Data Paper |
Corresponding author: Luana Francesconi ( luana.francesconi3@unibo.it ) Academic editor: Pradeep Divakar
© 2024 Luana Francesconi, Matteo Conti, Gabriele Gheza, Stefano Martellos, Pier Luigi Nimis, Chiara Vallese, Juri Nascimbene.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Francesconi L, Conti M, Gheza G, Martellos S, Nimis PL, Vallese C, Nascimbene J (2024) The Dolichens database: the lichen biota of the Dolomites. MycoKeys 103: 25-35. https://doi.org/10.3897/mycokeys.103.115462
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The Dolichens project provides the first dynamic inventory of the lichens of the Dolomites (Eastern Alps, Italy). Occurrence records were retrieved from published and grey literature, reviewed herbaria, unpublished records collected by the authors, and new sampling campaigns, covering a period from 1820 to 2022. Currently, the dataset contains 56,251 records, referring to 1,719 infrageneric taxa, reported from 1820 to 2022, from hilly to nival belts, and corresponding to about half of the species known for the whole Alpine chain. Amongst them, 98% are georeferenced, although most of them were georeferenced a posteriori. The dataset is available through the Global Biodiversity Information Facility (GBIF; https://www.gbif.org/es/dataset/cea3ee2c-1ff1-4f8e-bb37-a99600cb4134) and through the Dolichens website (https://italic.units.it/dolichens/). We expect that this open floristic inventory will contribute to tracking the lichen diversity of the Dolomites over the past 200 years, and providing the basis for future taxonomic, biogeographical, and ecological studies.
Georeferencing, herbarium specimens, historical records, lichen diversity, occurrence, open inventory
The Dolomites, in the Southeastern Italian Alps, were declared a UNESCO World Heritage Site in June 2009, because of the uniqueness of their geology and landscapes. Such a variety of spectacular forms are related to their complex geological origin, as well as to the processes that have modeled the landscape (
The Dolomites are one of the lichenologically best-known areas in Italy. Here, lichen diversity is strictly related to the variety of climatic conditions and substrates (
These comparatively high figures are due to the long tradition of lichenological research in the area, which has been explored since the 19th century. The majority of historical contributions are attributed to Ferdinand Arnold (1828–1901), who surveyed South Tyrol in the last years of the 1800s and published the results in his Lichenologische Ausfluge in Tirol (1868–1897). Another relevant contribution was provided by Ernst Kernstock (1852–1900) in his Lichenologische Beitrage (1890–1896). The lichen records collected in the area until 1901 were summarized by
Despite the lichenological relevance of the Dolomites, no modern synthesis of their lichen diversity was ever attempted. There are important resources on the lichens of the Alps (
Inventories based on new field explorations (
The Dolichens project was launched in 2022. It aims at building a dynamic geo-referenced inventory of the lichen biota of the Dolomites by aggregating occurrence records from published and gray literature (such as university research theses), unpublished data, and herbaria from the 19th century onwards. The project aims at aggregating occurrence records from recent surveys as well. The result is a database accessible online (https://italic.units.it/dolichens/), which is continuously updated.
Description: The Dolichens system hosts georeferenced occurrence records of lichens in the Dolomites, from the 19th century onwards. The geographical delimitation of the Dolomites region was, however, not simple, since several contrasting definitions exist (
Study area of the project. The core area (dark orange) is wider than the SOIUSA definition (black line,
Sampling description: For this study occurrence records were collected from different sources. First of all, to compile a baseline inventory of the lichens of the Dolomites, we gathered records from literature starting from the 19th century (such as checklists, vegetation surveys, and taxonomic revisions). Among them, the most exhaustive historical source is the catalogue of
Quality control: Specimens were collected and identified/revised by the experienced lichenologists of our group (e.g. Nascimbene, Nimis) and colleagues from other universities. However, the current database is not a critical checklist. The latter will be developed in the future by critically evaluating all the collected records.
Scientific names were automatically aligned to the latest version of the annotated checklist of Italian lichens (
When geographical coordinates of the collection locality were missing, the records were georeferenced a posteriori using Google Maps, Google Earth, and regional GIS maps, following the best practices proposed by
Description: The dataset contains occurrence data of lichens reported for 4 administrative regions and 11 provinces of Italy: Friuli Venezia Giulia (Udine 366 and Pordenone 410), Lombardy (Brescia 11 and Sondrio 2), Trentino Alto Adige (Trento 18,052 and Bolzano 20,543), Veneto (Belluno 14,270, Padova 1, Treviso 779, Verona 106 and Vicenza 325). The distribution of records in the study area is shown in Fig.
Coordinates: 10.2782 and 13.7173 Latitude; 45.3834 and 47.0918 Longitude.
Description: According to the GBIF Taxonomic Backbone, the dataset comprises taxa from 39 orders, 102 families, and 416 genera.
