Research Article
Print
Research Article
Phylogeny of the genus Loxospora s.l. (Sarrameanales, Lecanoromycetes, Ascomycota), with Chicitaea gen. nov. and five new combinations in Chicitaea and Loxospora
expand article infoŁucja Ptach-Styn, Beata Guzow-Krzemińska, James C. Lendemer§, Tor Tønsberg|, Martin Kukwa
‡ University of Gdańsk, Gdańsk, Poland
§ The New York State Museum, Albany, United States of America
| University of Bergen, Bergen, Norway
Open Access

Abstract

Loxospora is a genus of crustose lichens containing 13 accepted species that can be separated into two groups, based on differences in secondary chemistry that correlate with differences in characters of the sexual reproductive structures (asci and ascospores). Molecular phylogenetic analyses recovered these groups as monophyletic and support their recognition as distinct genera that differ in phenotypic characters. Species containing 2’-O-methylperlatolic acid are transferred to the new genus, Chicitaea Guzow-Krzem., Kukwa & Lendemer and four new combinations are proposed: C. assateaguensis (Lendemer) Guzow-Krzem., Kukwa & Lendemer, C. confusa (Lendemer) Guzow-Krzem., Kukwa & Lendemer, C. cristinae (Guzow-Krzem., Łubek, Kubiak & Kukwa) Guzow-Krzem., Kukwa & Lendemer and C. lecanoriformis (Lumbsch, A.W. Archer & Elix) Guzow-Krzem., Kukwa & Lendemer. The remaining species produce thamnolic acid and represent Loxospora s.str. Haplotype analyses recovered sequences of L. elatina in two distinct groups, one corresponding to L. elatina s.str. and one to Pertusaria chloropolia, the latter being resurrected from synonymy of L. elatina and, thus, requiring the combination, L. chloropolia (Erichsen) Ptach-Styn, Guzow-Krzem., Tønsberg & Kukwa. Sequences of L. ochrophaea were found to be intermixed within the otherwise monophyletic L. elatina s.str. These two taxa, which differ in contrasting reproductive mode and overall geographic distributions, are maintained as distinct, pending further studies with additional molecular loci. Lectotypes are selected for Lecanora elatina, Pertusaria chloropolia and P. chloropolia f. cana. The latter is a synonym of Loxospora chloropolia. New primers for the amplification of mtSSU are also presented.

Key words

Lichenised fungi, mtSSU, nuITS, phylogeny, RPB1, Sarrameanaceae, secondary metabolites, sorediate lichens, sterile lichens, taxonomy

Introduction

Lichens are specialised fungi that associate in symbiotic relationships with photoautotrophic partners, termed photobionts, which are mainly represented by green microalgae or cyanobacteria (Büdel and Scheidegger 2008). Numerous lichenised fungi have developed special vegetative diaspores (usually isidia and soredia), which allow the co-dispersal of symbiotic partners and maintenance of the symbiosis (Poelt 1970; Werth and Scheidegger 2012; Sanders 2014; Onuț-Brännström et al. 2018). Lichen species that produce specialised vegetative diaspores are frequently sterile, rarely producing sexual reproductive structures and ascospores (Poelt 1970). This complicates, especially in the case of taxa with crustose thalli, the determination of their systematic position and can render identification difficult due to the scarcity of diagnostic morphological characters (e.g. Ekman and Tønsberg (2002); Kukwa and Pérez-Ortega (2010); Hodkinson and Lendemer (2012, 2013); Guzow-Krzemińska et al. (2017, 2018, 2019); Malíček et al. (2018); Orange (2020); Kukwa et al. (2023)).

Some species that produce lichenised vegetative diaspores are morphologically (except for the development of such diaspores) and chemically almost identical to the taxa that lack those structures and such cases are referred to as species pairs (Poelt 1970; Crespo and Pérez-Ortega 2009). Molecular phylogenetic studies of such pairs and of species with lichenised vegetative diaspores generally, however, suggest that the situation is more complex and nuanced than binary pairs of species that either lack vegetative diaspores and are sexually reproducing or produce vegetative diaspores and are only infrequently sexually reproducing. In some cases, neither species delimited by the presence or absence of vegetative diaspores was found to be monophyletic and, instead, representatives of each were intermingled suggesting that independent lineages do not correspond to reproductive mode (e.g. Lohtander et al. (1998); Buschbom and Mueller (2006); Myllys et al. (2011); Tehler et al. (2013); Ertz et al. (2018)). In other cases, such pairs of species have been recovered as reciprocally monophyletic and sister (e.g. Miadlikowska et al. (2011); Lendemer and Harris (2014); Yakovchenko et al. (2017); Ohmura (2020)). Further, there are recent examples where next generation sequence data have provided support for species pair delimitations that lacked support from analyses of traditionally used loci that are typically more conserved and fewer in number (e.g. Grewe et al. (2018)).

The genus Loxospora A. Massal. was described by Massalongo (1852) and, at present, includes thirteen accepted species (Kalb and Hafellner 1992; Kantvilas 2000; Lumbsch et al. 2007; Lendemer 2013; Lücking et al. 2017; Guzow-Krzemińska et al. 2018). Loxospora species have been reported from many regions globally (e.g. Kalb and Hafellner (1992); Kantvilas (2000); Lumbsch et al. (2007); Papong et al. (2009); Kelly et al. (2011); Lendemer (2013); Hafellner and Türk (2016); Berger et al. (2018); Guzow-Krzemińska et al. (2018); Wirth et al. (2018); Marthinsen et al. (2019); Urbanavichus et al. (2020); Westberg et al. (2021)). The genus is classified at present in Sarrameanales B.P. Hodk. & Lendemer in Lecanoromycetes O.E. Erikss. & Winka (Lücking et al. 2017). Previous molecular phylogenetic studies have recovered Loxospora to form a well-supported clade, with members divided into two distinct clades (Lumbsch et al. 2007; Lendemer 2013; Guzow-Krzemińska et al. 2018). The species in one clade are characterised by asci having uniformly amyloid apical dome, septate, fusiform to ellipsoidal ascospores and the production of thamnolic acid as the main secondary metabolite (Hafellner 1984; Kantvilas 2000; Guzow-Krzemińska et al. 2018). This clade corresponds to Loxospora s.str. and contains the type species, L. elatina (Ach.) A. Massal. (Massalongo 1852; Galloway 2007). The second clade comprises four species producing 2’-O-methylperlatolic acid (Lumbsch et al. 2007; Lendemer 2013; Guzow-Krzemińska et al. 2018). Ascomata are known only in one of those species, L. lecanoriformis Lumbsch, A.W. Archer & Elix and, in that taxon, the asci lack an amyloid apical dome and have simple ascospores (Lumbsch et al. 2007; Papong et al. 2009). The chemical and anatomical characters, especially the ascus apical dome amyloidy, combined with the monophyletic resolution as distinct from Loxospora s.str., suggest that this latter group merits recognition at the genus level.

In summer 2021, while performing field lichen studies in northern Poland, we collected specimens resembling Loxospora elatina growing on bark of Alnus glutinosa in black alder forest. They contained thamnolic acid as the main secondary metabolite; however, the thallus was continuous to areolate, in contrast to the tuberculate thalli typically found in L. elatina (e.g. Stenroos et al. (2016)). Molecular analyses showed that these specimens and some other samples published by Kelly et al. (2011) formed a group distinct from samples of L. elatina with typical tuberculate thalli. Recognising the need to re-evaluate the delimitation of L. elatina based on this material, we analysed additional sequences and specimens of other Loxospora species to confirm the relationships amongst currently recognised species, especially L. ochrophaea (Tuck.) R.C.Harris, which has been presumed to be the strictly sexual, esorediate counterpart to L. elatina (Brodo et al. 2001; Guzow-Krzemińska et al. 2018). Based on these analyses, we recognise the material of L. elatina with continuous to areolate thalli as distinct and introduce a new combination for it, discuss the status of L. elatina s.str. and L. ochrophaea (Tuck.) R.C. Harris and introduce the genus Chicitaea for the clade of Loxospora species producing 2’-O-methylperlatolic acid, which necessitates four new combinations.

Materials and methods

Taxon sampling

Lichen material was studied from BG, BM, BILAS, E, HBG, H-ACH, NY, O, UGDA and herb. Maliček. Morphology was examined using a Nikon SMZ 800N stereomicroscope. Secondary lichen metabolites were studied by thin layer chromatography (TLC) (Culberson and Kristinsson 1970; Orange et al. 2001). For reference of squamatic acid and thamnolic acid, we used extracts from Cladonia glauca Flörke and C. digitata (L.) Baumg., respectively.

