Research Article |
Corresponding author: Martin Kukwa ( martin.kukwa@ug.edu.pl ) Academic editor: Thorsten Lumbsch
© 2024 Łucja Ptach-Styn, Beata Guzow-Krzemińska, James C. Lendemer, Tor Tønsberg, Martin Kukwa.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Ptach-Styn Ł, Guzow-Krzemińska B, Lendemer JC, Tønsberg T, Kukwa M (2024) Phylogeny of the genus Loxospora s.l. (Sarrameanales, Lecanoromycetes, Ascomycota), with Chicitaea gen. nov. and five new combinations in Chicitaea and Loxospora. MycoKeys 102: 155-181. https://doi.org/10.3897/mycokeys.102.116196
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Loxospora is a genus of crustose lichens containing 13 accepted species that can be separated into two groups, based on differences in secondary chemistry that correlate with differences in characters of the sexual reproductive structures (asci and ascospores). Molecular phylogenetic analyses recovered these groups as monophyletic and support their recognition as distinct genera that differ in phenotypic characters. Species containing 2’-O-methylperlatolic acid are transferred to the new genus, Chicitaea Guzow-Krzem., Kukwa & Lendemer and four new combinations are proposed: C. assateaguensis (Lendemer) Guzow-Krzem., Kukwa & Lendemer, C. confusa (Lendemer) Guzow-Krzem., Kukwa & Lendemer, C. cristinae (Guzow-Krzem., Łubek, Kubiak & Kukwa) Guzow-Krzem., Kukwa & Lendemer and C. lecanoriformis (Lumbsch, A.W. Archer & Elix) Guzow-Krzem., Kukwa & Lendemer. The remaining species produce thamnolic acid and represent Loxospora s.str. Haplotype analyses recovered sequences of L. elatina in two distinct groups, one corresponding to L. elatina s.str. and one to Pertusaria chloropolia, the latter being resurrected from synonymy of L. elatina and, thus, requiring the combination, L. chloropolia (Erichsen) Ptach-Styn, Guzow-Krzem., Tønsberg & Kukwa. Sequences of L. ochrophaea were found to be intermixed within the otherwise monophyletic L. elatina s.str. These two taxa, which differ in contrasting reproductive mode and overall geographic distributions, are maintained as distinct, pending further studies with additional molecular loci. Lectotypes are selected for Lecanora elatina, Pertusaria chloropolia and P. chloropolia f. cana. The latter is a synonym of Loxospora chloropolia. New primers for the amplification of mtSSU are also presented.
Lichenised fungi, mtSSU, nuITS, phylogeny, RPB1, Sarrameanaceae, secondary metabolites, sorediate lichens, sterile lichens, taxonomy
Lichens are specialised fungi that associate in symbiotic relationships with photoautotrophic partners, termed photobionts, which are mainly represented by green microalgae or cyanobacteria (
Some species that produce lichenised vegetative diaspores are morphologically (except for the development of such diaspores) and chemically almost identical to the taxa that lack those structures and such cases are referred to as species pairs (
The genus Loxospora A. Massal. was described by
In summer 2021, while performing field lichen studies in northern Poland, we collected specimens resembling Loxospora elatina growing on bark of Alnus glutinosa in black alder forest. They contained thamnolic acid as the main secondary metabolite; however, the thallus was continuous to areolate, in contrast to the tuberculate thalli typically found in L. elatina (e.g.
