Research Article |
Corresponding author: XiaoYong Liu ( 622001@sdnu.edu.cn ) Corresponding author: Bo Huang ( bhuang@ahau.edu.cn ) Academic editor: Kerstin Voigt
© 2023 Yong Nie, Yue Cai, Heng Zhao, ZhengYu Zhou, ChangWei Zhao, XiaoYong Liu, Bo Huang.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Nie Y, Cai Y, Zhao H, Zhou Z, Zhao C, Liu X, Huang B (2023) Morphological and phylogenetic analyses reveal two new species in Conidiobolus s.s. (Conidiobolaceae, Entomophthorales) from China. MycoKeys 98: 221-232. https://doi.org/10.3897/mycokeys.98.103603
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The genus Conidiobolus s.s. (Conidiobolaceae, Entomophthorales) has been delimited to accommodate members that produce microspores. Herein, morphological studies, combined with phylogenetic analysis based on the nuclear large subunit of rDNA (nucLSU), the mitochondrial small subunit of rDNA (mtSSU), and the elongation-factor-like gene (EFL) revealed two Conidiobolus s.s. species isolated from plant debris in China. Conidiobolus longiconidiophorus sp. nov. is mainly characterised by its long primary conidiophores, while Conidiobolus polysporus sp. nov. is diagnosed by 2–3 primary conidia arising from branched primary conidiophores. Phylogenetically, the former is grouped into a separate clade, while the latter is closely related to C. incongruus, but is morphologically distinguished by its larger primary conidia and branched conidiophores.
Conidiobolaceae, microspore, morphology, new taxa, phylogeny
The genus Conidiobolus (Ancylistaceae, Entomophthorales) was divided into five genera, i.e. Azygosporus B. Huang & Y. Nie, Capillidium B. Huang & Y. Nie, Conidiobolus s.s. B. Huang & Y. Nie, Microconidiobolus B. Huang & Y. Nie, and Neoconidiobolus B. Huang & Y. Nie based on the molecular and morphological evidences (
Unfortunately, the type species of Conidiobolus, C. utriculosus Brefeld, had been missing for a long time. Therefore, C. coronatus was proposed as the epitype of Conidiobolus s.s. due to its prominence as a pathogenic fungus, its global distribution, and its usage as a model organism for fungal evolution (
Notably, not all species of Conidiobolus s.s. produce microspores, making it difficult to recognize them without phylogenetic data. These include C. dabieshanensis (
This study aims to describe and illustrate two new species of Conidiobolus s.s. based on their morphology and phylogenetic analyses. This study also details the diagnostic characteristics for species that were not observed to produce microspores, and the diversity of Conidiobolus s.s. found in China.
Plant debris was collected from Guniujiang National Nature Reserve, Qimen County and Shitai County, and Huoli Mountain, Ma,anshan City, Anhui Province, and Yangtianshan National Forest Park, Shandong Province. The strains of Conidiobolus s.s. were isolated from plant debris following the previous described methods (
The inverted Petri dishes were examined daily by a stereomicroscope (SMZ1500, Nikon Corporation, Japan). When a Conidiobolus-like fungus appeared, it was transferred to a new PDA plate to obtain a pure culture for morphological studies. The micro-morphological structure was observed using a light microscope (BX51, Olympus Corporation, Tokyo, Japan) and imaged using a microscope-camera system (DP25, Olympus Corporation, Tokyo, Japan). The morphological traits of the primary conidia and conidiophores, microconidia, resting spores etc. were described using the method by
Genomic DNA was extracted from fresh fungal mycelia which were scraped from PDA, using a modified cetyltrimethylammonium bromide (CTAB) protocol as described in
Polymerase chain reaction (PCR) amplification reactions contained 1 μL dNTPs (200 μM), 1 μL MgCl2 (2.5 mM), 10 µL Phusion HF buffer (5x), 1 μL primers each (0.5 μM), 100 ng genomic DNA, and 0.5 μL Taq polymerase (0.04 Unit/L, Super Pfx DNA Polymerase, Cowinbioscience Co. Ltd., Shanghai, China). PCR amplificated program followed