DNA extraction, PCR amplification and DNA sequencing

Small pieces of thalli (approx. 2 mm2) were put into Eppendorf tubes. Then DNA was extracted using a GeneMATRIX Plant & Fungi DNA Purification Kit (EURX) or a modified CTAB method (Guzow-Krzemińska and Węgrzyn 2000). Sequences of three molecular markers were amplified: nuITS rDNA using ITS1F (Gardes and Bruns 1993) or ITS5 (White et al. 1990) and ITS4 (White et al. 1990) primers, RPB1 using g-RPB1-A for (Stiller and Hall 1997) and f-RPB1-C rev (Matheny et al. 2002) primers and mtSSU using mrSSU1 (Zoller et al. 1999) and mrSSU3R (Zoller et al. 1999) primers. Due to difficulties in mtSSU amplification, new primers were designed by one of the authors (Beata Guzow-Krzemińska; primers here referred to as “Lox_mtSSU620_For”: 5’-TTTACCTATATGTCTTGACCAA-3’ and “Lox_mtSSU620_Rev”: 5’-CTCTTATCATATTCCAATATAATG-3’). PCR settings for each set of primers are shown in Suppl. material 1. Electrophoresis was performed on a 1% agarose gel to determine whether amplification of target molecular markers was successful. PCR products were purified using Clean-Up Concentrator (A&A Biotechnology). Sequencing was performed by Macrogen (The Netherlands). All newly-generated sequences were deposited in GenBank and their GenBank Acc. Numbers are presented in Table 1.

Table 1.

Specimen data and the GenBank accession numbers of newly-obtained sequences of the taxa used in the phylogenetic analyses. A dash provides information about lack of DNA sequence. For sequences obtained from GenBank, see Suppl. material 2.

Species Origin Collection and herbarium GenBank accession numbers
nuITS mtSSU RPB1
Chicitaea confusa 3 U.S.A. North Carolina. Carteret Co. Lendemer 35738 (NY-1885635) PP080079 PP080125
Chicitaea confusa 4 U.S.A. North Carolina. Jones Co. Lendemer 35691 (NY-1885682) PP080080 PP080126
Chicitaea confusa 5 U.S.A. North Carolina. Carteret Co. Lendemer 35485 (NY-1885425) PP080081 PP080127
Chicitaea aff. confusa 6 U.S.A. North Carolina. Jones Co. Lendemer 35655 (NY-1885717) PP080082 PP080128
Chicitaea confusa 7 U.S.A. North Carolina. Craven Co. Lendemer 35418 (NY-1885382) PP080083 PP080129
Chicitaea confusa 8 U.S.A. North Carolina. Dare Co. Lendemer 36747 (NY-1885847) PP080084
Chicitaea confusa 9 U.S.A. North Carolina. Tyrrell Co. Lendemer 36584 (NY-1886010) PP080085
Chicitaea confusa 10 U.S.A. North Carolina. Washington Co. Lendemer 36398 (NY-1886197) PP080086
Chicitaea cristinae 10 Poland. Carpathians, Bieszczady Szymczyk s.n. (UGDA L-60232) PP080087 PP080130
Loxospora chloropolia 5 Poland. Wybrzeże Słowińskie Ptach-Styn, Kukwa Lox. 1 (UGDA L-60093) PP080088 PP083715
Loxospora chloropolia 6 Poland. Wybrzeże Słowińskie Ptach-Styn, Kukwa Lox. 2 (UGDA L-60094) PP080089 PP083716
Loxospora chloropolia 7 Poland. Wybrzeże Słowińskie Ptach-Styn, Kukwa Lox. 3 (UGDA L-60095) PP080090 PP083717
Loxospora chloropolia 8 Poland. Wybrzeże Słowińskie Ptach-Styn, Kukwa Lox. 4 (UGDA L-60096) PP080091 PP083718
Loxospora chloropolia 9 Poland. Wybrzeże Słowińskie Ptach-Styn, Kukwa Lox. 5 (UGDA L-60097) PP080092
Loxospora chloropolia 10 Poland. Wybrzeże Słowińskie Ptach-Styn, Kukwa Lox. 6 (UGDA L-60098) PP080093 PP083720
Loxospora chloropolia 11 Poland. Wybrzeże Słowińskie Ptach et al. B1 (UGDA L-47764) PP080094 PP080131 PP083721
Loxospora chloropolia 12 Poland. Wybrzeże Słowińskie Ptach et al. B2 (UGDA L-47765) PP080095 PP080132 PP083714
Loxospora chloropolia 13 Poland. Wybrzeże Słowińskie Ptach et al. B3 (UGDA L-47766) PP080096 PP080133
Loxospora cismonica 2 U.S.A. Tennessee. Blount Co. Lendemer 44526 (NY-2438341) PP080097
Loxospora cismonica 3 Canada. New Brunswick. Charlotte Co. Harris 61785 (NY-2712391) PP080098 PP080134
Loxospora cismonica 4 Romania. Carpathians Malíček 14899, Steinová (herb. Malíček) PP080135
Loxospora elatina 6 Poland. Carpathians, Bieszczady Szymczyk s.n. (UGDA L-47757) PP080099 PP080136
Loxospora elatina 7 Poland. Carpathians, Bieszczady Szymczyk s.n. (UGDA L-47759) PP080100 PP080137
Loxospora elatina 8 Poland. Carpathians, Bieszczady Szymczyk s.n. (UGDA L-47760) PP080101 PP080138
Loxospora elatina 9 Poland. Carpathians, Bieszczady Szymczyk s.n. (UGDA L-47761) PP080102 PP080139
Loxospora elatina 10 Poland. Carpathians, Bieszczady Szymczyk s.n. (UGDA L-47762) PP080103 PP080140
Loxospora elatina 11 Poland. Białowieski National Park Szymczyk 883 (UGDA L-47745) PP080104
Loxospora elatina 12 Poland. Białowieski National Park Szymczyk 1076 (UGDA L-47746) PP080105 PP080141
Loxospora elatina 13 Poland. Białowieski National Park Szymczyk 1085 (UGDA L-47747) PP080106
Loxospora elatina 14 Poland. Białowieski National Park Szymczyk 1208 (UGDA L-47748) PP080107
Loxospora elatina 15 Poland. Białowieski National Park Szymczyk 1255 (UGDA L-47750) PP080108
Loxospora elatina 16 Poland. Białowieski National Park Szymczyk 1295 (UGDA L-47751) PP080109 PP080142
Loxospora elatina 17 Poland. Równina Bielska Szymczyk 1405 (UGDA L-47752) PP080120
Loxospora elatina 18 Poland. Równina Bielska Szymczyk 1464 (UGDA L-47755) PP080121
Loxospora elatina 19 Estonia. Pärnu Co. Kukwa 20481 (UGDA L-34378) PP080147
Loxospora elatina 20 U.S.A. Maine. Washington Co. Harris 60661 (NY-1818725) PP080119
Loxospora elatina 21 U.S.A. Michigan Cheboygan Co. Lendemer 45025 (NY-2439450) PP080117
Loxospora elatina 22 U.S.A. New York. Greene Co. Lendemer 52960 (NY-3217196) PP080114
Loxospora elatina 23 U.S.A. North Carolina. Haywood Co. Lendemer 53286 (NY-3218018) PP080115
Loxospora elatina 24 U.S.A. North Carolina. Macon Co. Lendemer 46493 (NY-2795153) PP080145
Loxospora elatina 25 U.S.A. Tennessee. Sevier Co. Tripp 5040 (NY-2358356) PP080110 PP080143
Loxospora elatina 26 Canada. Newfoundland McCarthy 4138 (NBM) PP080122 PP083719
Loxospora elatina 27 Canada. Newfoundland McCarthy 4139 (NBM) PP080123
Loxospora elatina 28 Russia. Caucasus Mts Malíček et al. 10346 (herb. Malíček) PP080146
Loxospora elatina 29 Czechia. Southern Bohemia Malíček 14726 (herb. Malíček) PP080148
Loxospora elatina 30 Czechia. Silesia Malíček et al. 8916 (herb. Malíček) PP080149
Loxospora elatina 31 Russia. Caucasus Mts Malíček et al. 10515 (herb. Malíček) PP080150
Loxospora ochrophaea 3 U.S.A. Maine. Washington Co. Harris 60662 (NY-1818726) PP080116
Loxospora ochrophaea 4 U.S.A. North Carolina. Yancey Co. Kraus 44 (NY-2607571) PP080124
Loxospora ochrophaea 5 U.S.A. North Carolina. Haywood Co. Lendemer 45473 (NY-2440690) PP080111
Loxospora ochrophaea 6 U.S.A. Tennessee. Sevier Co. Lendemer 47245 (NY-2795450) PP080112 PP080144
Loxospora ochrophaea 7 U.S.A. Tennessee. Sevier Co. Lendemer 46150 (NY-2606798) PP080113 PP091207
Loxospora ochrophaea 8 U.S.A. Tennessee. Sevier Co. Lendemer 45684 (NY-2441234) PP080118

Sequence alignments and phylogenetic analyses

The newly-obtained sequences were trimmed using the Chromas programme (http://technelysium.com.au/wp/). All sequences were analysed using BLASTn search (Altschul et al. 1990). Independent alignments of nuITS, mtSSU rDNA and RPB1 markers were prepared using Seaview software (Galtier et al. 1996; Gouy et al. 2010) employing muscle option and guidance2 software implemented on an online website (Sela et al. 2015; https://guidance.tau.ac.il/). Single locus alignments consisted of 68 nuITS rDNA sequences with 548 sites, 47 mtSSU rDNA sequences with 635 sites and 13 RPB1 sequences with 562 sites. Then, datasets were concatenated into one matrix which consisted of 83 terminals with 1745 positions. The concatenated dataset was subjected to IQ-TREE analysis to find best-fitting nucleotide substitution models for each partition (Nguyen et al. 2015; Chernomor et al. 2016; Kalyaanamoorthy et al. 2017; Hoang et al. 2018). The model selection was restricted to models implemented in MrBayes and the following nucleotide substitution models for the three predefined subsets were selected: HKY+F+I for mtSSU rDNA, K2P+F+G4 for nuITS and K2P+F+I for RPB1. The search for the Maximum Likelihood tree was performed in IQ-TREE and followed with 1000 bootstrap replicates (Nguyen et al. 2015; Chernomor et al. 2016; Kalyaanamoorthy et al. 2017; Hoang et al. 2018).