Lichen material was studied from BG, BM, BILAS, E, HBG, H-ACH, NY, O, UGDA and herb. Maliček. Morphology was examined using a Nikon SMZ 800N stereomicroscope. Secondary lichen metabolites were studied by thin layer chromatography (TLC) (
Small pieces of thalli (approx. 2 mm2) were put into Eppendorf tubes. Then DNA was extracted using a GeneMATRIX Plant & Fungi DNA Purification Kit (EURX) or a modified CTAB method (
Specimen data and the GenBank accession numbers of newly-obtained sequences of the taxa used in the phylogenetic analyses. A dash provides information about lack of DNA sequence. For sequences obtained from GenBank, see Suppl. material
Species | Origin | Collection and herbarium | GenBank accession numbers | ||
---|---|---|---|---|---|
nuITS | mtSSU | RPB1 | |||
Chicitaea confusa 3 | U.S.A. North Carolina. Carteret Co. | Lendemer 35738 (NY-1885635) | PP080079 | PP080125 | – |
Chicitaea confusa 4 | U.S.A. North Carolina. Jones Co. | Lendemer 35691 (NY-1885682) | PP080080 | PP080126 | – |
Chicitaea confusa 5 | U.S.A. North Carolina. Carteret Co. | Lendemer 35485 (NY-1885425) | PP080081 | PP080127 | – |
Chicitaea aff. confusa 6 | U.S.A. North Carolina. Jones Co. | Lendemer 35655 (NY-1885717) | PP080082 | PP080128 | – |
Chicitaea confusa 7 | U.S.A. North Carolina. Craven Co. | Lendemer 35418 (NY-1885382) | PP080083 | PP080129 | – |
Chicitaea confusa 8 | U.S.A. North Carolina. Dare Co. | Lendemer 36747 (NY-1885847) | PP080084 | – | – |
Chicitaea confusa 9 | U.S.A. North Carolina. Tyrrell Co. | Lendemer 36584 (NY-1886010) | PP080085 | – | – |
Chicitaea confusa 10 | U.S.A. North Carolina. Washington Co. | Lendemer 36398 (NY-1886197) | PP080086 | – | – |
Chicitaea cristinae 10 | Poland. Carpathians, Bieszczady | Szymczyk s.n. (UGDA L-60232) | PP080087 | PP080130 | – |
Loxospora chloropolia 5 | Poland. Wybrzeże Słowińskie | Ptach-Styn, Kukwa Lox. 1 (UGDA L-60093) | PP080088 | – | PP083715 |
Loxospora chloropolia 6 | Poland. Wybrzeże Słowińskie | Ptach-Styn, Kukwa Lox. 2 (UGDA L-60094) | PP080089 | – | PP083716 |
Loxospora chloropolia 7 | Poland. Wybrzeże Słowińskie | Ptach-Styn, Kukwa Lox. 3 (UGDA L-60095) | PP080090 | – | PP083717 |
Loxospora chloropolia 8 | Poland. Wybrzeże Słowińskie | Ptach-Styn, Kukwa Lox. 4 (UGDA L-60096) | PP080091 | – | PP083718 |
Loxospora chloropolia 9 | Poland. Wybrzeże Słowińskie | Ptach-Styn, Kukwa Lox. 5 (UGDA L-60097) | PP080092 | – | – |
Loxospora chloropolia 10 | Poland. Wybrzeże Słowińskie | Ptach-Styn, Kukwa Lox. 6 (UGDA L-60098) | PP080093 | – | PP083720 |
Loxospora chloropolia 11 | Poland. Wybrzeże Słowińskie | Ptach et al. B1 (UGDA L-47764) | PP080094 | PP080131 | PP083721 |
Loxospora chloropolia 12 | Poland. Wybrzeże Słowińskie | Ptach et al. B2 (UGDA L-47765) | PP080095 | PP080132 | PP083714 |
Loxospora chloropolia 13 | Poland. Wybrzeże Słowińskie | Ptach et al. B3 (UGDA L-47766) | PP080096 | PP080133 | – |
Loxospora cismonica 2 | U.S.A. Tennessee. Blount Co. | Lendemer 44526 (NY-2438341) | PP080097 | – | – |
Loxospora cismonica 3 | Canada. New Brunswick. Charlotte Co. | Harris 61785 (NY-2712391) | PP080098 | PP080134 | – |
Loxospora cismonica 4 | Romania. Carpathians | Malíček 14899, Steinová (herb. Malíček) | – | PP080135 | – |
Loxospora elatina 6 | Poland. Carpathians, Bieszczady | Szymczyk s.n. (UGDA L-47757) | PP080099 | PP080136 | – |
Loxospora elatina 7 | Poland. Carpathians, Bieszczady | Szymczyk s.n. (UGDA L-47759) | PP080100 | PP080137 | – |
Loxospora elatina 8 | Poland. Carpathians, Bieszczady | Szymczyk s.n. (UGDA L-47760) | PP080101 | PP080138 | – |
Loxospora elatina 9 | Poland. Carpathians, Bieszczady | Szymczyk s.n. (UGDA L-47761) | PP080102 | PP080139 | – |
Loxospora elatina 10 | Poland. Carpathians, Bieszczady | Szymczyk s.n. (UGDA L-47762) | PP080103 | PP080140 | – |
Loxospora elatina 11 | Poland. Białowieski National Park | Szymczyk 883 (UGDA L-47745) | PP080104 | – | – |
Loxospora elatina 12 | Poland. Białowieski National Park | Szymczyk 1076 (UGDA L-47746) | PP080105 | PP080141 | – |
Loxospora elatina 13 | Poland. Białowieski National Park | Szymczyk 1085 (UGDA L-47747) | PP080106 | – | – |
