Research Article |
Corresponding author: Yan-Feng Han ( swallow1128@126.com ) Academic editor: Huzefa Raja
© 2024 Hai-Yan Wang, Xin Li, Chun-Bo Dong, Yan-Wei Zhang, Wan-Hao Chen, Jian-Dong Liang, Yan-Feng Han.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Wang H-Y, Li X, Dong C-B, Zhang Y-W, Chen W-H, Liang J-D, Han Y-F (2024) Two new species of Sordariomycetes (Chaetomiaceae and Nectriaceae) from China. MycoKeys 102: 301-315. https://doi.org/10.3897/mycokeys.102.114480
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Rich and diverse fungal species occur in different habitats on the earth. Many new taxa are being reported and described in increasing numbers with the advent of molecular phylogenetics. However, there are still a number of unknown fungi that have not yet been discovered and described. During a survey of fungal diversity in different habitats in China, we identified and proposed two new species, based on the morphology and multi-gene phylogenetic analyses. Herein, we report the descriptions, illustrations and molecular phylogeny of the two new species, Bisifusarium keratinophilum sp. nov. and Ovatospora sinensis sp. nov.
Fungal taxonomy, mesophilic fungus, phylogeny, thermophilic fungus, two new taxa
The species diversity of fungi on earth is extremely rich, with some studies suggesting that there are as many as 5.1 million species of fungi (
Due to factors such as global climate change, urban growth and environmental pollution, there is an increasingly accelerated loss of natural habitats worldwide, which, in turn, leads to a decrease in species diversity and the abundance of non-human organisms (
Fortunately, our team has discovered many new fungal species during the investigation of fungal diversity in different habitats in China (
Soil samples were collected from two zoos, Shandong Province, China. Samples from 3–10 cm below the soil surface were collected, and placed in Ziploc plastic bags and brought back to the laboratory. Then, the 2 g collected samples were placed into a sterile conical flask containing 20 ml sterile water and thoroughly shaken using a Vortex vibration meter. Next, the suspension was diluted to a concentration of 10-3. Subsequently, 1 ml of the diluted sample was added to a sterile Petri dish and mixed with Sabouraud’s dextrose agar (SDA; peptone 10 g/l, dextrose 40 g/l, agar 20 g/l, 3.3 ml of 1% Bengal red aqueous solution) medium containing 50 mg/l penicillin and 50 mg/l streptomycin. After the plates were incubated at 25 °C and 45 °C for 1–2 weeks, single colonies were transferred from the plates to new potato dextrose agar (PDA, potato 200 g/l, dextrose 20 g/l, agar 20 g/l) plates.
The target strains were transferred to plates of malt extract agar (MEA), oatmeal agar (OA) and potato dextrose agar (PDA) and were incubated at 25 °C and 45 °C. After seven days, their colony characteristics (the colony colours and diameters) on the surface and reverse of inoculated Petri dishes were observed and recorded and microscopic characteristics (fungal hyphae and conidiogenous structures) were examined and captured by making direct wet mounts with 25% lactic acid on PDA, with an optical microscope (DM4 B, Leica). The ex-types of two new species were deposited in the
China General Microbiological Culture Collection Center (
Total genomic DNA was extracted using the BioTeke Fungus Genomic DNA Extraction kit (DP2032, BioTeke) following the manufacturer’s instruction. Primer combinations such as ITS1/ITS4 (
Species | Strains | ITS | LSU | tef1 | cmdA | rpb2 | tub2 | Reference |
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Bisifusarium aseptatum | LC13607 | MW016390 | MW016390 | MW580430 | MW566257 | MW474376 | MW533717 |
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LC13608 | MW016391 | MW016391 | MW580431 | MW566258 | MW474377 | MW533718 |
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Bisifusarium allantoides | UBOCC-A-120035 | MW654536 | MW654511 | MW811075 | MW811017 | MW811060 | MW811090 |
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UBOCC-A-120036T | MW654548 | MW654523 | MW811087 | MW811029 | MW811072 | MW811102 |
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UBOCC-A-120037 | MW654549 | MW654524 | MW811088 | MW811030 | MW811073 | MW811103 |
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Bisifusarium biseptatum | CBS 110311T | MW654547 | MW654522 | MW811086 | MW811028 | MW811071 | MW811101 |
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Bisifusarium dimerum | MNHN-RF-05625T | MW654546 | MW654521 | MW811085 | MW811027 | – | MW811100 |
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CBS 108944T | JQ434586 | JQ434514 | KR673912 | KM231365 | KM232363 | EU926400 |
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Bisifusarium penicilloides | UBOCC-A-120021T | MW654542 | MW654517 | MW811081 | MW811023 | MW811066 | MW811096 |
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UBOCC-A-120034 | MW654541 | MW654516 | MW811080 | MW811022 | MW811065 | MW811095 |
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VTT-D-041022 | MW654535 | MW654510 | MW811074 | MW811016 | MW811059 | MW811089 |
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Bisifusarium delphinoides | CBS 120718T | EU926229 | EU926229 | EU926296 | KM231363 | – | EU926362 |