The Bayesian analysis was conducted using MrBayes 3.2.7a (Huelsenbeck and Ronquist 2001; Ronquist and Huelsenbeck 2003) on the CIPRES Science Gateway (Miller et al. 2010). The analyses were conducted by running 10,000,000 generations. The chain was sampled every 1000th generation. Posterior probabilities (PP) were determined by calculating a majority-rule consensus tree after discarding the initial 25% trees of each chain as the burn-in. All trees were visualised in FigTree v.1.4. (Rambaut 2009) and further modified in Inkscape (https://inkscape.org/). Bootstrap support (BS values ≥ 75) and PP values (values ≥ 0.95) are given near the branches on the phylogenetic tree.

Sequences obtained from GenBank and used in phylogenetic analyses are listed in Suppl. material 2.

Preparation of haplotype networks

Moreover, independent alignments of each marker for specimens of L. elatina, L. ochrophaea and L. chloropolia were prepared using Seaview software (Galtier et al. 1996; Gouy et al. 2010) employing muscle option and followed with manual correction. The final nuITS rDNA alignment consisted of 46 sequences with 443 sites, while RPB1 alignment consisted of 11 sequences with 723 sites. Haplotype analyses were performed using PopART software (https://popart.maths.otago.ac.nz) employing TCS network option (Clement et al. 2002). Moreover, variable sites that distinguish these taxa were identified. Similar analyses were done for specimens of L. assateaguensis, L. confusa and L. lecanoriformis. The final alignment of nuITS rDNA consisted of 11 sequences with 534 sites, while mtSSU rDNA alignment consisted of eight sequences and 613 sites.

Results and discussion

The representatives of the genus Loxospora s.l. are split into two highly-supported major clades (Fig. 1). The larger clade corresponds to Loxospora s.str. (type: L. elatina), all containing thamnolic acid as the main secondary lichen substance and having asci with a uniformly amyloid apical dome and ascospores that are septate, fusiform to ellipsoidal and somewhat curved or twisted (Tønsberg 1992; Brodo et al. 2001; Sanderson et al. 2008). This clade is divided into two subclades. The smaller one consists of representatives of L. cismonica (Beltr.) Hafellner, while the larger subclade consists of two poorly-supported lineages, which might be the result of uneven coverage of sequences for each species in this subclade (see Table 1, Suppl. material 2). However, the phylogenetic analyses, based only on nuITS (not shown here) and the nuITS haplotype network analysis (Fig. 2), recovered these two groups as different and with high confidence. In the nuITS rDNA haplotype network analysis, these groups differ from each other in 21 nucleotide positions and the variability within the groups is up to three substitutions. Moreover, RPB1 haplotype network analysis also supports distinction of these two groups as they differ in 10 positions (Fig. 3), while the mtSSU rDNA marker showed very low variation (data not shown). The larger group includes sequences of specimens with at least partly tuberculate thalli with soralia, which are often fusing (i.e. corresponding to L. elatina s.str.) and thalli that uniformly lack soralia, but are typically fertile (i.e. corresponding to L. ochrophaea). The smaller group consists of sequences of samples in which the thalli are continuous to slightly cracked-areolate, but never tuberculate and soralia are usually discrete, rarely fusing and, if so, then only in older parts of the thallus.

Figure 1. 

IQ-tree based on a combined nuITS rDNA, mtSSU and RPB1 dataset for Loxospora s.l. The names of species are followed with sample number (see Table 1, Suppl. material 2). Bootstrap supports from IQ-tree analysis ≥ 70 (first value) and posterior probabilities from BA ≥ 0.95 (second value) are indicated near the branches. Umbilicaria spp. were used as outgroup. Loxospora chloropolia clade is marked with blue box and Chicitaea gen. nov. is marked with green box.

Figure 2. 

Haplotype network showing relationships between nuITS rDNA sequences from Loxospora chloropolia, L. elatina and L. ochrophaea. The names of species are followed with sample numbers (see Table 1, Suppl. material 2). Newly-sequenced samples are marked in bold. Mutational changes are presented as numbers in brackets near lines between haplotypes.

Figure 3. 

Haplotype network showing relationships between RPB1 sequences from Loxospora chloropolia, L. elatina and L. ochrophaea. The names of species are followed with sample numbers (see Table 1, Suppl. material 2). Newly-sequenced samples are marked in bold. Mutational changes are presented as numbers in brackets near lines between haplotypes.

The specimens whose sequences were recovered in this latter group correspond morphologically to the type material of Pertusaria chloropolia Erichsen (≡ Lecanora chloropolia (Erichsen) Almb.), not to the type of Lecanora elatina Ach. (basionym of Loxospora elatina). Pertusaria chloropolia was synonymised with Loxospora elatina by Laundon (1963), a treatment followed subsequently by Hafellner and Türk (2016) and Westberg et al. (2021). All of the existing herbarium specimens corresponding to the type of Pertusaria chloropolia and presented in this present paper were initially identified as L. elatina and filed under that name in herbaria. However, as the molecular data show, this material corresponds to a phenotypically distinct monophyletic group for which the name P. chloropolia is available. The name is resurrected from synonymy and a new combination is proposed below. The revised circumscriptions of both Loxospora chloropolia and L. elatina are presented below and lectotypes are selected for both names. Moreover, in addition to morphology, their nuITS rDNA and RPB1 sequences differ in numerous positions of which several may be used as diagnostic characters to distinguish these taxa (Tables 2, 3).

Table 2.

Variable positions in the alignment of nuITS rDNA marker of Loxospora chloropolia, L. elatina and L. ochrophaea. Variable characters are marked in bold, while diagnostic nucleotide position characters to distinguish L. chloropolia from both L. elatina and L. ochrophaea are marked with a gray background, including indels.

Sequence Position in alignment
11 15 16 17 19 20 27 34 35 37 38 42 43 44 45 46 52 68 79 107 311 321 332 334 340 341 342 347 371 387 389 393 401 405 412 416 417 419 420 432 435 439 441
L. chloropolia 1 C C C T T T C T A T A T C C G A T C G G C T G G T G T A T T T T T G T G G G
L. chloropolia 2 C C C T T T C T A T A T C C G A T C G G C T G G T G T A T T T T T G T G G G
L. chloropolia 3 C C C T T T C T A T A T C C G A T C G G C T G G T G T A C T T T T G T G G G
L. chloropolia 5 C C C T T T C T A T A T C C G A T C G G C T G G T G T A Y T T T T G T G G G
L. chloropolia 6 C C C T T T C T A T A T C C G A T C G G C T G G T G T A C T T T T G T G G G
L. chloropolia 8 C C C T T T C T A T A T C C G A T C G G C T G G T G T A C T T T T G T G G G
L. chloropolia 9 C C C T T T C T A T A T C C G A T C G G C T G G T G T A C T T T T G T G G G
L. chloropolia 10 C C C T T T C T A T A T C C G A T C G G C T G G T G T A T T T T T G T G G G
L. chloropolia 7 C C C T T T C T A T A T C C G A T C G G C T G G T G T A C T T T T G T G G G
L. chloropolia 4 C C C T T T C T A T A T C C G A T C G G C T G G T G T A T T T T T G T G A G
L. chloropolia 12 C C C T T T C T A T T C C G A T C G G C T G G T G T A T T T T T G T G G G
L. chloropolia 11 C C C T T T C T A T T C C G A T C G G C T G G T G T A T T T T T G T G G G
L. chloropolia 13 C C C T T T C T A T T C C G A T C G G C T G G T G T A T T T T T G T G G G
L. ochrophaea 1 C C G A A T C G C A T C T T T T T G A C T A A T C A G C C T G T C T C T G T G G G
L. ochrophaea 5 C C G A A T C G C A T C T T T T T G A C T A A T C A G C C C G T C T C T G T G G
L. ochrophaea 3 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C T C T G T G G G
L. ochrophaea 6 C Y G A A T C G C A T C T T T T T G A C T A A T C A G C C C G T C T C T G T G G G
L. ochrophaea 7 Y C G A A T C G C A T C T T T T T G A C T A A T C A G C C C G T C T C T G T G G G
L. ochrophaea 8 C C G A A T C G C A T C T T C T T G A C T A A T C A G C C C G T C T C T G T G G G
L. ochrophaea 4 C C G A A T C G C A T C T T T T T G G C T A A T C A G C C C G T C T C C G T C G G G
L. elatina 2 C C G A A T C G C A T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 3 C C G A A T C G C A T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 1 C C G A A T C G C A T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 4 C C G A A T C G C A T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 5 C C G A A T C G C A T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 6 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 8 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 10 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 7 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 12 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 22 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 23 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 11 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 9 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 21 C C G A A T C G C A T C T T T T T G A C T A A T C A G C C C G T C T C T G T G G G
L. elatina 20 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C T C T G T G G G
L. elatina 14 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 17 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 15 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 18 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G
L. elatina 13 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 16 C C G A A T C G C T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
L. elatina 26 C C G A A T C G C A T C T T T T T G A C T A A T C A G C C C G T C T C T G T G G G
L. elatina 27 C C G A A T C G C A T C T T T T T G A C T A A T C A G C C C G T C T C T G T G G G
L. elatina 25 C Y G A A T C G C A T C T T T T T S A C T A A T C A K C C C G T C T C T S Y G C G
L. elatina 32 C C G A A T C G C A T C T T T T T G A C T A A T C A G C C C G T C A C T G T G G G
Table 3.