Loxospora elatina 14 | Poland. Białowieski National Park | Szymczyk 1208 (UGDA L-47748) | PP080107 | – | – |
Loxospora elatina 15 | Poland. Białowieski National Park | Szymczyk 1255 (UGDA L-47750) | PP080108 | – | – |
Loxospora elatina 16 | Poland. Białowieski National Park | Szymczyk 1295 (UGDA L-47751) | PP080109 | PP080142 | – |
Loxospora elatina 17 | Poland. Równina Bielska | Szymczyk 1405 (UGDA L-47752) | PP080120 | – | – |
Loxospora elatina 18 | Poland. Równina Bielska | Szymczyk 1464 (UGDA L-47755) | PP080121 | – | – |
Loxospora elatina 19 | Estonia. Pärnu Co. | Kukwa 20481 (UGDA L-34378) | – | PP080147 | – |
Loxospora elatina 20 | U.S.A. Maine. Washington Co. | Harris 60661 (NY-1818725) | PP080119 | – | – |
Loxospora elatina 21 | U.S.A. Michigan Cheboygan Co. | Lendemer 45025 (NY-2439450) | PP080117 | – | – |
Loxospora elatina 22 | U.S.A. New York. Greene Co. | Lendemer 52960 (NY-3217196) | PP080114 | – | – |
Loxospora elatina 23 | U.S.A. North Carolina. Haywood Co. | Lendemer 53286 (NY-3218018) | PP080115 | – | – |
Loxospora elatina 24 | U.S.A. North Carolina. Macon Co. | Lendemer 46493 (NY-2795153) | – | PP080145 | – |
Loxospora elatina 25 | U.S.A. Tennessee. Sevier Co. | Tripp 5040 (NY-2358356) | PP080110 | PP080143 | – |
Loxospora elatina 26 | Canada. Newfoundland | McCarthy 4138 (NBM) | PP080122 | – | PP083719 |
Loxospora elatina 27 | Canada. Newfoundland | McCarthy 4139 (NBM) | PP080123 | – | – |
Loxospora elatina 28 | Russia. Caucasus Mts | Malíček et al. 10346 (herb. Malíček) | – | PP080146 | – |
Loxospora elatina 29 | Czechia. Southern Bohemia | Malíček 14726 (herb. Malíček) | – | PP080148 | – |
Loxospora elatina 30 | Czechia. Silesia | Malíček et al. 8916 (herb. Malíček) | – | PP080149 | – |
Loxospora elatina 31 | Russia. Caucasus Mts | Malíček et al. 10515 (herb. Malíček) | – | PP080150 | – |
Loxospora ochrophaea 3 | U.S.A. Maine. Washington Co. | Harris 60662 (NY-1818726) | PP080116 | – | – |
Loxospora ochrophaea 4 | U.S.A. North Carolina. Yancey Co. | Kraus 44 (NY-2607571) | PP080124 | – | – |
Loxospora ochrophaea 5 | U.S.A. North Carolina. Haywood Co. | Lendemer 45473 (NY-2440690) | PP080111 | – | – |
Loxospora ochrophaea 6 | U.S.A. Tennessee. Sevier Co. | Lendemer 47245 (NY-2795450) | PP080112 | PP080144 | – |
Loxospora ochrophaea 7 | U.S.A. Tennessee. Sevier Co. | Lendemer 46150 (NY-2606798) | PP080113 | PP091207 | – |
Loxospora ochrophaea 8 | U.S.A. Tennessee. Sevier Co. | Lendemer 45684 (NY-2441234) | PP080118 | – | – |
The newly-obtained sequences were trimmed using the Chromas programme (http://technelysium.com.au/wp/). All sequences were analysed using BLASTn search (
The Bayesian analysis was conducted using MrBayes 3.2.7a (
Sequences obtained from GenBank and used in phylogenetic analyses are listed in Suppl. material
Moreover, independent alignments of each marker for specimens of L. elatina, L. ochrophaea and L. chloropolia were prepared using Seaview software (
The representatives of the genus Loxospora s.l. are split into two highly-supported major clades (Fig.
IQ-tree based on a combined nuITS rDNA, mtSSU and RPB1 dataset for Loxospora s.l. The names of species are followed with sample number (see Table
Haplotype network showing relationships between nuITS rDNA sequences from Loxospora chloropolia, L. elatina and L. ochrophaea. The names of species are followed with sample numbers (see Table
Haplotype network showing relationships between RPB1 sequences from Loxospora chloropolia, L. elatina and L. ochrophaea. The names of species are followed with sample numbers (see Table
The specimens whose sequences were recovered in this latter group correspond morphologically to the type material of Pertusaria chloropolia Erichsen (≡ Lecanora chloropolia (Erichsen) Almb.), not to the type of Lecanora elatina Ach. (basionym of Loxospora elatina). Pertusaria chloropolia was synonymised with Loxospora elatina by
Variable positions in the alignment of nuITS rDNA marker of Loxospora chloropolia, L. elatina and L. ochrophaea. Variable characters are marked in bold, while diagnostic nucleotide position characters to distinguish L. chloropolia from both L. elatina and L. ochrophaea are marked with a gray background, including indels.
