ and QJ; project administration, CZ; funding acquisition, CZ. All authors have read and agreed to the published version of the manuscript.
Qianquan Jiang https://orcid.org/0009-0003-0644-3638
Zhengli Kang https://orcid.org/0009-0003-1878-6822
Xubo Wang https://orcid.org/0000-0001-5996-6027
Changlin Zhao https://orcid.org/0000-0002-8668-1075
All of the data that support the findings of this study are available in the main text.