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CBS 110140 | MW827603 | – | EU926302 | – | – | EU926368 |
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CBS 110310 | EU926240 | EU926240 | EU926307 | – | – | EU926373 |
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Bisifusarium nectrioides | CBS 176.31T | EU926245 | EU926245 | EU926312 | KM231362 | – | EU926378 |
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Bisifusarium penzigii | CBS 116508 | EU926256 | EU926256 | EU926323 | – | – | EU926389 |
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Bisifusarium domesticum | CBS 102407 | EU926221 | EU926221 | EU926288 | – | – | EU926355 |
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CBS 244.82 | EU926220 | EU926220 | EU926287 | – | – | EU926354 |
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Bisifusarium lunatum | CBS 632.76T | EU926224 | EU926224 | EU926291 | KM231367 | – | EU926357 |
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Bisifusarium tonghuanum | CGMCC3.17369 | KX790413 | KX790414 | KX790418 | – | – | KX790417 |
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CGMCC3.17370 | KX790415 | KX790416 | KX790420 | – | – | KX790419 |
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Bisifusarium lovelliae | BRIP 75047a | OQ629340 | – | – | – | OQ626864 | – | Tan et al. (2023) |
Bisifusarium keratinophilum |
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OP693473 | OP693469 | OR168082 | OR043998 | OR168079 | OR168085 | This study |
GZUIFR 22.371 | OP693474 | OP693470 | OR168083 | OR043999 | OR168080 | OR168086 | This study | |
GZUIFR 22.372 | OP693475 | OP693471 | OR168084 | OR044000 | OR168081 | OR168087 | This study | |
Longinectria lagenoides | UBOCC-A-120039 | MW654539 | MW654514 | MW811078 | MW811020 | MW811063 | MW811093 |
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Longinectria verticilliforme | UBOCC-A-120043 | MW654540 | MW654515 | MW811079 | MW811021 | MW811064 | MW811094 |
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Ovatospora amygdalispora | CBS 672.82T | – | – | – | – | MZ342991 | MZ343030 |
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Ovatospora angularis | LC3973 | KP336768 | KP336817 | – | – | KT149491 | KP336866 |
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Ovatospora unipora | CBS 109.83T | KX976689 | KX976787 | – | – | KX976902 | KX977037 |
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Ovatospora brasiliensis | CBS 140.50 | KX976683 | KX976781 | – | – | KX976896 | KX977031 |
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Ovatospora medusarum | CBS 148.67T | KX976684 | KX976782 | – | – | KX976897 | KX977032 |
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Ovatospora mollicella | CBS 583.83T | KX976685 | KX976783 | – | – | KX976898 | KX977033 |
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Ovatospora pseudomollicella | CBS 251.75T | KX976686 | KX976784 | – | – | KX976899 | KX977034 |
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Ovatospora senegalensis | CBS 728.84T | KX976687 | KX976785 | – | – | KX976900 | KX977035 |
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Trichocladium asperum | CBS 903.85T | LT993632 | LT993632 | – | – | LT993551 | LT993713 |
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Trichocladium acropullum | CBS 114580T | LT993626 | LT993626 | – | – | LT993545 | LT993707 |
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Trichocladium amorphum | CBS 127763T | LT993628 | LT993628 | – | – | LT993547 | LT993709 |
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Trichocladium antarcticum | CBS 123565T | LT993629 | LT993629 | – | – | LT993548 | LT993710 |
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Trichocladium beniowskiae | CBS 757.74T | LT993635 | LT993635 | – | – | LT993554 | LT993716 |
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Trichocladium gilmaniellae | CBS 388.75T | LT993638 | LT993638 | – | – | LT993557 | LT993719 |
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Thermochaetoides dissita | CBS 180.67T | – | MK919319 | – | – | MK919375 | MK919433 |
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Thermochaetoides thermophila | CBS 144.50T | – | MK919314 | – | – | KM655436 | MK919428 |
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Ovatospora sinensis | CGMCC40675T | OR016676 | OR016679 | – | – | OR043992 | OR043995 | This study |
GZUIFR 23.002 | OR016677 | OR016680 | – | – | OR043993 | OR043996 | This study | |
GZUIFR 23.003 | OR016678 | OR016681 | – | – | OR043994 | OR043997 | This study | |
Triangularia verruculosa | CBS 148.77 | MK926874 | MK926874 | – | – | MK876836 | MK926974 |
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Triangularia allahabadensis | CBS 724.68T | MK926865 | MK926865 | – | – | MK876827 | MK926965 |
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In this study, the relevant sequences were obtained from GenBank (Table
The ITS regions of all isolates were sequenced and BLASTn searched in NCBI. Our isolates were identified as two genera, Bisifusarium L. Lombard, Crous & W. Gams and Ovatospora X.Wei Wang, Samson & Crous, respectively. The ITS sequences of the isolated strains were less than 97% similarity to the closest strains in GenBank and were considered as the potential new species.
