Research Article |
Corresponding author: Yuan Yuan ( yuanyuan1018@bjfu.edu.cn ) Corresponding author: Shuang-Hui He ( heshuanghui@bjfu.edu.cn ) Academic editor: R. Henrik Nilsson
© 2024 An-Hong Zhu, Zhan-Bo Liu, Yue Li, Hong-Gao Liu, Yuan Yuan, Shuang-Hui He.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Zhu A-H, Liu Z-B, Li Y, Liu H-G, Yuan Y, He S-H (2024) Molecular and morphological data reveal two new species of Tropicoporus (Hymenochaetaceae, Basidiomycota) from Australia and tropical Asia. MycoKeys 103: 57-70. https://doi.org/10.3897/mycokeys.103.119027
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Phylogenetic analyses and morphological examination confirmed two new species in the tropical polypore genus Tropicoporus, T. oceanianus and T. zuzaneae, from Australia and tropical Asia, respectively. A phylogenetic analysis based on the two DNA markers including the nuclear ribosomal internal transcribed spacer (ITS) region and the large subunit (nLSU) gene shows that these two new species form two independent lineages nested in the genus Tropicoporus. T. oceanianus is characterized by perennial and ungulate basidiomata, the occasional presence of hymenial setae, a trimitic hyphal structure in the context and a dimitic hyphal system in the trama, and broadly ellipsoid to subglobose basidiospores measuring 5.2–6 × 4–5 μm. T. zuzaneae is characterized by perennial and resupinate basidiomata with distinct receding margin, glancing pores, very thin to almost lacking subiculum, a dimitic hyphal structure, the absence of any setal elements, broadly ellipsoid to subglobose basidiospores measuring 3.8–4.9 × 3–4.2 µm. The differences among the new species and their phylogenetically related and morphologically similar species are discussed.
Phellinus, Phylogenetic analysis, polypore, wood-rotting fungi
Tropicoporus L.W. Zhou et al. (Hymenochaetaceae, Basidiomycota) is mainly a tropical polypore genus, and it is characterized by annual to perennial, resupinate to distinctly pileate basidiomata with yellow-brown to umber pore surface, a dimitic hyphal system at least in the trama, the presences of hymenial setae, and yellowish, slightly thick-walled, smooth, and usually collapsed basidiospores which become darker in a 5% KOH solution in a few species (
Tropical Pacific areas are rich for species of Hymenochaetales, and many new taxa have been described from these areas recently (
A study on tropical polypores recovered four specimens from Australia and tropical Asia that morphologically fit the definition of Tropicoporus. Phylogenetic analyses assigned these specimens to two independent lineages nested in the Tropicoporus clade. Morphological comparison with all the taxa in Phellinus s.l. was carried out, and no existing taxa fit them. We thus describe two new species based on our studied samples and molecular data.
The studied specimens are deposited in the
Fungarium of the Institute of Microbiology, Beijing Forestry University (
A CTAB rapid plant genome extraction kit-DN14 (Aidlab Biotechnologies Co., Ltd, Beijing) was used to obtain DNA from dried specimens, and to perform the polymerase chain reaction (PCR) according to the manufacturer’s instructions with some modifications (
The PCR procedure for ITS was as follows: initial denaturation at 95 °C for 3 min, followed by 34 cycles at 94 °C for 40 s, annealing at 54 °C for 45 s and extension 72 °C for 1 min, and a final extension of 72 °C for 10 min. The PCR procedure for nLSU was as follows: initial denaturation at 94 °C for 1 min, followed by 34 cycles of denaturation at 94 °C for 30 s, annealing at 50 °C for 1 min and extension at 72 °C for 1.5 min, and a final extension at 72 °C for 10 min. The PCR products were purified and sequenced at the Beijing Genomics Institute (BGI), China, with the same primers. DNA sequencing was performed at the Beijing Genomics Institute and the newly generated sequences were deposited in GenBank. All sequences analysed in this study are listed in Table
Taxa information and GenBank accession numbers of the sequences used in this study. New species are shown in bold. * Holotype.