Species | Strains* | GenBank accession numbers | ||
---|---|---|---|---|
nucLSU | EFL | mtSSU | ||
Azygosporus macropapillatus | CGMCC 3.16068 (T) | MZ542006 | MZ555650 | MZ542279 |
parvus |
|
KX752051 | KY402207 | MK301192 |
Conidiobolus bifurcatus | CGMCC 3.15889 (T) | MN061285 | MN061482 | MN061288 |
C. brefeldianus | ARSEF 452 (T) | EF392382 | – | EF392495 |
C. chlamydosporus |
|
JF816212 | JF816234 | MK301178 |
C. coronatus | NRRL 28638 | AY546691 | DQ275337 | – |
RCEF 4518 | JN131537 | JN131543 | – | |
C. dabieshanensis | CGMCC 3.15763 (T) | KY398125 | KY402206 | MK301180 |
C. firmipilleus | ARSEF 6384 | JX242592 | – | JX242632 |
C. gonimodes |
|
JF816221 | JF816226 | MK301182 |
C. humicolus |
|
JF816220 | JF816231 | MK301184 |
C. incongruus | NRRL 28636 | AF113457 | – | – |
C. iuxtagenitus | ARSEF 6378 (T) | KC788410 | – | – |
RCEF 4445 | JX946695 | JX946700 | MK333391 | |
C. khandalensis |
|
KX686994 | KY402204 | MK301185 |
C. lichenicolus |
|
JF816216 | JF816232 | MK301186 |
C. longiconidiophorus sp. nov. | RCEF 6563 (T) | OQ540746 | OQ550509 | OQ540744 |
RCEF 6568 (T) | OR100884 | OR113355 | OR100881 | |
C. macrosporus |
|
KY398124 | KY402209 | MK301188 |
C. megalotocus |
|
MF616383 | MF616385 | MK301189 |
C. mycophagus |
|
JX946694 | JX946698 | MK301190 |
C. mycophilus |
|
KX686995 | KY402205 | MK301191 |
C. polyspermus |
|
MF616382 | MF616384 | MK301193 |
C. polysporus sp. nov. | RCEF 4500 | MG272478 | MG272476 | OR100882 |
RCEF 7058 (T) | OQ540747 | OQ550510 | OQ540745 | |
C. polytocus |
|
JF816213 | JF816227 | MK301194 |
C. taihushanensis | CGMCC 3.15900 (T) | MT250086 | MT274290 | MT250088 |
C. variabilis | CGMCC 3.15901 (T) | MT250085 | MT274289 | MT250087 |
Microconidiobolus nodosus |
|
JF816217 | JF816235 | MK333388 |
M. paulus | ARSEF 450 (T) | KC788409 | – | – |
M. terrestris |
|
KX752050 | KY402208 | MK301199 |
According to our previous studies (
The concatenated alignment utilized in this study comprised 1899 characters of nucLSU (1–984), EFL (985–1485), and mtSSU (1486–1899), out of which 986 characters are constant, 289 characters were found to be parsimony-uninformative and 624 characters were parsimony-informative. The best substitution model GTR+I+G was chosen for all the partitions during the ML and BI phylogenetic analyses. The final average standard deviation of the split frequencies was 0.00841, and the BI tree topology was found to be similar to that of ML. Therefore, the best scoring RAxML tree was used to represent the phylogenetic relationships among the studied taxa, with a final likelihood value of -13552.35 (Fig.
The phylogenetic tree of Conidiobolus s.s. constructed based on combined nucLSU, EFL and mtSSU sequences. Azygosporus and Microconidiobolus species were used as outgroups. New species are shown in red. Maximum Likelihood bootstrap values (≥70%) / Bayesian posterior probabilities (≥0.95) of clades are provided alongside the branches. The scale bar at the bottom left indicates substitutions per site.
Longiconidiophorus (Lat.), referring to the long size of its conidiophores.
Anhui Province, China.
Colonies on PDA at 21 °C after 3 d white, reaching ca 15 mm in diameter. Aerial hyphae flourishing after 6 d. Mycelia white, 5–10 μm wide, often unbranched at the edge of colony. Primary conidiophores often evolving from aerial hyphae, long, 150–340 × 6–9 μm, unbranched and producing a single primary conidium, without widening upward near the tip. Primary conidia forcibly discharged, globose, obovoid to ellipsoidal, 31–49 × 24–42 μm, papilla tapering and pointed, 7–13 μm wide, 3–7 μm long. Secondary conidiophores short or long, arising from primary conidia, bearing a single similar replicative conidium to primary conidia. Microspores not observed on the 2% water agar, but the structure similar to sterigmatas bearing microspores observed. Resting spores absent after 1 month.
