Research Article |
Corresponding author: XiaoYong Liu ( 622001@sdnu.edu.cn ) Corresponding author: Bo Huang ( bhuang@ahau.edu.cn ) Academic editor: Kerstin Voigt
© 2024 Yong Nie, Ying Yin, Heng Zhao, XiaoYong Liu, Bo Huang.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Nie Y, Yin Y, Zhao H, Liu X, Huang B (2024) Unveiling species diversity within the family Conidiobolaceae (Entomophthorales) in China: Descriptions of two new species and reassessment of the taxonomic position of Conidiobolus polyspermus. MycoKeys 105: 203-216. https://doi.org/10.3897/mycokeys.105.117871
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In the present study, two new Conidiobolus s.s. species were described relying on the morphological studies and phylogenetic analysis utilizing nuclear large subunit of rDNA (nucLSU), mitochondrial small subunit of rDNA (mtSSU), and elongation-factor-like gene (EFL) sequences. Conidiobolus jiangxiensis sp. nov. is distinguished by its short primary conidiophores, a feature not commonly observed in other Conidiobolus s.s. species. Conversely, Conidiobolus marcoconidius sp. nov. is characterized by larger primary conidia and the emergence of 2–5 secondary conidia from each branched secondary conidiophores. Additionally, the taxonomic reassessment of C. polyspermus confirms its distinct status within the genus Conidiobolus s.s. Moreover, molecular analyses, incorporating the nucLSU, mtSSU, and EFL sequences, provide robust support for the phylogenetic placement of the two newly described species and the taxonomic identity of C. polyspermus. This investigation contributes valuable insights into the species diversity of Conidiobolaceae in China, enhancing our understanding of the taxonomy within this fungal family.
Basal fungi, EFL, mtSSU, new species, nucLSU, taxonomic position
The reclassification of conidiobolus-like fungi into three families based on phylogenetic and morphological evidence led to the establishment of the family Conidiobolaceae (Entomophthorales), housing three genera i.e. Azygosporus B. Huang & Y. Nie, Conidiobolus s.s. B. Huang & Y. Nie, and Microconidiobolus B. Huang & Y. Nie (
A comprehensive taxonomy of conidiobolus-like fungi has identified Conidiobolus s.s. as distinct from four other genera (
Previous phylogenetic analyses revealed two main clades within Conidiobolus s.s. when Capillidiaceae and Neoconidiobolaceae species were used as outgroups (
Over the last decades, only six new Conidiobolus s.s. species and three new records were reported from China (
Plant debris and soil samples were collected from Dashushan and Binhu National Forest Park, Hefei City, Anhui Province, and Aixihu Forest Wetland Park, Nanchang City, Jiangxi Province, during 2022. For isolation of conidiobolus-like fungi, we are following the previous described methods (
The micro-morphological structure of mycelium, primary conidia and conidiophores, secondary conidia, and resting spores at 400× magnification was observed under a BX51 microscope (Olympus Corporation, Tokyo, Japan) and imaged using a DP25 microscope-camera system (Olympus Corporation, Tokyo, Japan) under differential interference contrast (DIC) condition. Each character was made more than 35 measurements and the description was made with the method by
Pure cultures were grown on PDA for 7 days at 21 °C. Fresh fungal mycelia were scraped from the surface of PDA and transferred to Eppendorf tubes. Genomic DNA was extracted using a modified cetyltrimethylammonium bromide (CTAB) method (
DNA amplification was performed in a 50 μl reaction volume which contained 1 μL dNTPs (200 μM), 1 μL MgCl2 (2.5 mM), 10 µL Phusion HF buffer (5×), 1 μL primers each (0.5 μM), 100 ng genomic DNA, and 0.5 μL Taq polymerase (0.04 Unit/L, Super Pfx DNA Polymerase, Cowinbioscience Co. Ltd., Shanghai, China). PCR amplificated program followed
Species | Strains* | GenBank accession numbers | ||
---|---|---|---|---|
nucLSU | EFL | mtSSU | ||
Azygosporus macropapillatus | CGMCC 3.16068 (T) | MZ542006 | MZ555650 | MZ542279 |
parvus |
|
KX752051 | KY402207 | MK301192 |