Variable positions in the alignment of RPB1 marker of Loxospora chloropolia, L. elatina and L. ochrophaea. Variable characters are marked in bold, while diagnostic nucleotide position characters to distinguish L. chloropolia from both L. elatina and L. ochrophaea are marked with a gray background.

Sequence Position in alignment
73 82 106 201 282 291 315 342 344 355 357 414 439 441 472 475 507 513 519 527 540 603 687 700 706 711 723
L. ochrophaea 1 G G T T G T T G A G C A G G A A G G A A A T T A C A C
L. ochrophaea 2 G G T T G T T G A G C A G G A A G G A A A T T A G A C
L. elatina 1 ? ? ? T G T C G R G C A G G A A G G A G A T T N C A C
L. elatina 26 G G T T K T T R A S C A D G R M G G A A A T T A C A C
L. chloropolia 11 A A C C G C T G A G T C G A A A A T G A G C C A C G T
L. chloropolia 12 A A C C G C T G A G T C G A A A A T G A G C C A C G T
L. chloropolia 5 A A C C G C T G A G T C G A A A A T G A G C C A C G T
L. chloropolia 6 A A C C G C T G A G T C G A A A A T G A G C C A C G T
L. chloropolia 7 A A C C G C T G A G T C G A A A A T G A G C C A C G T
L. chloropolia 8 A A C C G C T G A G T C G A A A A T G A G C C A C G T
L. chloropolia 10 A A C C G C T G A G T C R A A A A T G A G C ? ? ? ? ?

The smaller clade of Loxospora s.l. is represented by L. assateaguensis Lendemer, L. confusa Lendemer, L. cristinae Guzow-Krzem., Łubek, Kubiak & Kukwa and L. lecanoriformis (Fig. 1). All these species produce 2’-O-methylperlatolic acid and it has been repeatedly suggested that they represent a group distinct from the thamnolic acid producing species of Loxospora s. str. which likely merits recognition as a distinct genus (Lumbsch et al. 2007; Lendemer 2013; Guzow-Krzemińska et al. 2018). While apothecia are known only in L. lecanoriformis, in that species, the asci lack an amyloid apical dome, unlike in Loxospora s.str. and the ascospores are simple, ellipsoidal, straight or slightly bent (Lumbsch et al. 2007; Papong et al. 2009). Due to the consistent differences from Loxospora s.str. in secondary lichen substances, the differences in ascus amyloidy and the strongly-supported monophyly of this group in molecular phylogenetic analyses, we recognise it as a distinct genus under the name Chicitaea below. Four new combinations are proposed for the species currently known to belong to this clade. Chicitaea cristinae was recovered as monophyletic and sister to the rest of the species, which form a well-supported clade, but with poorly resolved relationships between Ch. confusa and Ch. lecanoriformis. The fertile Ch. lecanoriformis, known from Australia and Thailand (Lumbsch et al. 2007; Papong et al. 2009), is nested within a subclade of sequences of Ch. confusa, an isidioid species which occurs in North America and is not known to occur in the Southern Hemisphere or Australasia (Lendemer 2013). Due to the lack of nuITS rDNA sequence for Ch. lecanoriformis and very low variation found in mtSSU sequences (Fig. 4), the relationship between these species cannot be resolved. Nevertheless, both species clearly differ morphologically and have disjunctive distributions (Lumbsch et al. 2007; Papong et al. 2009; Lendemer 2013). Chicitaea confusa seems to be paraphyletic and may represent two cryptic species (Fig. 1). This conclusion is also supported by the haplotype analyses of mtSSU and nuITS sequences (Figs 4, 5) which also show that two specimens (Ch. confusa 1 and 2) significantly differ from all the newly-sequenced representatives of Ch. confusa, but more material is needed to solve this problem. The sequences of one specimen, initially determined as Ch. confusa (Ch. aff. confusa 6; Figs 1, 4, 5), is identical in mtSSU and nuITS sequences with Ch. assateaguensis. This suggests that Ch. assateaguensis can represent a cryptic species, even though, as stated by Lendemer (2013), the species differed from Ch. confusa, but more material is necessary before final conclusions.

Figure 4. 

Haplotype network showing relationships between mtSSU rDNA sequences from Chicitaea assateaguensis, Ch. confusa and Ch. lecanoriformis. The names of species are followed with sample numbers (see Table 1, Suppl. material 2). Newly-sequenced samples are marked in bold. Mutational changes are presented as numbers in brackets near lines between haplotypes.

Figure 5. 

Haplotype network showing relationships between nuITS rDNA sequences from Chicitaea assateaguensis and Ch. confusa. The names of species are followed with sample numbers (see Table 1, Suppl. material 2). Newly-sequenced samples are marked in bold. Mutational changes are presented as numbers in brackets near lines between haplotypes.

Loxospora elatina s.str. and L. ochrophaea are morphologically similar in terms of thallus and apothecia and both produce thamnolic acid often with elatinic acid and trace amounts of squamatic acid (Tønsberg 1992; Brodo et al. 2001; Sanderson et al. 2008). The only difference between L. elatina s.str. and L. ochrophaea is the consistent presence of soralia in L. elatina (apothecia are very rare) and the absence of soralia in L. ochrophaea which is, instead, consistently fertile and routinely produces apothecia (Kalb and Hafellner 1992; Tønsberg 1992; Brodo et al. 2001; Sanderson et al. 2008). From a phenotypic perspective, these two taxa can be considered a species pair (cf. Poelt (1970); Crespo and Pérez-Ortega (2009)).

Although both species are frequently found on the acidic bark of trees and both are distributed in the Northern Hemisphere, their distributions are divergent and not entirely sympatric. Loxospora elatina is widely distributed in boreal and northern temperate areas of the Northern Hemisphere with oceanic climates (e.g. Sanderson et al. (2008); Urbanavichus (2010); Stenroos et al. (2016)). In contrast, L. ochrophaea has a narrower, disjunct distribution between the Appalachian-Great Lakes regions of eastern North America and north-eastern Asia (Japan and the Russian Far East) (e.g. Tuckerman (1848); Brodo et al. (2001); Urbanavichus (2010); Ohmura and Kashiwadani (2018)). Indeed, the distributions of these two taxa follow the predictions of the species pair hypothesis, wherein the species with vegetative diaspores has a much larger range compared to that of the strictly sexual species that lacks vegetative diaspores (Poelt 1970; Mattsson and Lumbsch 1989).

In our analyses, sequences of Loxospora elatina s.str. were intermingled with L. ochrophaea within the same clade (Fig. 1). Six different nuITS haplotypes were found in these species which differed up to three nucleotide substitutions between each other (Fig. 2). The most common haplotype was found in 20 specimens of L. elatina collected in Poland, Switzerland and two geographically distant locations in Appalachian eastern North America (sample L. elatina 22 is from New York, U.S.A. and sample L. elatina 23 is from North Carolina, U.S.A.; Table 1). Moreover, in the nuITS haplotype network, four samples of L. elatina and four samples of L. ochrophaea share the same haplotype (Fig. 2). While these samples were all collected in eastern North America, they include samples of each species that were collected at very distant locations (e.g. sample L. ochrophaea 3 is from coastal Maine, U.S.A., while samples L. ochrophaea 5, 6 and 7 are from Appalachian North Carolina and Tennessee, U.S.A.; sample L. elatina 20 is from coastal Maine, U.S.A, sample L. elatina 21 is from the Great Lakes of Michigan, U.S.A., while samples L. elatina 26 and L. elatina 27 are from Newfoundland, Canada; Table 1). Interestingly, a sample of each species was collected in close proximity at the same locality (samples L. ochrophaea 3 and L. elatina 20, both from the same location on Roque Island in Maine, U.S.A.; Table 1). Given their phenotypic similarity and the lack of resolution using nuITS rDNA, the molecular barcoding marker for fungi, it is possible that L. elatina and L. ochrophaea may represent variants of a single species. On the other hand, it is also possible that our data were insufficient to distinguish between two closely-related species and more detailed study would allow to find differences between them. Recently, in the case of Usnea antarctica Du Rietz and U. aurantiacoatra (Jacq.) Bory, RADseq and comparative genomics supported recognition of a species pair that had previously been proposed to be synonyms (Grewe et al. 2018). Given that the species have strongly divergent distributions and that they are morphologically distinct when they co-occur, we refrain from synonymising them at this time.