The following families are represented: Acarosporaceae, Adelococcaceae, Arctomiaceae, Arthoniaceae, Arthopyreniaceae, Arthrorhaphidaceae, Ascodichaenaceae, Baeomycetaceae, Biatorellaceae, Byssolomataceae, Caliciaceae, Candelariaceae, Catillariaceae, Chrysotrichaceae, Cladoniaceae, Coccocarpiaceae, Coenogoniaceae Collemataceae, Coniocybaceae, Cystocoleaceae, Dacampiaceae, Didymellaceae, Elixiaceae, Epigloeaceae, Fuscideaceae, Gomphillaceae, Graphidaceae, Gyalectaceae, Haematommataceae, Helocarpaceae, Hygrophoraceae, Hymeneliaceae, Hysteriaceae, Icmadophilaceae, Lecanographaceae, Lecanoraceae, Lecideaceae, Leprocaulaceae, Lichenotheliaceae, Lichinaceae, Lobariaceae, Lopadiaceae, Malmideaceae, Massalongiaceae, Megasporaceae, Melaspileaceae, Microcaliciaceae, Monoblastiaceae, Mycocaliciaceae, Mycoporaceae, Mycosphaerellaceae, Myriangiaceae, Naetrocymbaceae, Nephromataceae, Ochrolechiaceae, Opegraphaceae, Ophioparmaceae, Pannariaceae, Parmeliaceae, Patellariaceae, Peltigeraceae, Peltulaceae, Pertusariaceae, Phlyctidaceae, Physciaceae, Placynthiaceae, Polycoccaceae, Porinaceae, Porpidiaceae, Psilolechiaceae, Psoraceae, Pycnoraceae, Pyrenulaceae, Ramalinaceae, Ramboldiaceae, Rhizocarpaceae, Roccellaceae, Sagiolechiaceae, Sareaceae, Sarrameanaceae, Schaereriaceae, Sclerococcaceae, Scoliciosporaceae, Sphaerophoraceae, Sphinctrinaceae, Sporastatiaceae, Stereocaulaceae, Stictidaceae, Strangosporaceae, Strigulaceae, Teloschistaceae, Tephromelataceae, Thelenellaceae, Thelocarpaceae, Trapeliaceae, Trypetheliaceae, Umbilicariaceae, Vahliellaceae, Varicellariaceae, Verrucariaceae, Xanthopyreniaceae, and Xylographaceae.
Taxonomic distribution (Fig.
Data were reported from 1820 to 2022. Occurrences per year are shown in Fig.
This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.
Data package title: Dolichens project: the lichen biota of the Dolomites.
Resource link: https://doi.org/10.15468/64sy7b.
Alternative identifiers: https://cloud.gbif.org/eca/resource?r=dolichens_project.
Number of data sets: 1.
Data set name: Dolichens project: the lichen biota of the Dolomites.
Download URL: https://www.gbif.org/occurrence/download?dataset_key=cea3ee2c-1ff1-4f8e-bb37-a99600cb4134.
Data format: Darwin Core.
Description: Launched in 2022 the Dolichens project aims to assemble an inventory of the lichens reported from the Dolomite area since the 19th century. Data of lichen occurrences have been retrieved and aggregated from herbaria, literature, unpublished data, and new sampling campaigns.
Column label | Column description |
---|---|
occurrenceID | A unique identifier for the occurrence. |
basisOfRecord | The source or nature of the record. |
verbatimIdentification | The original, unaltered identification of the organism. |
scientificName | The scientifically accepted name of the organism. |
Kingdom | The taxonomic kingdom to which the organism belongs. |
eventDate | The date when the occurrence was observed or recorded. |
stateProvince | The administrative region in which the organism was recorded. |
County | The name of the next smaller administrative region than state Province in which the organism was recorded. |
Locality | The location where the organism was observed. |
decimalLatitude | The latitude coordinates of the occurrence in decimal format. |
decimalLongitude | The longitude coordinates of the occurrence in decimal format. |
geodeticDatum | The reference geodetic datum for the coordinate data. |
coordinateUncertaintyInMeters | The level of uncertainty associated with the geographic coordinates, in meter |
minimumElevationInMeters | The lowest elevation at which the organism was found. |
maximumElevationInMeters | The highest elevation at which the organism was found. |
Continent | The continent where the occurrence was recorded. |
Country | The country where the occurrence was recorded. |
countryCode | The code of the country where the occurrence was recorded. |
recordedBy | The person responsible for recording the occurrence. |
identifiedBy | The person responsible for identifying the organism. |
associatedReferences | References or sources of information associated with the occurrence. |
License | The terms and conditions under which data can be used and shared |
Language | The language in which the data or metadata for the occurrence is written |
LF gratefully acknowledges MUR and EU-FSE for financial support of the Ph.D. fellowship PON Research and Innovation 2014–2020 (D.M. 1061/2021) XXXVII Cycle in Future Earth, Climate Change and Societal Challenges.
The authors have declared that no competing interests exist.
No ethical statement was reported.
No funding was reported.
Conceptualization: JN. Data curation: MC, PLN, LF, GG, JN, CV. Formal analysis: LF, MC. Funding acquisition: JN. Methodology: SM, JN. Project administration: JN. Supervision: SM, JN. Validation: PLN. Visualization: LF. Writing - original draft: MC, LF. Writing - review and editing: CV, JN, SM, LF, GG, PLN, MC.
Luana Francesconi https://orcid.org/0000-0003-1745-7069
Matteo Conti https://orcid.org/0009-0003-4917-2639
Stefano Martellos https://orcid.org/0000-0001-5201-8948
Pier Luigi Nimis https://orcid.org/0000-0003-3523-0183
Chiara Vallese https://orcid.org/0000-0002-8531-5954
Juri Nascimbene https://orcid.org/0000-0002-9174-654X
All of the data that support the findings of this study are available in the main text or Supplementary Information.
Krona graph taxa and occurrences
Data type: html
Explanation note: Interactive file of the krona graph, showing relative abundance of the total taxa and the total occurrences in in each class, order, family and genus.