Conidiobolus bifurcatus | CGMCC 3.15889 (T) | MN061285 | MN061482 | MN061288 |
C. brefeldianus | ARSEF 452 (T) | EF392382 | – | EF392495 |
C. chlamydosporus |
|
JF816212 | JF816234 | MK301178 |
C. coronatus | NRRL 28638 | AY546691 | DQ275337 | – |
C. coronatus |
|
JN131537 | JN131543 | – |
C. dabieshanensis | CGMCC 3.15763 (T) | KY398125 | KY402206 | MK301180 |
C. firmipilleus | ARSEF 6384 | JX242592 | – | JX242632 |
C. gonimodes |
|
JF816221 | JF816226 | MK301182 |
C. humicolus |
|
JF816220 | JF816231 | MK301184 |
C. incongruus | NRRL 28636 (T) | AF113457 | – | – |
C. iuxtagenitus | ARSEF 6378 (T) | KC788410 | – | – |
C. iuxtagenitus |
|
JX946695 | JX946700 | MK333391 |
C. jiangxiensis sp.nov. |
|
PP034291 | PP035215 | PP034295 |
C. jiangxiensis sp.nov. |
|
PP034292 | PP035216 | PP034296 |
C. khandalensis |
|
KX686994 | KY402204 | MK301185 |
C. lichenicolus |
|
JF816216 | JF816232 | MK301186 |
C. longiconidiophorus |
|
OQ540746 | OQ550509 | OQ540744 |
C. marcoconidius sp.nov. |
|
PP034289 | PP035213 | PP034293 |
C. marcoconidius sp.nov. |
|
PP034290 | PP035214 | PP034294 |
C. marcosporus |
|
KY398124 | KY402209 | MK301188 |
C. megalotocus |
|
MF616383 | MF616385 | MK301189 |
C. mycophagus |
|
JX946694 | JX946698 | MK301190 |
C. mycophilus |
|
KX686995 | KY402205 | MK301191 |
C. polyspermus |
|
MF616382 | MF616384 | MK301193 |
C. polysporus |
|
OQ540747 | OQ550510 | OQ540745 |
C. polytocus |
|
JF816213 | JF816227 | MK301194 |
C. taihushanensis | CGMCC 3.15900 (T) | MT250086 | MT274290 | MT250088 |
C. variabilis | CGMCC 3.15901 (T) | MT250085 | MT274289 | MT250087 |
Microconidiobolus nodosus |
|
JF816217 | JF816235 | MK333388 |
M. paulus | ARSEF 450 (T) | KC788409 | – | – |
M. terrestris |
|
KX752050 | KY402208 | MK301199 |
DNA sequences of three loci (nucLSU, mtSSU, and EFL) originated from Conidiobolus s.s. species were downloaded from GenBank database (Table
The concatenated dataset comprised 1883 nucleotide sites, with specific contributions of 981 for nucLSU, 501 for SSU, and 401 for EFL. Within this dataset, 964 characters remained constant, 656 were parsimony-informative, and 308 were parsimony-uninformative. Model selection for individual data from each partition in both ML and BI phylogenetic analyses resulted in the application of the GTR+I+G model. The ML optimization likelihood reached a final value of -13813.01, and the average standard deviation of the split frequencies at the end of the analyses was 0.00619. The resulting phylogram from the ML analysis is depicted in Fig.
Maximum likelihood (ML) tree obtained by phylogenetic analyses of the combined nucLSU, EFL and mtSSU sequences. Two Azygosporus and three Microconidiobolus species were served as outgroups. The proposed new species is in boldface. Maximum Likelihood bootstrap values (≥70%) / Bayesian posterior probabilities (≥0.95) of clades are provided alongside the branches. The scale bar at the bottom left indicates substitutions per site.
Contrary to previous studies (
jiangxiensis (Lat.), referring to the region where the fungus was isolated.
Jiangxi Province, China.
China, Jiangxi Province, Nanchang City, Aixihu Forest Wetland Park, 28°69′N, 115°99′E, from soil, 7 Dec. 2022, Y. Nie, holotype
Conidiobolus jiangxiensis
Colonies on PDA at 21 °C after 3 d, white, reaching ca 11 mm in diameter. Mycelia white, 8–15 μm wide, often unbranched at the edge of colony, non-septate when young, and distended to segment after 7 d. Primary conidiophores often arising from hyphae, short, 30–95 × 7–10 μm, unbranched and producing a single primary conidium, without widening upward near the tip. Primary conidia forcibly discharged, globose to subglobose, 30–41 × 24–36 μm, papilla bluntly-round, 8–13 μm wide, 3.5–9 μm long. Secondary conidiophores arising from primary conidia, bearing a single similar but smaller replicative conidium to primary conidia. Microspores not observed on the PDA culture and on the 2% water agar. Zygospores formed in axial alignment with conjugating segments after 10 days, mature zygospores smooth, usually globose, sometimes subglobose, 20–30 μm in diameter, with a 2–3 μm thick wall.