Sequence | Position in alignment | ||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
11 | 15 | 16 | 17 | 19 | 20 | 27 | 34 | 35 | 37 | 38 | 42 | 43 | 44 | 45 | 46 | 52 | 68 | 79 | 107 | 311 | 321 | 332 | 334 | 340 | 341 | 342 | 347 | 371 | 387 | 389 | 393 | 401 | 405 | 412 | 416 | 417 | 419 | 420 | 432 | 435 | 439 | 441 | |
L. chloropolia 1 | C | C | C | T | T | T | C | T | A | T | A | – | – | – | – | T | C | C | G | A | T | C | G | G | C | T | G | G | T | G | T | A | T | T | T | T | T | G | T | – | G | G | G |
L. chloropolia 2 | C | C | C | T | T | T | C | T | A | T | A | – | – | – | – | T | C | C | G | A | T | C | G | G | C | T | G | G | T | G | T | A | T | T | T | T | T | G | T | – | G | G | G |
L. chloropolia 3 | C | C | C | T | T | T | C | T | A | T | A | – | – | – | – | T | C | C | G | A | T | C | G | G | C | T | G | G | T | G | T | A | C | T | T | T | T | G | T | – | G | G | G |
L. chloropolia 5 | C | C | C | T | T | T | C | T | A | T | A | – | – | – | – | T | C | C | G | A | T | C | G | G | C | T | G | G | T | G | T | A | Y | T | T | T | T | G | T | – | G | G | G |
L. chloropolia 6 | C | C | C | T | T | T | C | T | A | T | A | – | – | – | – | T | C | C | G | A | T | C | G | G | C | T | G | G | T | G | T | A | C | T | T | T | T | G | T | – | G | G | G |
L. chloropolia 8 | C | C | C | T | T | T | C | T | A | T | A | – | – | – | – | T | C | C | G | A | T | C | G | G | C | T | G | G | T | G | T | A | C | T | T | T | T | G | T | – | G | G | G |
L. chloropolia 9 | C | C | C | T | T | T | C | T | A | T | A | – | – | – | – | T | C | C | G | A | T | C | G | G | C | T | G | G | T | G | T | A | C | T | T | T | T | G | T | – | G | G | G |
L. chloropolia 10 | C | C | C | T | T | T | C | T | A | T | A | – | – | – | – | T | C | C | G | A | T | C | G | G | C | T | G | G | T | G | T | A | T | T | T | T | T | G | T | – | G | G | G |
L. chloropolia 7 | C | C | C | T | T | T | C | T | A | T | A | – | – | – | – | T | C | C | G | A | T | C | G | G | C | T | G | G | T | G | T | A | C | T | T | T | T | G | T | – | G | G | G |
L. chloropolia 4 | C | C | C | T | T | T | C | T | A | T | A | – | – | – | – | T | C | C | G | A | T | C | G | G | C | T | G | G | T | G | T | A | T | T | T | T | T | G | T | – | G | A | G |
L. chloropolia 12 | C | C | C | T | T | T | C | T | A | T | – | – | – | – | – | T | C | C | G | A | T | C | G | G | C | T | G | G | T | G | T | A | T | T | T | T | T | G | T | – | G | G | G |
L. chloropolia 11 | C | C | C | T | T | T | C | T | A | T | – | – | – | – | – | T | C | C | G | A | T | C | G | G | C | T | G | G | T | G | T | A | T | T | T | T | T | G | T | – | G | G | G |
L. chloropolia 13 | C | C | C | T | T | T | C | T | A | T | – | – | – | – | – | T | C | C | G | A | T | C | G | G | C | T | G | G | T | G | T | A | T | T | T | T | T | G | T | – | G | G | G |
L. ochrophaea 1 | – | C | C | G | A | A | T | C | G | C | A | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | T | G | T | C | T | C | T | G | T | – | G | G | G |
L. ochrophaea 5 | – | C | C | G | A | A | T | C | G | C | A | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | T | C | T | G | T | – | – | G | G |
L. ochrophaea 3 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | T | C | T | G | T | – | G | G | G |
L. ochrophaea 6 | – | C | Y | G | A | A | T | C | G | C | A | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | T | C | T | G | T | – | G | G | G |
L. ochrophaea 7 | – | Y | C | G | A | A | T | C | G | C | A | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | T | C | T | G | T | – | G | G | G |
L. ochrophaea 8 | – | C | C | G | A | A | T | C | G | C | A | T | C | T | T | C | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | T | C | T | G | T | – | G | G | G |
L. ochrophaea 4 | – | C | C | G | A | A | T | C | G | C | A | T | C | T | T | T | T | T | G | G | C | T | A | A | T | C | A | G | C | C | C | G | T | C | T | C | C | G | T | C | G | G | G |