Species | Locality | Voucher No. | GenBank accession numbers | |
---|---|---|---|---|
ITS | nLSU | |||
Inonotus compositus | China | Wang 552 | KP030781 | KP030768 |
Inonotus cuticularis | Canada | QFB-888 | AF237730 | – |
Perenninotus shoreicola | China | Dai 13614 | KJ575522 | KT749416 |
Perenninotus shoreicola | China | Dai 13615 | KJ575523 | KT749417 |
Sanghuangporus alpinus | China | Cui 9658 * | JQ860310 | KP030771 |
Sanghuangporus alpinus | China | Cui 9646 | JQ860313 | – |
Sanghuangporus australianus | Australia | Dai 18847 * | MZ484581 | MZ437411 |
Sanghuangporus lagerstroemiae | Vietnam | Dai 18337 * | MZ484582 | MZ437412 |
Sanghuangporus lonicericola | China | Cui 10994 | MF772786 | MF772804 |
Sanghuangporus lonicericola | China | Dai 8376 | JQ860308 | KP030772 |
Sanghuangporus pilatii | Czechia | BRNM 771989 | KT428764 | KT428765 |
Sanghuangporus sanghuang | China | Wu 0903-1 | JN794061 | – |
Sanghuangporus weigelae | China | Yuan 5526 | JN169786 | JN169790 |
Tropicoporus angustisulcatus | Brazil | Dai 17409 * | MZ484584 | MZ437417 |
Tropicoporus angustisulcatus | French Guiana | JV 1808/83 | MZ484585 | MZ437418 |
Tropicoporus boehmeriae | China | Dai 20522 | MZ484586 | MZ437419 |
Tropicoporus boehmeriae | China | Dai 20617 | MZ484587 | MZ437420 |
Tropicoporus boehmeriae | Thailand | LWZ 20140729-10 * | KT223640 | – |
Tropicoporus cleistanthicola | India | MUBL1089 * | OR272292 | OR272337 |
Tropicoporus cleistanthicola | India | MUBL1090 | OR272291 | OR272336 |
Tropicoporus cubensis | Cuba | MUCL 47079 * | JQ860325 | KP030776 |
Tropicoporus cubensis | Cuba | MUCL 47113 | JQ860324 | KP030777 |
Tropicoporus dependens | USA | JV 0409/12-J | KC778777 | MF772818 |
Tropicoporus dependens | USA | JV 1207/3.4-J | KC778779 | – |
Tropicoporus detonsus | USA | IDR 1300012986 | KF695121 | KF695122 |
Tropicoporus detonsus | French Guiana | MUCL 45517 | MZ484589 | EF429237 |
Tropicoporus drechsleri | Argentina | CTES 570140 | MG242439 | MG242444 |
Tropicoporus drechsleri | Argentina | CTES 570144 * | MG242437 | MG242442 |
Tropicoporus excentrodendri | China | Yuan 6227 | KP030788 | – |
Tropicoporus excentrodendri | China | Yuan 6232 * | KP030790 | – |
Tropicoporus flabellatus | Brazil | VRTO873 * | MT908376 | MT906643 |
Tropicoporus flabellatus | Brazil | JB7 | MT925653 | MT925654 |
Tropicoporus guanacastensis | Costa Rica | JV 1408/25 | KP030793 | KP030778 |
Tropicoporus guanacastensis | Costa Rica | O 19228 | KP030794 | MF772819 |
Tropicoporus hainanicus | China | Dai 17705 * | MZ484588 | MZ437421 |
Tropicoporus indicus | India | MUBL1083 * | OR272293 | OR272338 |
Tropicoporus indicus | India | MUBL1084 | OR272294 | OR272339 |
Tropicoporus lineatus | Malaysia | Dai 21196 * | MZ484594 | MZ437426 |
Tropicoporus linteus | USA | JV 0904/140 | JQ860323 | KP030780 |
Tropicoporus linteus | USA | JV 0904/64 | JQ860322 | JX467701 |
Tropicoporus melleoporus | USA | CBS 145357 | NR_168219 | NG_068906 |
Tropicoporus melleoporus | USA | TX8 | MN108123 | MN113949 |
Tropicoporus minor | China | Dai 18487A | MZ484590 | MZ437422 |
Tropicoporus minor | Malaysia | Dai 18601 | MZ484591 | MZ437423 |
Tropicoporus minor | Malaysia | Dai 21139 * | MZ484592 | MZ437424 |
Tropicoporus minor | Malaysia | Dai 21183 | MZ484593 | MZ437425 |