Taxonomy

Chicitaea Guzow-Krzem., Kukwa & Lendemer, gen. nov.

MycoBank No: 851779

Diagnosis

Differs from Loxospora s.str. in the presence of 2’-O-methylperlatolic acid (vs. thamnolic acid), asci without an amyloid apical dome (vs. asci with a uniformly amyloid apical dome) and simple, broadly ellipsoid, straight or slightly bent ascospores (known only in the type species; vs. transversely septate ascospores).

Generic type

Chicitaea lecanoriformis (Lumbsch, A.W. Archer & Elix) Guzow-Krzem., Kukwa & Lendemer.

Etymology

The generic epithet honours Chicita F. Culberson (1931–2023), Senior Research Scientist at Duke University, U.S.A., for her foundational, pioneering and lifelong contributions to the fields of lichen chemistry and lichen taxonomy. In addition to establishing standardised protocols to study lichen secondary chemistry that have been routinely used by workers worldwide for more than half a century, she was an influence for generations of lichenologists with whom she generously shared her knowledge and experience.

Description

Thallus corticolous, pale grey-green to olive-grey, thin or thick, surface smooth to verrucose, sorediate, isidate or without vegetative propagules. Apothecia known in one species, lecanorine, up to 1.5 mm diam., sessile, concave. Thalline margin present, scabrid when young, later entire, dentate, persistent, often flexuose. Disc dark reddish-brown to black, epruinose. Hymenium colourless, inspersed with infrequent oil droplets. Paraphyses simple, unbranched. Hypothecium colourless or pale yellow-brown. Asci claviform to obovate, I–, KI+ slightly blue-green, damaged asci amyloid. Ascospores 6–8 per ascus, broadly ellipsoid, straight or slightly bent, with a single thin wall. Pycnidia found in one species, immersed, visible as minute black dots. Conidia bacilliform.

Chemistry

2’-O-methylperlatolic acid (major) and perlatolic acid (minor or trace; reported only from Chicitaea lecanoriformis). Spot tests: cortex K–, C–, KC–, P–, UV–; medulla and soralia K–, C–, KC–, P–, UV+ white.

For morphology of Chicitaea species, see Lumbsch et al. (2007), Papong et al. (2009), Lendemer (2013), Guzow-Krzemińska et al. (2018) and Fig. 6.

Figure 6. 

Morphology of two species of Chicitaea A Thallus of Ch. confusa on tree trunk (taken by J. Hollinger in the field) B thallus of Ch. cristinae on tree trunk (taken by D. Kubiak in the field) C, D Thalli of Ch. cristinae showing soralia (paratypes of L. cristinae C UGDA L-22396 D UGDA L-20385). Scale bars: 1 mm (C, D).

Chicitaea assateaguensis (Lendemer) Guzow-Krzem., Kukwa & Lendemer, comb. nov.

MycoBank No: 851780

Loxospora assateaguensis Lendemer, J. North Carolina Acad. Sci. 129(3): 74 (2013). Basionym.

Chicitaea confusa (Lendemer) Guzow-Krzem., Kukwa & Lendemer, comb. nov.

MycoBank No: 851781

Loxospora confusa Lendemer, J. North Carolina Acad. Sci. 129(3): 77 (2013). Basionym.

Chicitaea cristinae (Guzow-Krzem., Łubek, Kubiak & Kukwa) Guzow-Krzem., Kukwa & Lendemer, comb. nov.

MycoBank No: 851782

Loxospora cristinae Guzow-Krzem., Łubek, Kubiak & Kukwa, in Guzow-Krzemińska, Łubek, Kubiak, Ossowska & Kukwa, Phytotaxa 348(3): 216 (2018). Basionym.

Chicitaea lecanoriformis (Lumbsch, A.W. Archer & Elix) Guzow-Krzem., Kukwa & Lendemer, comb. nov.

MycoBank No: 851783

Loxospora lecanoriformis Lumbsch, A.W. Archer & Elix, Lichenologist 39(6): 514 (2007). Basionym.

Loxospora A. Massal.

Ric. Auton. Lich. Crost.: 137 (1852).

Notes

Three species, L. cyamidia (Stirt.) Kantvilas, L. septata (Sipman & Aptroot) Kantvilas and L. solenospora (Müll. Arg.) Kantvilas (syn. Sarrameana tasmanica Vězda & Kantvilas), from the Southern Hemisphere have not been sequenced so far. However, they have ascospores similar in shape to other Loxospora spp. (although, in L. cyamidia and L. solenospora, they are rarely septate), asci with an amyloid apical dome and contain thamnolic acid (although L. solenospora may sometimes contain additionally gyrophoric acid or only the latter substance) (Kantvilas 2000, 2004). Given the morphological and chemical similarities to the type species L. elatina and other members of Loxospora s.str., they are treated here as belonging to this genus. Loxospora isidiata Kalb (described from the Philippines) and L. ochrophaeoides Kalb & Hafellner (described from Madeira), introduced by Kalb and Hafellner (1992) and L. glaucomiza (Nyl.) Kalb & Staiger (described from Japan) treated by Staiger and Kalb (1995) are also treated as belonging to Loxospora s.str. due to the production of thamnolic acid.

The name Loxospora pustulata (Brodo & W.L. Culb.) Egan was applied to a common and widespread pustulose-sorediate crustose species with thamnolic acid that occurs throughout eastern North America (Brodo and Culberson 1986; Lendemer and Noell 2018). The discovery of fertile material led to its being transferred to the genus Lepra Scop. as L. pustulata (Brodo & W.L. Culb.) Lendemer & R.C. Harris (Lendemer and Harris 2017).

Loxospora chloropolia (Erichsen) Ptach-Styn, Guzow-Krzem., Tønsberg & Kukwa, comb. nov.

MycoBank No: 851745
Fig. 7

Pertusaria chloropolia Erichsen, in Zahlbr., Rabenh. Krypt.-Fl. Ed. 2, 9(5[1]): 645 (1935[1936]). Basionym. Type. [Switzerland. Jura Mts:] Mont de Baulmes, 1100 m elev., [on Abies] 1934, Meylan (lectotype: HBG!, selected here; MycoBank No: MBT 10017691).

Pertusaria chloropolia f. cana Erichsen, in Zahlbr., Rabenh. Krypt.-Fl. Ed. 2, 9(5[1]): 646 (1935[1936]). Syn. nov. Type. [Ukraine. Carpathians:] Lopušanka, 500 m elev., [corticolous] 1931, Nádvorník (lectotype: HBG!, selected here; MycoBank No: MBT 10017692).

Typifications

The type specimen of Pertusaria chloropolia consists of thin, continuous thallus with discrete soralia forming from flat parts of thalli or from slightly convex areoles and contains thamnolic acid (detected by I. M. Brodo). In the type specimen of P. chloropolia f. cana, soralia are partly damaged, but, similarly to the type of P. chloropolia, the type consists of thin, continuous thallus with discrete soralia and contains thamnolic acid (detected by I. M. Brodo). In the protologue of P. chloropolia f. cana, the type locality was cited as ‘Tschechoslowakei: Karpathoruβland, Lopusanka’ (Erichsen 1935), but to our knowledge, it is now located in western Ukraine. The name ‘Lopusanka’ is a spelling error as, on the label, it is ‘Lopušanka’.

Figure 7. 

Morphology of Loxospora chloropolia (for details of specimens, see Table 1, Suppl. material 3) A−C smooth to folded thalli with mostly discrete soralia (A UGDA L-60095 B UGDA L-31983 C UGDA L-54253) D, E thalli with folded to areolate areas (D UGDA L-60093 E UGDA L-60096) F apothecia with sorediate margins (Ellis L456, E 01043201). Scale bars: 1 mm.

Erichsen (1935) cited only one locality for both names. However, the lectotypes are selected, because it is not known if, at the time of describing both taxa, C. F. E. Erichsen used only one element upon which the validating descriptions were based (Art. 9.3; Turland et al. (2018); see also McNeill (2014)).