Conidiobolus jiangxiensis, C. polyspermus and C. mycophilus exhibit close phylogenetic relatedness. However, the primary conidia and zygospores of C. jiangxiensis are smaller than those of C. polyspermus, and C. jiangxiensis is further set apart from C. mycophilus by its longer primary conidiophores and larger primary conidia (
marcoconidius (Lat.), referring to its large primary conidia.
Anhui Provinces, China.
China, Anhui Province, Hefei City, Dashushan National Forest Park, 31°84′N, 117°17′E, from plant debris, 15 Mar. 2022, Y. Yin, holotype DSS 20220315. Ex-type culture
Conidiobolus marcoconidius
Colonies on PDA at 21 °C after 3 d white, reaching ca 8 mm in diameter. Mycelia colorless, unbranched at the edge of colony, distended to a width of 9–20 μm segment after 5 d. Primary conidiophores unbranched, slightly curved at the tip, producing a single primary conidium, without widening upward near the tip, 105–230 × 10–16 μm. Primary conidia forcibly discharged, mostly globose, sometimes obovoid, 45–67 × 42–58 μm, with a sharp or round papilla, 13–22 μm wide, 4–13 μm long. Secondary conidia arising from primary conidia, with a short or long secondary condiophore, similar and smaller to the primary conidia. Secondary conidiophores branched at the base or tip, thus bearing 2 secondary conidia at each tip. Sometimes form 2–5 secondary conidia like “tomatoes on sticks” from small to large at each branch. Microconidia not observed on the PDA culture and on the 2% water agar. Zygospores formed between adjacent segments after 7 days, smooth, globose, 30–45 μm in diameter, with a 2–4 μm thick wall.
Conidiobolus marcoconidius is distinguished morphologically by its larger primary conidia compared to other Conidiobolus s.s. species, with the exception of C. coronatus (
United States, Maryland, 26 July 1955, Drechsler,
Refer to
In accordance with King’s numerical taxonomy of Conidiobolus (
Over an extended period, DNA-based techniques have played a pivotal role in uncovering both inter- and intra-species phylogenetic variations, essential for describing new species (
In light of the aforementioned phylogenetic framework, our study employed the same loci (excluding EFL instead of RPB2 for ease of amplification) to investigate the phylogeny of conidiobolus-like fungi. This endeavor resulted in the establishment of four new genera, i.e. Azygosporus B. Huang & Y. Nie, Capillidium B. Huang & Y. Nie, Microconidiobolus B. Huang & Y. Nie, and Neoconidiobolus B. Huang & Y. Nie, through a combination of molecular and morphological evidence. Additionally, Conidiobolus s.s. was proposed to accommodate members in the subgenus Delacroixia (
Furthermore, our molecular analyses underscored the high sensitivity of both nucLSU and EFL sequences in delineating conidiobolus-like fungi (
In this study, we recovered the species status of C. polyspermus, while C. eurypus was synonymized with C. megalotocus. This synonymy will be subject to re-evaluation with the inclusion of molecular data for C. eurypus. Notably, C. polyspermus was also not reported to produce microconidia, a trait shared with six other Conidiobolus s.s. species. With the addition of descriptions for two new species in this manuscript, the count of Conidiobolus s.s. species lacking observation of microconidia has risen to nine. The morphological variation or genetic mutation behind this phenomenon remains a question that could be addressed not only through phylogenomic analyses but also by conducting comparative genomics analyses within a broader spectrum of Conidiobolus s.s. species.
With the introduction of two new Conidiobolus s.s. species, namely C. jiangxiensis and C. marcoconidius in the family Conidiobolaceae herein, the number of known Conidiobolus s.s. species are up to 22. However, limited reports of new species within the genera Azygosporus and Microconidiobolus in China underscore the need for an in-depth exploration of advanced species diversity within Conidiobolaceae from China in our future studies.
The authors have declared that no competing interests exist.
No ethical statement was reported.
This study was supported by the National Natural Science Foundation of China (No. 32370007, 31900008).
Conceptualization: BH. Data curation: HZ. Formal analysis: HZ. Funding acquisition: YN. Methodology: YY, YN. Resources: YY. Supervision: BH. Visualization: XL. Writing - original draft: YN. Writing - review and editing: BH, XL.
Yong Nie https://orcid.org/0000-0001-8964-1661
Heng Zhao https://orcid.org/0000-0003-2938-5613
All of the data that support the findings of this study are available in the main text.