Tropicoporus natarajaniae | India | MUBL4020 * | OP003882 | – |
Tropicoporus nullisetus | Brazil | VRTO195 | MN795118 | MN812254 |
Tropicoporus nullisetus | Brazil | VRTO131 | MN795117 | MN812253 |
Tropicoporus nullisetus | Brazil | VXLF616 * | MN795129 | MN812261 |
Tropicoporus oceanianus | Australia | Dai 18859 * | PP034280 | – |
Tropicoporus oceanianus | Australia |
|
KP013017 | KP013017 |
Tropicoporus oceanianus | Australia |
|
KP012908 | KP012908 |
Tropicoporus oceanianus | Australia |
|
KP012961 | KP012961 |
Tropicoporus pseudoindicus | MUBL1087 | India * | OR272295 | OR272340 |
Tropicoporus pseudoindicus | MUBL1088 | India | OR272296 | OR272341 |
Tropicoporus pseudolinteus | USA | JV 0312/22.10-J | KC778780 | – |
Tropicoporus pseudolinteus | Venezuela | JV 0404/35-K * | KC778781 | MF772820 |
Tropicoporus pseudolinteus | Costa Rica | O 906288 | KP030795 | – |
Tropicoporus ravidus | China | Dai 18165 * | MZ484595 | MZ437427 |
Tropicoporus rudis | Rwanda | O 915614 | KP030796 | – |
Tropicoporus rudis | Tanzania | O 915617 | KP030797 | MH101016 |
Tropicoporus sideroxylicola | USA | JV 0409/30-J * | KC778782 | – |
Tropicoporus sp. | Brazil | URM 80348 | MZ484596 | MZ437428 |
Tropicoporus stratificans | Brazil | SMDB 14731 | KM199688 | – |
Tropicoporus subramaniae | India | MUBL4021 * | OP003881 | – |
Tropicoporus substratificans | French Guiana | JV 1908/80 * | MZ484597 | MZ437429 |
Tropicoporus substratificans | Brazil | VRTO884 | MN795124 | MN812266 |
Tropicoporus tamilnaduensis | India | MUBL1085 * | OR272297 | OR272343 |
Tropicoporus tamilnaduensis | India | MUBL1086 | – | OR272344 |
Tropicoporus tenuis | China | Dai 19699 * | MZ484598 | MZ437430 |
Tropicoporus tenuis | China | Dai 19724 | MZ484599 | MZ437431 |
Tropicoporus zuzaneae | China | Dai 22168 | PP034281 | PP034283 |
Tropicoporus zuzaneae | China | Dai 22171 * | PP034282 | PP034284 |
Tropicoporus zuzaneae | Indonesia | JV 1502/5-Zuz | PP383896 | – |
Tropicoporus zuzaneae | Thailand | TBP00705 | KT800054 | – |
Tropicoporus zuzaneae | Thailand | BCC 23706 | KP059109 | KP059108 |
The two genetic markers were concatenated into a single multiple sequence alignment for phylogenetic analysis (TreeBase accession ID 31179; Study Accession URL: http://purl.org/phylo/treebase/phylows/study/TB2:S31179). Sequences of Phellinus betulinus (Murrill) Parmasto, obtained from GenBank, were used as the outgroups following
Sequences were analysed using Maximum Likelihood (ML) with RAxML-HPC through the CIPRES Science Gateway (www.phylo.org;
The concatenated two-marker dataset included sequences from 77 samples representing 41 taxa. The dataset had an aligned length of 2371 characters, of which 1664 (70%) were constant, 193 (8%) were variable and parsimony-uninformative, and 514 (22%) were parsimony informative. The phylogenetic reconstructions performed with Maximum Likelihood (ML) and Bayesian Inference (BI) analyses produced similar topologies and only minor differences in statistical support. The best model-fit applied in the Bayesian analysis was GTR+I+G. Bayesian analysis resulted in a nearly congruent topology with respect to the ML analysis, and thus only the ML tree is provided (Fig.
Oceanianus (Lat.): refers to the species being found in Oceania.