L. elatina 2 | – | C | C | G | A | A | T | C | G | C | A | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 3 | – | C | C | G | A | A | T | C | G | C | A | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 1 | – | C | C | G | A | A | T | C | G | C | A | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 4 | – | C | C | G | A | A | T | C | G | C | A | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 5 | – | C | C | G | A | A | T | C | G | C | A | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 6 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 8 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 10 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 7 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 12 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 22 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 23 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 11 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 9 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 21 | – | C | C | G | A | A | T | C | G | C | A | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | T | C | T | G | T | – | G | G | G |
L. elatina 20 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | T | C | T | G | T | – | G | G | G |
L. elatina 14 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 17 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 15 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 18 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | – |
L. elatina 13 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 16 | – | C | C | G | A | A | T | C | G | C | – | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
L. elatina 26 | – | C | C | G | A | A | T | C | G | C | A | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | T | C | T | G | T | – | G | G | G |
L. elatina 27 | – | C | C | G | A | A | T | C | G | C | A | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | T | C | T | G | T | – | G | G | G |
L. elatina 25 | – | C | Y | G | A | A | T | C | G | C | A | T | C | T | T | T | T | T | S | A | C | T | A | A | T | C | A | K | C | C | C | G | T | C | T | C | T | S | Y | – | G | C | G |
L. elatina 32 | – | C | C | G | A | A | T | C | G | C | A | T | C | T | T | T | T | T | G | A | C | T | A | A | T | C | A | G | C | C | C | G | T | C | A | C | T | G | T | – | G | G | G |
Variable positions in the alignment of RPB1 marker of Loxospora chloropolia, L. elatina and L. ochrophaea. Variable characters are marked in bold, while diagnostic nucleotide position characters to distinguish L. chloropolia from both L. elatina and L. ochrophaea are marked with a gray background.
Sequence | Position in alignment | ||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
73 | 82 | 106 | 201 | 282 | 291 | 315 | 342 | 344 | 355 | 357 | 414 | 439 | 441 | 472 | 475 | 507 | 513 | 519 | 527 | 540 | 603 | 687 | 700 | 706 | 711 | 723 | |
L. ochrophaea 1 | G | G | T | T | G | T | T | G | A | G | C | A | G | G | A | A | G | G | A | A | A | T | T | A | C | A | C |
L. ochrophaea 2 | G | G | T | T | G | T | T | G | A | G | C | A | G | G | A | A | G | G | A | A | A | T | T | A | G | A | C |
L. elatina 1 | ? | ? | ? | T | G | T | C | G | R | G | C | A | G | G | A | A | G | G | A | G | A | T | T | N | C | A | C |
L. elatina 26 | G | G | T | T | K | T | T | R | A | S | C | A | D | G | R | M | G | G | A | A | A | T | T | A | C | A | C |
L. chloropolia 11 | A | A | C | C | G | C | T | G | A | G | T | C | G | A | A | A | A | T | G | A | G | C | C | A | C | G | T |
L. chloropolia 12 | A | A | C | C | G | C | T | G | A | G | T | C | G | A | A | A | A | T | G | A | G | C | C | A | C | G | T |
L. chloropolia 5 | A | A | C | C | G | C | T | G | A | G | T | C | G | A | A | A | A | T | G | A | G | C | C | A | C | G | T |
L. chloropolia 6 | A | A | C | C | G | C | T | G | A | G | T | C | G | A | A | A | A | T | G | A | G | C | C | A | C | G | T |
L. chloropolia 7 | A | A | C | C | G | C | T | G | A | G | T | C | G | A | A | A | A | T | G | A | G | C | C | A | C | G | T |
L. chloropolia 8 | A | A | C | C | G | C | T | G | A | G | T | C | G | A | A | A | A | T | G | A | G | C | C | A | C | G | T |
L. chloropolia 10 | A | A | C | C | G | C | T | G | A | G | T | C | R | A | A | A | A | T | G | A | G | C | ? | ? | ? | ? | ? |
The smaller clade of Loxospora s.l. is represented by L. assateaguensis Lendemer, L. confusa Lendemer, L. cristinae Guzow-Krzem., Łubek, Kubiak & Kukwa and L. lecanoriformis (Fig.