Description

Thallus crustose, grey, matt or more often shiny, thin, continuous, slightly folded, cracked to cracked areolate. Areoles flat or rarely convex, not constricted at the base. Soralia whitish to greenish-grey, flat or more often convex, rounded or irregular, mostly discrete and separated, bursting from flat parts of thallus or from areoles, sometimes crowded and the neighbouring soralia more or less fused, but still the boundaries often visible between them or, very rarely, soralia fused into irregular patches in older parts of thallus. Soredia up to 50 µm in diam., often in consoredia up to 100 µm wide. Apothecia very rare, single, up to 1.2 mm in diam. Thalline margin present, esorediate or partly to completely sorediate. Excipulum proporium not evident. Disc reddish-brown, thinly white pruinose. Hymenium up to 100 µm high. Epihymenium straw-brown (K+ pale reddish-brown), with dense granules dissolving in K. Paraphyses not capitate, sometimes anastomosing. Asci 8-spored, with uniformly KI+ blue apical dome. Ascospores 0–3(–5)-septate, spiralled in asci, hyaline, fusiform, curved, 35–48 × 5–7 µm. Pycnidia not known. Photobiont chlorococcoid, cells up to 12 µm in diam.

Chemistry

Thamnolic acid (major), elatinic acid (minor, trace or absent) and squamatic acid (trace or absent). Spot tests: cortex, apothecial section, soralia and medulla K+ lemon-yellow, Pd+ yellow to orange, UV–.

Notes

Loxospora chloropolia differs from L. elatina in having a thin, continuous to cracked-areolate thallus with mostly regular soralia, which are discrete at least in young parts of thalli (Fig. 7). Areoles in the central parts of larger thalli may become convex (in few specimens; Fig. 7E), but are never tuberculate or isidia-like as in L. elatina (Fig. 8). Soralia develop by breaking the cortex and are mostly regular, discrete and convex, rarely flat. Sometimes the neighbouring soralia are fused; however it is still possible to detect the boundaries between individual soralia in most cases. Loxospora elatina, in contrast, has thalli which are, in most cases, tuberculate (sometimes only locally) or with areoles that resemble coarse isidia (Fig. 8). Tuberculate areoles are grouped or dispersed and constricted at the base. Soralia develop from the top of the tuberculate or pustulate areoles and are never regular as in L. chloropolia and, in most thalli, form granular-sorediate patches covering large areas (sometimes almost the entire thallus is covered with soredia; Fig. 8D). Moreover, these species differ in several nucleotide positions in both nuITS rDNA and RPB1 markers (Tables 2, 3).

Figure 8. 

Morphology of Loxospora elatina (for details of specimens, see Table 1, Suppl. material 3) A, B thalli with tuberculate areoles and irregular and partly fused soralia (A UGDA L-47757 B UGDA L- 47762) C thallus with soralia bursting from areoles and later fused (UGDA L-47761) D soralia covering most parts of the thallus (UGDA L-47760) E, F apothecia with sorediate or esorediate margins (O L-97759). Scale bars: 1 mm.

Loxospora chloropolia can be confused with sorediate species of Chicitaea, but they contain 2’-O-methylperlatolic acid and the thallus is K negative (Lendemer 2013; Guzow-Krzemińska et al. 2018). Lecanora norvegica Tønsberg is another similar species, which occurs on similar substrates, but it contains atranorin and protocetraric acid (Tønsberg 1992; Kukwa and Kubiak 2007).

Habitat and distribution

The species is corticolous and grows in deciduous or mixed forests on bark of Abies alba, Acer pseudoplatanus, Alnus glutinosa, Betula spp., Corylus avellana, Fagus sylvatica, Juniperus communis, Larix decidua, Picea abies, Pinus sylvestris, Populus tremula, Quercus spp., Sorbus aucuparia and Tilia cordata. So far, it is known from Czechia, Great Britain, Latvia, Norway, Poland, Sweden, Switzerland (type locality) and Ukraine.

Specimens examined

See Suppl. material 3.

Loxospora elatina (Ach.) A. Massal.

Fig. 8

Ric. Auton. Lich. Crost.: 138 (1852). – Lecanora elatina Ach., Lich. Univ.: 387 (1810).

Type

Lusatia, [corticolous], Mosig? (lectotype: H-ACH 1199A!, selected here; MycoBank No: MBT 10017693).

Typification

In the protologue of Lecanora elatina, Acharius (1810) cited the locality as “Habitat in cortice Pini Abietis Silesiae. Mosig”. The type collection in H-ACH consists of four pieces of bark covered with thalli of Loxospora elatina. Three (H-ACH 1199A, 1199B and 1199C) are annotated “Lusatia” with a very faint pencil note next to H-ACH 1199A deciphered as possibly “Mosig” (this note probably not added by Acharius himself as the handwriting in pencil differs from all notes made in ink). The fourth specimen, H-ACH 1199D is annotated “Germania. Schrader”. According to the label added in modern times and attached to the type collection, Lusatia was part of Silesia, therefore, the three specimens annotated “Lusatia” can be considered original material; however, it is impossible to verify whether all three were collected by Mosig. Nevertheless, the largest sample (H-ACH 1199A) is fertile and apothecia were mentioned in the diagnosis, therefore it is selected as lectotype. The Acharius collection in BM also contains a specimen of Lecanora elatina, however without any locality details; therefore, it cannot be considered as an isolectotype.

Description

Thallus crustose, grey, matt, thin (at the margin) or more usually thick, continuous or cracked, slightly folded at least the margins, later areolate-verrucose to tuberculate (sometimes only part of the thallus tuberculate). Areoles usually strongly convex, tuberculate and constricted at the base or resembling coarse isidia, sometimes pustulate, dispersed or aggregated. Soralia whitish to greenish-grey, flat or more often convex, rounded or more often irregular, bursting from the top of areoles, often fused and tending to coalesce locally on the thallus or covering most parts of the thallus, sometimes developing from irregular cracks of the thallus. Soredia up to 60 µm in diam., often in consoredia up to 120 µm wide. Apothecia rare, up to 1.2 mm in diam., single or grouped up to five apothecia. Thalline margin present in young apothecia, smooth to flexuose, verrucose or dentate, sometimes with small soralia, later excluded. Excipulum proprium thin, flesh-coloured to white grey in surface view, orange-brown in section, smooth or more often flexuous, up to 100 µm wide in section. Disc reddish-brown, thinly white pruinose. Hymenium up to 125 µm high. Epihymenium straw-brown (K+ pale reddish-brown), with dense granules dissolving in K. Paraphyses not capitate, sometimes anastomosing. Asci 8-spored, with uniformly KI+ blue apical dome. Ascospores 0–5-septate, spiralled in asci, hyaline, fusiform, curved, 35–53(–64) × 4.5–6.5(–7) µm. Pycnidia not known. Photobiont chlorococcoid, cells up to 12 µm in diam.

Chemistry

Thamnolic acid (major), elatinic acid (minor, trace or absent) and squamatic acid (trace or absent). Spot tests: cortex, apothecial section, soralia and medulla K+ lemon-yellow, Pd+ yellow to orange, UV–.

Notes

Loxospora elatina is similar to L. chloropolia; for differences, see under that species. The name (often as Haematomma elatinum (Ach.) A. Massal.) was often used in the past for the non-sorediate specimens currently referred to as L. ochrophaea. Both species, as mentioned above, are indeed morphologically (except for the production of soralia) and chemically almost identical and may represent the same species.

Loxospora ochrophaeoides, when described, was compared with L. ochrophaea and characterised as differing only in the presence of semi-globose soralia (Kalb and Hafellner 1992). Whether this taxon is distinct or synonymous with L. elatina or L. chloropolia, needs further studies using molecular techniques.

Some specimens of L. elatina were found to be determined as Ochrolechia androgyna (Hoffm.) Arnold, but that species and the recently segregated O. bahusiensis H. Magn. and O. mahluensis Räsänen differ in the production of gyrophoric acid and simple, larger ascospores (Tønsberg 1992; Kukwa 2011).

Habitat and distribution

The species is corticolous or lignicolous and grows on bark of various coniferous and deciduous tree in forests. The species was reported from many countries in the Northern Hemisphere; however, as some records may belong to L. chloropolia, its distribution needs revision. In the course of this study, we examined specimens from Austria, Czechia, Estonia, Finland, Latvia, Lithuania, Poland, Slovakia, United Kingdom, Ukraine and USA.

Specimens of Loxospora elatina and L. ochrophaea examined

See Suppl. material 3.

Acknowledgements

The authors express gratitude to Curators of BG, BILAS, E, H, O Herbaria and Dr. Jiří Maliček for the loan of Loxospora spp. specimens, Professor Teuvo Ahti for a discussion of the Acharius collection of Lecanora elatina and Professor H. Thorsten Lumbsch for the information on the sequences of Loxospora lecanoriformis. Our friends, Dr. Adam Flakus and Dr. Emilia A. Ossowska are thanked for their help with taking pictures of species of Loxospora s.l. and Dr. Rafał Szymczyk, for sending us several fresh collections of Loxospora. Jason Hollinger and Dr. Dariusz Kubiak are thanked for allowing us to use pictures of two Chicitaea species. Author Lendemer’s contribution is part of US NSF DEB Award #2115190.