To further determine the phylogenetic position of these isolated strains, we performed a multi-locus phylogenetic analysis, based on ITS, LSU, tef1, cmdA, rpb2 and tub2 gene. The phylogenetic trees (Figs
Genus | ITS | LSU | tef1 | cmdA | rpb2 | tub2 | |
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Bisifusarium | ML analysis BI analysis | TIM2e+I+G4 SYM+I+G4 | K2P K2P | TNe+R2 K2P+G4 | TIM3e+I+G4 SYM+I+G4 | TIM3e+I+G4 SYM+I+G4 | TIM3e+I+G4 SYM+I+G4 |
Ovatospora | ML analysis BI analysis | GTR+F+G4 GTR+F+G4 | TIM3+F+I GTR+F+I | TIM3+F+G4 GTR+F+I+G4 | HKY+F+I+G4 HKY+F+I+G4 |
Phylogenetic tree of the genus Bisifusarium constructed from the dataset of ITS, LSU, tef1, cmdA, rpb2 and tub2. Notes: Statistical support values (BI/ML) were shown at nodes. ML bootstrap values ≥ 75% and posterior probabilities ≥ 0.90 are shown above the internal branches. ‘–’ indicates the absence of statistical support (< 75% for bootstrap proportions from ML analysis; < 0.90 for posterior probabilities from Bayesian analysis). Three new strains are shown in blue font. BRIP: Queensland Plant Pathology Herbarium, Australia; CBS: CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands;
In this study, three isolates of the genus Bisifusarium clustered in a well-separated clade with a high support value (BI/ML 1/100) (Fig.
Hypocreales Lindau
Nectriaceae Tul. & C. Tul.
Bisifusarium L. Lombard, Crous & W. Gams
Referring to degradation properties of chicken feathers.
China: Shandong Province, Jinan City, Jinan Zoo (36°42'14"N, 116°58'55"E), soil, July 2021, Xin Li & Yan-Feng Han, ex-type
Phylogenetic tree of the genus Ovatospora constructed from ITS, LSU, tub2 and rpb2. Notes: Statistical support values (BI/ML) were shown at nodes. ML bootstrap values ≥ 75% and posterior probabilities ≥ 0.90 are shown above the internal branches. ‘–’ indicates the absence of statistical support (< 75% for bootstrap proportions from ML analysis; < 0.90 for posterior probabilities from Bayesian analysis). Three new strains are shown in blue. CBS: CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands;
Culture characteristics: Colonies growing on MEA, OA and PDA after 7 days of incubation at 25 °C. On MEA, reaching up 20–25 mm diam., thick villiform, cream (RAL9001) at the centre, oyster white (RAL1013) at the edge, mostly regular in the margin, reverse light ivory (RAL 1015); On OA, reaching up 25–35 mm diam.; pure white (RAL9010), thin, villiform, mostly regular in the margin, reverse tele grey 4 (RAL7047); On PDA, reaching up 25–30 mm diam.; cream (RAL9001), thin, short villiform, mostly regular in the margin, reverse cream (RAL9001).
On PDA medium, Hyphae septate, hyaline, smooth, thick-walled, 1.5–3.5 μm wide. Conidiophores arising from hyphae, solitary, smooth, mostly clavate, 5–25 × 1–2.5 μm. Phialidic pegs arising from hyphae. Monophialides laterally on hyphae or phialidic pegs, cylindrical, erect. Polyphialides absent. Macroconidia produced by monophialidic conidiophores, mostly 0-1septate, rarely 2-septate, mostly crescent, rarely clavate, 12–23.0 × 2.0–3.5 μm (av. 16 × 2.5 μm, n = 50). Microconidia produced by later phialidic pegs, monocelled, cymbiform, 6.0–9.5 × 1.5–2.5 μm (av. 7.5 × 2.0 μm, n = 50).