Basidiomata. Perennial, pileate, solitary, woody hard and without odor or taste when fresh, bone hard when dry; pilei ungulate to triquetrous, projecting up to 2 cm, 3 cm wide, and 2.5 cm thick at base; pileal surface vinaceous gray to black when fresh and dry, concentrically sulcate with narrow zones, velutinate to glabrous, encrusted with age, distinctly cracked; margin more or less acute, snuff brown. Pore surface fawn brown when fresh, becoming umber when dry, glancing; sterile margin fawn brown when fresh and dry, distinctly paler than pores, up to 2 mm wide; pores circular, 6–7 per mm; dissepiments thick, entire. Context homogeneous, fulvous, woody hard, up to 3 mm thick, a black crust present at pileal surface. Tubes concolorous with pore surface, bone hard to brittle, up to 22 mm long, annual layers indistinct.
Hyphal structure. Hyphal system trimitic in context, dimitic in trama; generative hyphae simple septate; all hyphae IKI–, CB–; tissue becoming blackish brown in KOH.
Context. Generative hyphae infrequent, pale yellowish, thin- to thick-walled, rarely branched, frequently septate, 2–3 µm in diam; skeletal hyphae dominant, yellowish to brown, thick-walled with a narrow to medium lumen, dichotomously branched like the so-called skeleto-binding hyphae, strongly flexuous, interwoven, skeletal parts 3–5 µm in diam.
Trama of the tubes. Generative hyphae hyaline to pale yellowish, thin- to thick-walled, rarely branched, frequently septate, 2–2.5 µm in diam; skeletal hyphae thick-walled with a medium lumen, rarely branched, aseptate, flexuous, loosely interwoven, 2.5–3 µm in diam; hymenial setae occasionally present, subulate, dark brown, 22–30 × 4.5–6.5 µm; cystidioles present, fusoid, hyaline, thin-walled, 10–18 × 3.5–5 µm; basidia barrel-shaped, with four sterigmata and a simple septum at the base, 9–12 × 4–5 µm; basidioles capitate, slightly smaller than basidia.
Spores. Basidiospores broadly ellipsoid to subglobose, thick-walled, mostly collapsed, IKI–, CB–, (5–)5.2–6(–6.1) × (3.8–)4–5(5.1) μm, L = 5.60 μm, W = 4.61 μm, Q = 1.21 (n = 30/1).
Basidiomata. Perennial, resupinate, firmly attached to the substrate, corky and without distinctive odor or taste when fresh, hard corky when dry, up to 40 cm long, 3 cm wide, and 3 mm thick at center. Pore surface pinkish buff when fresh, fawn to snuff brown and cracked when dry, distinctly glancing; sterile margin paler than pores when fresh, pale mouse gray when dry, up to 3 mm wide, distinctly receding; pores angular to circular, 6–8 per mm; dissepiments thin, entire. Subiculum very thin to almost lacking, yellowish brown, corky, less than 0.1 mm thick. Tubes paler than pore surface, brittle, up to 2.9 mm long, annual layers indistinct.
Hyphal structure. Hyphal system dimitic; generative hyphae simple septate; all hyphae IKI–, CB–; tissue becoming blackish brown in KOH.
Subiculum. Generative hyphae hyaline to pale brownish, thin- to thick-walled, unbranched, frequently septate, 2–3 µm in diam; skeletal hyphae brownish, thick-walled with a wide lumen, unbranched, aseptate, strongly flexuous, interwoven, 2–3.5 µm in diam.
Trama of the tubes. Generative hyphae hyaline to pale yellowish, thin- to thick-walled, rarely branched, frequently septate, 1.8–2.8 µm in diam; skeletal hyphae yellowish, thick-walled with a wide lumen, unbranched, aseptate, more or less straight, subparallel along tubes, 2.5–3 µm in diam; hymenial setae absent; cystidioles present, fusoid, hyaline, thin-walled, 15–20 × 3.5–4.5 µm; basidia barrel-shaped, with four sterigmata and a simple septum at the base, 9–11 × 7–8 µm; basidioles dominant in hymenium, capitate, slightly smaller than basidia; rhomboid crystals frequently present in trama and hymenium.