Haplotype network showing relationships between mtSSU rDNA sequences from Chicitaea assateaguensis, Ch. confusa and Ch. lecanoriformis. The names of species are followed with sample numbers (see Table
Haplotype network showing relationships between nuITS rDNA sequences from Chicitaea assateaguensis and Ch. confusa. The names of species are followed with sample numbers (see Table
Loxospora elatina s.str. and L. ochrophaea are morphologically similar in terms of thallus and apothecia and both produce thamnolic acid often with elatinic acid and trace amounts of squamatic acid (
Although both species are frequently found on the acidic bark of trees and both are distributed in the Northern Hemisphere, their distributions are divergent and not entirely sympatric. Loxospora elatina is widely distributed in boreal and northern temperate areas of the Northern Hemisphere with oceanic climates (e.g.
In our analyses, sequences of Loxospora elatina s.str. were intermingled with L. ochrophaea within the same clade (Fig.
Differs from Loxospora s.str. in the presence of 2’-O-methylperlatolic acid (vs. thamnolic acid), asci without an amyloid apical dome (vs. asci with a uniformly amyloid apical dome) and simple, broadly ellipsoid, straight or slightly bent ascospores (known only in the type species; vs. transversely septate ascospores).
Chicitaea lecanoriformis (Lumbsch, A.W. Archer & Elix) Guzow-Krzem., Kukwa & Lendemer.
The generic epithet honours Chicita F. Culberson (1931–2023), Senior Research Scientist at Duke University, U.S.A., for her foundational, pioneering and lifelong contributions to the fields of lichen chemistry and lichen taxonomy. In addition to establishing standardised protocols to study lichen secondary chemistry that have been routinely used by workers worldwide for more than half a century, she was an influence for generations of lichenologists with whom she generously shared her knowledge and experience.
Thallus corticolous, pale grey-green to olive-grey, thin or thick, surface smooth to verrucose, sorediate, isidate or without vegetative propagules. Apothecia known in one species, lecanorine, up to 1.5 mm diam., sessile, concave. Thalline margin present, scabrid when young, later entire, dentate, persistent, often flexuose. Disc dark reddish-brown to black, epruinose. Hymenium colourless, inspersed with infrequent oil droplets. Paraphyses simple, unbranched. Hypothecium colourless or pale yellow-brown. Asci claviform to obovate, I–, KI+ slightly blue-green, damaged asci amyloid. Ascospores 6–8 per ascus, broadly ellipsoid, straight or slightly bent, with a single thin wall. Pycnidia found in one species, immersed, visible as minute black dots. Conidia bacilliform.
2’-O-methylperlatolic acid (major) and perlatolic acid (minor or trace; reported only from Chicitaea lecanoriformis). Spot tests: cortex K–, C–, KC–, P–, UV–; medulla and soralia K–, C–, KC–, P–, UV+ white.
For morphology of Chicitaea species, see
Morphology of two species of Chicitaea A Thallus of Ch. confusa on tree trunk (taken by J. Hollinger in the field) B thallus of Ch. cristinae on tree trunk (taken by D. Kubiak in the field) C, D Thalli of Ch. cristinae showing soralia (paratypes of L. cristinae C UGDA L-22396 D UGDA L-20385). Scale bars: 1 mm (C, D).
Loxospora assateaguensis Lendemer, J. North Carolina Acad. Sci. 129(3): 74 (2013). Basionym.
Loxospora confusa Lendemer, J. North Carolina Acad. Sci. 129(3): 77 (2013). Basionym.
Loxospora cristinae Guzow-Krzem., Łubek, Kubiak & Kukwa, in Guzow-Krzemińska, Łubek, Kubiak, Ossowska & Kukwa, Phytotaxa 348(3): 216 (2018). Basionym.
Loxospora lecanoriformis Lumbsch, A.W. Archer & Elix, Lichenologist 39(6): 514 (2007). Basionym.
Ric. Auton. Lich. Crost.: 137 (1852).