Additional information

Conflict of interest

The authors have declared that no competing interests exist.

Ethical statement

No ethical statement was reported.

Funding

No funding was reported.

Author contributions

Łucja Ptach-Styn: conceptualization, molecular and phylogenetic analyses, identification of secondary metabolites, manuscript writing and editing; Beata Guzow-Krzemińska: conceptualization, molecular and phylogenetic analyses, manuscript writing and editing; James Lendemer: conceptualization, identification of specimens, manuscript writing and editing; Tor Tønsberg: identification of secondary metabolites, manuscript writing and editing: Martin Kukwa: conceptualization, identification of secondary metabolites and revision of specimens, manuscript writing and editing.

Author ORCIDs

Łucja Ptach-Styn https://orcid.org/0000-0003-2027-1636

Beata Guzow-Krzemińska https://orcid.org/0000-0003-0805-7987

James C. Lendemer https://orcid.org/0000-0003-1186-0711

Martin Kukwa https://orcid.org/0000-0003-1560-909X

Data availability

All of the data that support the findings of this study are available in the main text or Supplementary Information.

References

  • Acharius E (1810) Lichenographia Universalis. J. F. Danckwerts, Göttingen, 1–696. [+ Tab. XIV]
  • Berger F, Breuss O, Maliček J, Türk R (2018) Lichens in the primeval forest areas ‘Großer Urwald’ and ‘Kleiner Urwald’ (Rothwald, ‘Dürrenstein Wilderness Area’, Lower Austria, Austria). Herzogia 31(1): 716–731. https://doi.org/10.13158/heia.31.1.2018.716
  • Brodo IM, Culberson WL (1986) Haematomma pustulatum, sp. nov. (Ascomycotina, Haematommataceae): A common, widespread, sterile lichen of eastern North America. The Bryologist 89(3): 203–205. https://doi.org/10.2307/3243284
  • Buschbom J, Mueller GM (2006) Testing “species pair” hypotheses: Evolutionary processes in the lichen-forming species complex Porpidia flavocoerulescens and Porpidia melinodes. Molecular Biology and Evolution 23(3): 574–586. https://doi.org/10.1093/molbev/msj063
  • Chernomor O, von Haeseler A, Minh BQ (2016) Terrace aware data structure for phylogenomic inference from supermatrices. Systematic Biology 65(6): 997–1008. https://doi.org/10.1093/sysbio/syw037
  • Crespo A, Pérez-Ortega S (2009) Cryptic species and species pairs in lichens: A discussion on the relationship between molecular phylogenies and morphological characters. Anales del Jardin Botanico de Madrid 66(1): 71–81. https://doi.org/10.3989/ajbm.2225
  • Ekman S, Tønsberg T (2002) Most species of Lepraria and Leproloma form a monophyletic group closely related to Stereocaulon. Mycological Research 106(11): 1262–1276. https://doi.org/10.1017/S0953756202006718
  • Erichsen CFE (1935) [1936] Pertusariacae. In: Zahlbruckner A (Ed.) Dr. L. Rabenhorsts Kryptogamenflora von Deutchland, Österreich und der Schweiz. Leipzig, Akademische Verlagsgesellschaft 9(5)[1], 321–701.
  • Ertz D, Guzow-Krzemińska B, Thor G, Łubek A, Kukwa M (2018) Photobiont switching causes changes in the reproduction strategy and phenotypic dimorphism in the Arthoniomycetes. Scientific Reports 8(1): 4952. https://doi.org/10.1038/s41598-018-23219-3
  • Galloway DJ (2007) Flora of New Zealand. Lichens. Revised Second Edition Including Lichen-Forming and Lichenicolous Fungi. Vol. 1. Manaaki Whenua Press, Lincoln, Vol. 1, [i–cxxx +] 1–1006.
  • Gouy M, Guindon S, Gascuel O (2010) SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution 27(2): 221–224. https://doi.org/10.1093/molbev/msp259
  • Grewe F, Lagostina E, Wu H, Printzen C, Lumbsch HT (2018) Population genomic analyses of RAD sequences resolves the phylogenetic relationship of the lichen-forming fungal species Usnea antarctica and Usnea aurantiacoatra. MycoKeys 43: 91–113. https://doi.org/10.3897/mycokeys.43.29093
  • Guzow-Krzemińska B, Węgrzyn G (2000) Potential use of restriction analysis of PCR-amplified DNA fragments in taxonomy of lichens. Mycotaxon 76: 305–313.
  • Guzow-Krzemińska B, Malíček J, Tønsberg T, Oset M, Łubek A, Kukwa M (2017) Lecanora stanislai, a new, sterile, usnic acid containing lichen species from Eurasia and North America. Phytotaxa 329(3): 201–211. https://doi.org/10.11646/phytotaxa.329.3.1
  • Guzow-Krzemińska B, Łubek A, Kubiak D, Ossowska E, Kukwa M (2018) Phylogenetic approaches reveal a new sterile lichen in the genus Loxospora (Sarrameanales, Ascomycota) in Poland. Phytotaxa 348(3): 211–220. https://doi.org/10.11646/phytotaxa.348.3.4
  • Guzow-Krzemińska B, Sérusiaux E, van den Boom PPG, Brand AM, Launis A, Łubek A, Kukwa M (2019) Understanding the evolution of phenotypical characters in the Micarea prasina group (Pilocarpaceae) and descriptions of six new species within the group. MycoKeys 57: 1–30. https://doi.org/10.3897/mycokeys.57.33267
  • Hafellner J (1984) Studien in Richtung einer naturlicheren Gliederung der Sammelfamilien Lecanoraceae und Lecideaceae. Beiheft zur Nova Hedwigia 79: 241–371.
  • Hafellner J, Türk R (2016) Die lichenisierten Pilze Österreichs – eine neue Checkliste der bisher nachgewiesenen Taxa mit Angaben zu Verbreitung und Substratökologie. Stapfia 104(1): 1–216.
  • Hoang DT, Chernomor O, Von Haeseler A, Minh BQ, Vinh LS (2018) UFBoot2: Improving the ultrafast bootstrap approximation. Molecular Biology and Evolution 35(2): 518–522. https://doi.org/10.1093/molbev/msx281
  • Hodkinson BP, Lendemer JC (2013) Next-generation sequencing reveals sterile crustose lichen phylogeny. Mycosphere: Journal of Fungal Biology 4(6): 1028–1039. https://doi.org/10.5943/mycosphere/4/6/1
  • Kalyaanamoorthy S, Minh B, Wong T, von Haeseler A, Jermiin LS (2017) ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods 14(6): 587–589. https://doi.org/10.1038/nmeth.4285
  • Kantvilas G (2004) Sarrameanaceae. In: McCarthy PM, Mallett K (Eds) Flora of Australia. Volume 56A, Lichens 4. CSIRO Publishing, Melbourne, 74–77.
  • Kelly LJ, Hollingsworth PM, Coppins BJ, Ellis CJ, Harrold P, Tosh J, Yahr R (2011) DNA barcoding of lichenized fungi demonstrates high identification success in a floristic context. The New Phytologist 191(1): 288–300. https://doi.org/10.1111/j.1469-8137.2011.03677.x
  • Kukwa M (2011) The lichen genus Ochrolechia in Europe. Fundacja Rozwoju Uniwersytetu Gdańskiego, Gdańsk, 1–309.
  • Kukwa M, Kubiak D (2007) Six sorediate crustose lichens new to Poland. Mycotaxon 102: 155–164.
  • Kukwa M, Pérez-Ortega S (2010) A second species of Botryolepraria from the Neotropics and the phylogenetic placement of the genus within Ascomycota. Mycological Progress 9(3): 345–351. https://doi.org/10.1007/s11557-009-0642-0
  • Kukwa M, Kosecka M, Jabłońska A, Flakus A, Rodriguez-Flakus P, Guzow-Krzemińska B (2023) Pseudolepraria, a new leprose genus revealed in Ramalinaceae (Ascomycota, Lecanoromycetes, Lecanorales) to accommodate Lepraria stephaniana. MycoKeys 96: 97–112. https://doi.org/10.3897/mycokeys.96.98029
  • Laundon JR (1963) The taxonomy of sterile crustaceous lichens in the British Isles. 2. Corticolous and lignicolous species. Lichenologist (London, England) 2(2): 101–151. https://doi.org/10.1017/S002428296300013X
  • Lendemer JC (2013) Two new sterile species of Loxospora (Sarrameanaceae: Lichenized Ascomycetes) from the Mid-Atlantic Coastal Plane. Journal of the North Carolina Academy of Science 129(3): 71–81. https://doi.org/10.7572/2167-5880-129.3.71
  • Lendemer JC, Harris RC (2014) Studies in lichens and lichenicolous fungi – No. 18: Resolution of three names introduced by Degelius and Magnusson based on material from the Great Smoky Mountains. Castanea 79(2): 106–117. https://doi.org/10.2179/14-006
  • Lendemer JC, Harris RC (2017) Nomenclatural changes for North American members of the Variolaria-group necessitated by the recognition of Lepra (Pertusariales). The Bryologist 120(2): 182–189. https://doi.org/10.1639/0007-2745-120.2.182
  • Lendemer JC, Noell N (2018) Delmarva Lichens: An illustrated manual. Memoirs of the Torrey Botanical Society 28: 1–386.
  • Lücking R, Hodkinson BP, Leavitt SD (2017 [2016]) The 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota – Approaching one thousand genera. The Bryologist 119(4): 361–416. https://doi.org/10.1639/0007-2745-119.4.361
  • Lumbsch HT, Archer AW, Elix JA (2007) A new species of Loxospora (lichenized Ascomycota: Sarrameanaceae) from Australia. Lichenologist (London, England) 39(6): 509–517. https://doi.org/10.1017/S0024282907007153
  • Malíček J, Palice Z, Vondrák J, Łubek A, Kukwa M (2018) Bacidia albogranulosa (Ramalinaceae, lichenized Ascomycota), a new sorediate lichen from European old-growth forests. MycoKeys 44: 51–62. https://doi.org/10.3897/mycokeys.44.30199
  • Massalongo AB (1852) Ricerche sull’autonomia dei licheni crostosi e materiali pella loro naturale ordinazione. Tipografia di Frizierio, Verona, 1–207.
  • Matheny PB, Liu YJ, Ammirati JF, Hall BD (2002) Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales). American Journal of Botany 89(4): 688–698. https://doi.org/10.3732/ajb.89.4.688
  • Miadlikowska J, Schoch CL, Kageyama SA, Molnar K, Lutzoni F, McCune B (2011) Hypogymnia phylogeny, including Cavernularia, reveals biogeographic structure. The Bryologist 114(2): 392–400. https://doi.org/10.1639/0007-2745-114.2.392
  • Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees in Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010, New Orleans, LA, 1–8. https://doi.org/10.1109/GCE.2010.5676129
  • Nguyen LT, Schmidt HA, Von Haeseler A, Minh BQ (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32(1): 268–274. https://doi.org/10.1093/molbev/msu300
  • Ohmura Y (2020) Usnea nipparensis and U. sinensis form a ‘species pair’ presuming morphological, chemical and molecular phylogenetic data. Plant and Fungal Systematics 65(2): 265–271. https://doi.org/10.35535/pfsyst-2020-0023
  • Ohmura Y, Kashiwadani H (2018) Checklist of lichens and allied fungi of Japan. National Museum of Nature and Science Monographs 49: 1–140.
  • Onuț-Brännström I, Benjamin M, Scofield DG, Heiðmarsson S, Andersson MGI, Lindström ES, Johannesson H (2018) Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: Evidence from high-throughput sequencing. Scientific Reports 8(1): 4406. https://doi.org/10.1038/s41598-018-22470-y
  • Orange A, James PW, White FJ (2001) Microchemical methods for the identification of lichens. British Lichen Society, London, 1–101.
  • Papong K, Boonpragob K, Lumbsch HT (2009) Additional lichen records from Thailand 1. Loxospora lecaniformis (Sarrameanaceae). Australasian Lichenology 65: 50–51.
  • Poelt J (1970) Das Konzept der Artenpaare bei den Flechten. Vortrage aus dem Gesamtgebiet der Botanik, N.F. 4: 187–198.
  • Sanders WB (2014) Complete life cycle of the lichen fungus Calopadia puiggarii (Pilocarpaceae, Ascomycetes) documented in situ: Propagule dispersal, establishment of symbiosis, thallus development, and formation of sexual and asexual reproductive structures. American Journal of Botany 101(11): 1836–1848. https://doi.org/10.3732/ajb.1400272
  • Sanderson NA, Brightman BJ, Brightman F (2008) Loxospora Massal. (1952). In: Smith CW, Aptroot A, Coppins BJ, Fletcher A, Gilbert OL, James PW, Wolseley PA (Eds) The Lichens of Great Britain and Ireland. British Lichen Society, London, 564.
  • Sela I, Ashkenazy H, Katoh K, Pupko T (2015) GUIDANCE2: Accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters. Nucleic Acids Research 43(W1): W7–W14. https://doi.org/10.1093/nar/gkv318
  • Staiger B, Kalb K (1995) Haematomma-studien. I. Die Flechtengattung Haematomma. Bibliotheca Lichenologica 59: 1–198.
  • Stenroos S, Velmala S, Pykälä J, Ahti T (2016) Lichens of Finland. Norrlinia 30: 1–896.
  • Stiller JW, Hall BD (1997) The origin of red algae: Implications for plastid evolution. Proceedings of the National Academy of Sciences of the United States of America 94(9): 4520–4525. https://doi.org/10.1073/pnas.94.9.4520
  • Tuckerman E (1848) A synopsis of the lichens of New England, the Northern United States and British America. Proceedings of the American Academy of Arts and Sciences 1: 195–285. https://doi.org/10.5962/bhl.title.51533
  • Turland NJ, Wiersema JH, Barrie FR, Greuter W, Hawksworth DL, Herendeen PS, Knapp S, Kusber W-H, Li D-Z, Marhold K, May TW, McNeill J, Monro AM, Prado J, Price MJ, Smith GF [Eds] (2018) International Code of Nomenclature for algae, fungi, and plants (Shenzhen Code) adopted by the Nineteenth International Botanical Congress Shenzhen, China, July 2017. Regnum Vegetabile 159, 254 pp. https://doi.org/10.12705/Code.2018
  • Urbanavichus G (2010) A checklist of the lichen flora of Russia. Nauka, St. Petersburg, 1–194.
  • Urbanavichus G, Vondrák J, Urbanavichene I, Palice Z, Maliček J (2020) Lichens and allied non-lichenized fungi of virgin forests in the Caucasus State Nature Biosphere Reserve (Western Caucasus, Russia). Herzogia 33(1): 90–138. https://doi.org/10.13158/heia.33.1.2020.90
  • Werth S, Scheidegger C (2012) Congruent genetic structure in the lichen-forming fungus Lobaria pulmonaria and its green-algal photobiont. Molecular Plant-Microbe Interactions 25(2): 220–230. https://doi.org/10.1094/MPMI-03-11-0081
  • Westberg M, Moberg R, Myrdal M, Nordin A, Ekman S (2021) Santesson’s Checklist of Fennoscandian Lichen-Forming and Lichenicolous Fungi. Uppsala University, Museum of Evolution, Uppsala, 1–933.
  • White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innes MA, Gelfand DH, Sninsky JJ, White TJ (Eds) PCR Protocols: A Guide to Methods and Applications. Academic Press, Elsevier, 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
  • Yakovchenko LS, Vondrák J, Ohmura Y, Korchikov ES, Vondrákova OS, Davydov EA (2017) Candelariella blastidiata sp. nov. (Ascomycota, Candelariaceae) from Eurasia and North America, and a key for grey thalli Candelariella. Lichenologist (London, England) 49(2): 117–126. https://doi.org/10.1017/S0024282917000020
  • Zoller S, Scheidegger C, Sperisen C (1999) PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. Lichenologist (London, England) 31(5): 511–516. https://doi.org/10.1006/lich.1999.0220