Conidiobolus longiconidiophorus
forms a distinct phylogenetic clade from other Conidiobolus s.s. species. Morphologically, its primary condia are similar in size to those in C. coronatus (Cost.) Batko (14.5–38.5 × 17–48.5 μm), C. dabieshanensis Y. Nie & B. Huang (29–38 × 32.5–45), C. macrosporus Srin. & Thirum. (38–45 × 48–54 μm), C. megalotocus Srin. & Thirum. (30–50 μm), and C. utriculosus Brefeld (25–35 × 37.5–51 μm). However, it can be distinguished from C. coronatus and C. macrosporus by its longer primary conidiophores and the absence of resting spores (
Conidiobolus longiconidiophorus RCEF 6563 a colony on PDA after 3 d at 21 °C b colony on PDA after 6 d at 21 °C c mycelia unbranched at the edge of the colony d–g primary conidiophores bearing primary conidia h, i globose primary conidia j, k obovoid to ellipsoidal primary conidia l, m primary conidia bearing a single secondary conidium n, o structure similar to sterigmatas arsing from conidia. Scale bars: 100 μm (c); 20 μm (d–o).
Polysporus (Lat.), referring to several primary conidia arising from branched primary conidiophores.
Anhui and Shandong Provinces, China.
Colonies on PDA at 21 °C after 3 d white, reaching ca 20–23 mm in diameter. Mycelia colorless, rarely branched at the edge of colony, 8.8–13 μm wide, vegetative hyphae filamentous, frequently appearing pronouncedly vacuolated, 15–22 μm wide. Primary conidiophores often unbranched, producing a single primary conidium, without widening upward near the tip, but in some instances bifurcate thus bearing two primary conidia, or forming three conidiophores at the tip thus bearing three primary conidia, 68–270 × 11–19 μm. Primary conidia forcibly discharged, mostly globose, 42–55 × 33–45 μm, Papilla 7.5–14 μm wide, 4–12 μm long. Sometimes obovoid, up to 65 μm long. Secondary conidia arising from primary conidia, similar and smaller to the primary conidia. Microconidia rarely observed on the 2% water agar, globose to elongate ellipsoidal, 7.5–8.8×7.5–12.5 μm. Zygospores formed between adjacent segments after 15 days, smooth, mostly globose, less often ellipsoidal, 17.5–37 μm in diameter, with a 1–3 μm thick wall.
Conidiobolus polysporus
is characterized by several primary conidia (2–3) arising from conidiophores, which are similar to those in C. polytocus Drechsler and C. taihushanensis B. Huang & Y. Nie. However, C. polysporus has larger primary conidia (42–55 × 33–45 μm in C. polysporus vs. 14–29 × 12–25 μm in C. polytocus), and forms zygospores while resting spores are absent in C. polytocus (
Conidiobolus polysporus RCEF 7058 a colony on PDA after 3 d at 21 °C b mycelia unbranched at the edge of the colony c, d hyphae appearing pronouncedly vacuolated e, f unbranched primary conidiophores g, h branched primary conidiophpores i–k globose primary conidia l obovoid primary conidia m, n primary conidia bearing a single secondary conidium o–q microconidia arising from a conidium r, s zygospores formed between adjacent segments of the same hypha t, u zygospores. Scale bars: 100 μm (b); 20 μm (c–u).
Although the family Conidiobolaceae was originally proposed to include three genera, Azygosporus, Conidiobolus s.s., and Microconidiobolus, recent phylogenetic analyses by
Conidiobolus polysporus
is known to produce 2–3 primary conidia arising from branched primary conidiophores. Similar branched primary conidiophores have also been observed in C. gonimodes (
Interestingly, we found that C. iuxtagenitus was located at the bottom of the phylogenetic tree and was distinct from other Conidobolus s.s. members. C. iuxtagenitus is characterized by an absence of microspore and its zygospores formed by a short beak near a lateral conjugation (
In this study, we introduce two new species of Conidiobolus s.s. species, namely C. longiconidiophorus and C. polysporus, based on morphological and phylogenetic evidence. These findings expand the number of known Conidiobolus s.s. species to 20.
This study was supported by the National Natural Science Foundation of China (Nos. 31900008, 30770008 and 31970009). We also thank the editor and anonymous reviewer for their valuable comments.
The authors have declared that no competing interests exist.
No ethical statement was reported.
This study was supported by the National Natural Science Foundation of China (Nos. 31900008, 30770008 and 31970009).
Writing—original draft preparation, Y.N.; investigation and resources, Y.C.; software, H.Z.; methodology, Z.-Y.Z and C.-W.Z; writing—review and editing, conceptualization and supervision, X.-Y.L and B.H. All authors have read and agreed to the published version of the manuscript.
Yong Nie https://orcid.org/0000-0001-8964-1661
Yue Cai https://orcid.org/0000-0002-4970-9673
Heng Zhao https://orcid.org/0000-0003-2938-5613
ZhengYu Zhou https://orcid.org/0000-0001-9312-1626
ChangWei Zhao https://orcid.org/0009-0007-7573-346X
XiaoYong Liu https://orcid.org/0000-0002-8808-010X
All of the data that support the findings of this study are available in the main text.