Spores. Basidiospores broadly ellipsoid to subglobose, pale yellowish, slightly thick-walled, mostly collapsed, IKI–, CB(+), 3.8–4.9(–5.1) × (3–)3.1–4.2(–4.4) µm, L = 4.42 µm, W = 3.69 µm, Q = 1.2 (n = 30/1).
China. Hainan Province, Haikou, Guanlan Lake, on dead tree of Sonneratia, 28.XII.2020, Dai 22168 (BJFC036060, sterile). Indonesia, Borneo, on Rhizopora apiculata, 17.II.2015, Zuzana Egertova, Vlasák JV1502/5-Zuz (JV and
Tropicoporus oceanianus is characterized by perennial and ungulate basidiomata with glancing pores, hymenial setae occasionally present, context with a trimitic and tube trama with a dimitic hyphal system, and broadly ellipsoid to subglobose basidiospores measuring 5.2–6 × 4–5 μm. Although we studied a single specimen (Dai 18859), three samples (
Phylogenetically, T. oceanianus seems to be unrelated to other species in Tropicoporus (Fig.
Tropicoporus zuzaneae is characterized by perennial and resupinate basidiomata with receding margin, glancing pores as 6–8 per mm, very thin to almost lacking subiculum, a dimitic hyphal structure, the absence of any setal elements, broadly ellipsoid to subglobose basdiospores measuring 3.8–4.9 × 3.1–4.2 µm. We studied two Chinese specimens (Dai 18859, Dai 22168) and one Indonesian sample (JV 1502/5-Zuz), but two other samples (TBP00705 and BCC 23706) from Thailand have available sequences in GenBank, and their ITS sequences (KT800054 and KP059109) are identical to our studied samples. So, we treat TBP00705 and BCC 23706 as Tropicoporus zuzaneae.
Phylogenetically, the new species is closely related to Tropicoporus tenuis Y.C. Dai & F. Wu, T. ravidus Y.C. Dai & F. Wu, T. minor Y.C. Dai & F. Wu, T. detonsus (Fr.) Y.C. Dai & F. Wu, T. flabellatus V.R.T. Oliveira et al. and T. melleoporus (Murrill) Salvador-Montoya & Drechsler-Santos with strong support (Fig.
Two new members of Tropicoporus are described in the present paper. Tropicoporus oceanianus is unique in the genus by its trimitic hyphal structure in context, and T. zuzaneae is unique in the genus by its absence of any setal elements. We thus modify the definition of Tropicoporus to be annual to perennial, resupinate to distinctly pileate basidiomata with yellow-brown to umber pore surface, mostly a dimitic hyphal system at least in trama, a few with trimitic or monomitic hyphal system in context, hymenial setae present in most species, and yellowish, slightly thick-walled, smooth, usually collapsed basidiospores which become darker in a 5% KOH solution in a few species, growing on angiosperm wood and causing a white rot.
Special thanks are due to Prof. Yu-Cheng Dai (Beijing Forestry University) and Dr. Josef Vlasák (Biology Centre of the Academy of Sciences of the Czech Republic) who allowed us to study their specimens. We thank Qiu-Yue Zhang and Kai-Yue Luo (Beijing Forestry University) for helping in the laboratory examination of the samples. The language was improved by Dr. Genevieve Gates (Hobart, Australia).
The authors have declared that no competing interests exist.
No ethical statement was reported.
The research was supported by the Research Project of Yunnan Key Laboratory of Gastrodia and Fungi Symbiotic Biology (TMKF2023A03), the Yunnan Province expert workstation program (No. 202205AF150014) and the National Natural Science Foundation of China (Project No. 32161143013).
An-Hong Zhu and Zhan-Bo Liu designed the research and contributed to data analysis and interpretation. Hong-Gao Liu, Yue Li, Yuan Yuan and Shuang-Hui He prepared the samples, drawing and drafted the manuscript. Yuan Yuan and Shuang-Hui He discussed the results and edited the manuscript. All authors contributed to the article and approved the submitted version.
Zhan-Bo Liu https://orcid.org/0000-0002-3894-5398
Yue Li https://orcid.org/0000-0003-4091-1506
Yuan Yuan https://orcid.org/0000-0001-6674-9848
Shuang-Hui He https://orcid.org/0000-0003-4702-3034
The sequences are deposited in the GenBank database (Table