Three species, L. cyamidia (Stirt.) Kantvilas, L. septata (Sipman & Aptroot) Kantvilas and L. solenospora (Müll. Arg.) Kantvilas (syn. Sarrameana tasmanica Vězda & Kantvilas), from the Southern Hemisphere have not been sequenced so far. However, they have ascospores similar in shape to other Loxospora spp. (although, in L. cyamidia and L. solenospora, they are rarely septate), asci with an amyloid apical dome and contain thamnolic acid (although L. solenospora may sometimes contain additionally gyrophoric acid or only the latter substance) (
The name Loxospora pustulata (Brodo & W.L. Culb.) Egan was applied to a common and widespread pustulose-sorediate crustose species with thamnolic acid that occurs throughout eastern North America (
Pertusaria chloropolia Erichsen, in Zahlbr., Rabenh. Krypt.-Fl. Ed. 2, 9(5[1]): 645 (1935[1936]). Basionym. Type. [Switzerland. Jura Mts:] Mont de Baulmes, 1100 m elev., [on Abies] 1934, Meylan (lectotype: HBG!, selected here; MycoBank No: MBT 10017691).
Pertusaria chloropolia f. cana Erichsen, in Zahlbr., Rabenh. Krypt.-Fl. Ed. 2, 9(5[1]): 646 (1935[1936]). Syn. nov. Type. [Ukraine. Carpathians:] Lopušanka, 500 m elev., [corticolous] 1931, Nádvorník (lectotype: HBG!, selected here; MycoBank No: MBT 10017692).
The type specimen of Pertusaria chloropolia consists of thin, continuous thallus with discrete soralia forming from flat parts of thalli or from slightly convex areoles and contains thamnolic acid (detected by I. M. Brodo). In the type specimen of P. chloropolia f. cana, soralia are partly damaged, but, similarly to the type of P. chloropolia, the type consists of thin, continuous thallus with discrete soralia and contains thamnolic acid (detected by I. M. Brodo). In the protologue of P. chloropolia f. cana, the type locality was cited as ‘Tschechoslowakei: Karpathoruβland, Lopusanka’ (
Morphology of Loxospora chloropolia (for details of specimens, see Table
Thallus crustose, grey, matt or more often shiny, thin, continuous, slightly folded, cracked to cracked areolate. Areoles flat or rarely convex, not constricted at the base. Soralia whitish to greenish-grey, flat or more often convex, rounded or irregular, mostly discrete and separated, bursting from flat parts of thallus or from areoles, sometimes crowded and the neighbouring soralia more or less fused, but still the boundaries often visible between them or, very rarely, soralia fused into irregular patches in older parts of thallus. Soredia up to 50 µm in diam., often in consoredia up to 100 µm wide. Apothecia very rare, single, up to 1.2 mm in diam. Thalline margin present, esorediate or partly to completely sorediate. Excipulum proporium not evident. Disc reddish-brown, thinly white pruinose. Hymenium up to 100 µm high. Epihymenium straw-brown (K+ pale reddish-brown), with dense granules dissolving in K. Paraphyses not capitate, sometimes anastomosing. Asci 8-spored, with uniformly KI+ blue apical dome. Ascospores 0–3(–5)-septate, spiralled in asci, hyaline, fusiform, curved, 35–48 × 5–7 µm. Pycnidia not known. Photobiont chlorococcoid, cells up to 12 µm in diam.
Thamnolic acid (major), elatinic acid (minor, trace or absent) and squamatic acid (trace or absent). Spot tests: cortex, apothecial section, soralia and medulla K+ lemon-yellow, Pd+ yellow to orange, UV–.
Loxospora chloropolia differs from L. elatina in having a thin, continuous to cracked-areolate thallus with mostly regular soralia, which are discrete at least in young parts of thalli (Fig.
Morphology of Loxospora elatina (for details of specimens, see Table
Loxospora chloropolia can be confused with sorediate species of Chicitaea, but they contain 2’-O-methylperlatolic acid and the thallus is K negative (
The species is corticolous and grows in deciduous or mixed forests on bark of Abies alba, Acer pseudoplatanus, Alnus glutinosa, Betula spp., Corylus avellana, Fagus sylvatica, Juniperus communis, Larix decidua, Picea abies, Pinus sylvestris, Populus tremula, Quercus spp., Sorbus aucuparia and Tilia cordata. So far, it is known from Czechia, Great Britain, Latvia, Norway, Poland, Sweden, Switzerland (type locality) and Ukraine.
See Suppl. material
Ric. Auton. Lich. Crost.: 138 (1852). – Lecanora elatina Ach., Lich. Univ.: 387 (1810).
Lusatia, [corticolous], Mosig? (lectotype: H-ACH 1199A!, selected here; MycoBank No: MBT 10017693).