Supplementary materials

Supplementary material 1 

Conditions for each set of primers used in PCR

Łucja Ptach-Styn, Beata Guzow-Krzemińska, James C. Lendemer, Tor Tønsberg, Martin Kukwa

Data type: docx

This dataset is made available under the Open Database License (http://opendatacommons.org/licenses/odbl/1.0/). The Open Database License (ODbL) is a license agreement intended to allow users to freely share, modify, and use this Dataset while maintaining this same freedom for others, provided that the original source and author(s) are credited.
Download file (15.56 kb)
Supplementary material 2 

Sequences obtained from GenBank and used in phylogenetic analyses

Łucja Ptach-Styn, Beata Guzow-Krzemińska, James C. Lendemer, Tor Tønsberg, Martin Kukwa

Data type: xlsx

Explanation note: Samples marked with an asterisk in herbarium column were revised by authors.

This dataset is made available under the Open Database License (http://opendatacommons.org/licenses/odbl/1.0/). The Open Database License (ODbL) is a license agreement intended to allow users to freely share, modify, and use this Dataset while maintaining this same freedom for others, provided that the original source and author(s) are credited.
Download file (16.53 kb)
Supplementary material 3 

Specimens of Loxospora chloropolia, L. elatina and L. ochrophaea revised for this study

Łucja Ptach-Styn, Beata Guzow-Krzemińska, James C. Lendemer, Tor Tønsberg, Martin Kukwa

Data type: xlsx

This dataset is made available under the Open Database License (http://opendatacommons.org/licenses/odbl/1.0/). The Open Database License (ODbL) is a license agreement intended to allow users to freely share, modify, and use this Dataset while maintaining this same freedom for others, provided that the original source and author(s) are credited.
Download file (85.53 kb)
login to comment