China: Shandong Province, Jinan City, Jinan Zoo (36°42'14"N, 116°58'55"E), soil, July 2021, living cultures GZUIFR 22.371, GZUIFR 22.372.
Phylogenetically, our three strains (
Our team found that B. keratinophilum has the ability to degrade chicken feathers. Specific method: the spore suspension (107spores per millilitre) was inoculated into the fermentation medium containing 1g chicken feathers and cultured in a shaking table at 150 rpm, 30 °C for 96 h, then the chicken feather residue was filtered, dried and weighed. This fungus had a good degradation effect on chicken feathers with the degradation rate of 52.02%.
Sordariales Chadef. ex D. Hawksw. & O.E. Erikss.
Chaetomiaceae G. Winter
Ovatospora X.Wei Wang, Samson & Crous
Refers to China where the species was discovered.
China: Shandong Province, Qingdao City, Qingdao Zoo (35°59'14"N, 120°3'53"E), soil, July 2021, Hai-Yan Wang & Yan-Feng Han, ex-type
Culture characteristics: Colonies growing on MEA, OA and PDA after 7 days of incubation at 45 °C. Colony on MEA reaching about 35–45 mm diam., pure white (RAL9010), densely villiform; irregular in the margin; reverse light ivory (RAL1015), radial lines, irregular in the margin. Colony on OA reaching about 80–90 mm diam., grey white (RAL9002), sparsely aerial mycelium, mostly regular in the margin; reverse grey white (RAL9002). Colony on PDA reaching about 45–50 mm diam., creamy (RAL9001), densely villiform obviously powdery conidia group, sparsely spongy, irregular in the margin; reverse creamy (RAL9001), plicated at the centre, irregular in the margin.
Hyphae septate, hyaline, smooth, thin-walled, 1.5–3.5 μm wide. Conidiophores arising from hyphae, 2–30 × 1.5–3.5 μm, solitary or branched, smooth, mostly clavate, septate. Conidiogenous cell reduced to Conidiophores. Conidia on conidiogenous or acrogenous directly on the hyphae, hyaline or light-brown, mostly globose, rarely obovate, thick-walled, 6.0–10.5 μm diam. (av. 8.0 μm). Sexual morph unknown.
China. Shandong Province, Qingdao City, Qingdao Zoo (35°59'14"N, 120°3'53"E), soil, July 2021, Hai-Yan Wang & Yan-Yeng Han, living cultures GZUIFR 23.002, GZUIFR 23.003.
Phylogenetically, our three strains (
Based on the morphology and phylogenetic analysis of a combined dataset of ITS, LSU, rpb2and tub2 sequence data,
The authors have declared that no competing interests exist.
No ethical statement was reported.
The work was supported by “Hundred” Talent Projects of Guizhou Province (Qian Ke He [2020] 6005), the National Natural Science Foundation of China (no. 32060011, 32160007, 32260003) and Guizhou Provincial Department of Education Characteristic Field Project [QianJiaohe KY character [2021]073].
Sampling and fungal isolation: Hai-Yan Wang, Xin Li and Yan-Feng Han; molecular biology analysis and phylogenetic analysis: Chun-Bo Dong and Wan-Hao Chen; microscopy: Hai-Yan Wang and Yan-Wei Zhang; original draft preparation: Hai-Yan Wang and Yan-Feng Han; review and editing: Hai-Yan Wang, Xin Li, Chun-Bo Dong, Wan-Hao Chen, Jian-Dong Liang; Funding: Yan-Wei Zhang and Yan-Feng Han. All authors reviewed and approved the final manuscript.
Hai-Yan Wang https://orcid.org/0000-0001-9190-0490
Xin Li https://orcid.org/0000-0001-7910-1469
Chun-Bo Dong https://orcid.org/0000-0001-7074-5700
Yan-Wei Zhang https://orcid.org/0000-0003-1251-5821
Wan-Hao Chen https://orcid.org/0000-0001-7240-6841
Jian-Dong Liang https://orcid.org/0000-0002-3939-3900
Yan-Feng Han https://orcid.org/0000-0002-8646-3975
All of the data that support the findings of this study are available in the main text or Supplementary Information.
The alignments used in the phylogenetic analysis
Data type: zip