In the protologue of Lecanora elatina,
Thallus crustose, grey, matt, thin (at the margin) or more usually thick, continuous or cracked, slightly folded at least the margins, later areolate-verrucose to tuberculate (sometimes only part of the thallus tuberculate). Areoles usually strongly convex, tuberculate and constricted at the base or resembling coarse isidia, sometimes pustulate, dispersed or aggregated. Soralia whitish to greenish-grey, flat or more often convex, rounded or more often irregular, bursting from the top of areoles, often fused and tending to coalesce locally on the thallus or covering most parts of the thallus, sometimes developing from irregular cracks of the thallus. Soredia up to 60 µm in diam., often in consoredia up to 120 µm wide. Apothecia rare, up to 1.2 mm in diam., single or grouped up to five apothecia. Thalline margin present in young apothecia, smooth to flexuose, verrucose or dentate, sometimes with small soralia, later excluded. Excipulum proprium thin, flesh-coloured to white grey in surface view, orange-brown in section, smooth or more often flexuous, up to 100 µm wide in section. Disc reddish-brown, thinly white pruinose. Hymenium up to 125 µm high. Epihymenium straw-brown (K+ pale reddish-brown), with dense granules dissolving in K. Paraphyses not capitate, sometimes anastomosing. Asci 8-spored, with uniformly KI+ blue apical dome. Ascospores 0–5-septate, spiralled in asci, hyaline, fusiform, curved, 35–53(–64) × 4.5–6.5(–7) µm. Pycnidia not known. Photobiont chlorococcoid, cells up to 12 µm in diam.
Thamnolic acid (major), elatinic acid (minor, trace or absent) and squamatic acid (trace or absent). Spot tests: cortex, apothecial section, soralia and medulla K+ lemon-yellow, Pd+ yellow to orange, UV–.
Loxospora elatina is similar to L. chloropolia; for differences, see under that species. The name (often as Haematomma elatinum (Ach.) A. Massal.) was often used in the past for the non-sorediate specimens currently referred to as L. ochrophaea. Both species, as mentioned above, are indeed morphologically (except for the production of soralia) and chemically almost identical and may represent the same species.
Loxospora ochrophaeoides, when described, was compared with L. ochrophaea and characterised as differing only in the presence of semi-globose soralia (
Some specimens of L. elatina were found to be determined as Ochrolechia androgyna (Hoffm.) Arnold, but that species and the recently segregated O. bahusiensis H. Magn. and O. mahluensis Räsänen differ in the production of gyrophoric acid and simple, larger ascospores (
The species is corticolous or lignicolous and grows on bark of various coniferous and deciduous tree in forests. The species was reported from many countries in the Northern Hemisphere; however, as some records may belong to L. chloropolia, its distribution needs revision. In the course of this study, we examined specimens from Austria, Czechia, Estonia, Finland, Latvia, Lithuania, Poland, Slovakia, United Kingdom, Ukraine and USA.
See Suppl. material
The authors express gratitude to Curators of BG, BILAS, E, H, O Herbaria and Dr. Jiří Maliček for the loan of Loxospora spp. specimens, Professor Teuvo Ahti for a discussion of the Acharius collection of Lecanora elatina and Professor H. Thorsten Lumbsch for the information on the sequences of Loxospora lecanoriformis. Our friends, Dr. Adam Flakus and Dr. Emilia A. Ossowska are thanked for their help with taking pictures of species of Loxospora s.l. and Dr. Rafał Szymczyk, for sending us several fresh collections of Loxospora. Jason Hollinger and Dr. Dariusz Kubiak are thanked for allowing us to use pictures of two Chicitaea species. Author Lendemer’s contribution is part of US NSF DEB Award #2115190.
The authors have declared that no competing interests exist.
No ethical statement was reported.
No funding was reported.
Łucja Ptach-Styn: conceptualization, molecular and phylogenetic analyses, identification of secondary metabolites, manuscript writing and editing; Beata Guzow-Krzemińska: conceptualization, molecular and phylogenetic analyses, manuscript writing and editing; James Lendemer: conceptualization, identification of specimens, manuscript writing and editing; Tor Tønsberg: identification of secondary metabolites, manuscript writing and editing: Martin Kukwa: conceptualization, identification of secondary metabolites and revision of specimens, manuscript writing and editing.
Łucja Ptach-Styn https://orcid.org/0000-0003-2027-1636
Beata Guzow-Krzemińska https://orcid.org/0000-0003-0805-7987
James C. Lendemer https://orcid.org/0000-0003-1186-0711
Martin Kukwa https://orcid.org/0000-0003-1560-909X
All of the data that support the findings of this study are available in the main text or Supplementary Information.
Conditions for each set of primers used in PCR
Data type: docx
Sequences obtained from GenBank and used in phylogenetic analyses
Data type: xlsx
Explanation note: Samples marked with an asterisk in herbarium column were revised by authors.
Specimens of Loxospora chloropolia, L. elatina and L. ochrophaea revised for this study
Data type: xlsx