Research Article |
Corresponding author: Jian-Kui Liu ( ljiankui@gmail.com ) Academic editor: Nalin Wijayawardene
© 2023 Wen-Li Li, Rui-Ru Liang, Asha J. Dissanayake, Jian-Kui Liu.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Li W-L, Liang R-R, Dissanayake AJ, Liu J-K (2023) Botryosphaerialean fungi associated with woody oil plants cultivated in Sichuan Province, China. MycoKeys 97: 71-116. https://doi.org/10.3897/mycokeys.97.103118
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Woody oil plants are important economic trees which are widely cultivated and distributed throughout China. Surveys conducted during 2020 and 2021 on several woody oil plantations from five regions of Sichuan Province, China, revealed a high diversity of Botryosphaerialean fungi. The identification of 50 botryosphaeriaceous isolates was carried out based on both morphology and multi-gene phylogenetic analysis of internal transcribed spacer region (ITS), translation elongation factor 1-alpha gene (tef1) and β-tubulin gene (tub2). This allowed the identification of twelve previously known Botryosphaeriales species: Aplosporella prunicola, A. ginkgonis, Barriopsis tectonae, Botryosphaeria dothidea, Bo. fabicerciana, Diplodia mutila, Di. seriata, Dothiorella sarmentorum, Neofusicoccum parvum, Sardiniella guizhouensis, Sphaeropsis citrigena, and Sp. guizhouensis, and four novel species belonging to the genera Diplodia and Dothiorella, viz. Di. acerigena, Di. pistaciicola, Do. camelliae and Do. zanthoxyli. The dominant species isolated across the surveyed regions were Botryosphaeria dothidea, Sardiniella guizhouensis and Diplodia mutila, representing 20%, 14% and 12% of the total isolates, respectively. In addition, most isolates were obtained from Pistacia chinensis (14 isolates), followed by Camellia oleifera (10 isolates). The present study enhances the understanding of Botryosphaeriales species diversity on woody oil plants in Sichuan Province, China.
Botryosphaeriales, diversity, new species, phylogeny, taxonomy
Botryosphaeriaceae is a diverse group of fungi that includes endophytes, saprobes and plant pathogens (
The members of Botryosphaeriaceae have been taxonomically characterized based on both sexual and asexual morphs. The production of large, ovoid to oblong, typically hyaline, aseptate ascospores, which may become brown and septate with age, as well as bitunicate asci within unilocular or multilocular botryose ascomata known as pseudothecia is typical to the sexual state (
The geographic distribution and host range of botryosphaeriaceous taxa are diverse. Seven genera in Botryosphaeriaceae: Botryosphaeria, Diplodia, Dothiorella, Lasiodiplodia, Neodeightonia, Neofusicoccum and Phaeobotryon are common and frequently reported from various geographical regions (
Woody oil plants are economically important as they are used for the production of cooking and industrial oil. Recently, many Botryosphaeriaceae species have been frequently reported on woody oil plants. Diplodia olivarum was first reported from rotting olive drupes in Italy (
The isolates in this study were collected from the woody oil tree plantations in Sichuan Province during the period of 2020 and 2021. The hosts include Acer truncatum, Camellia oleifera, Idesia polycarpa, Olea europaea, Paeonia suffruticosa, Pistacia chinensis, Vernicia fordii and Zanthoxylum bungeanum. The samples were collected from decayed stems, branches and twigs of woody oil trees. Mature fruiting bodies were selected for fungal isolation and for morphological observations under stereo microscope Motic SMZ 168 series. Measurements were made with Tarosoft Image Frame Work program v. 0.9.7 (
Herbarium specimens were stored in the herbarium of
Cryptogams Kunming Institute of Botany, Academia Sinica (KUN-HKAS) and duplicated at
Herbarium, University of Electronic Science and Technology (HUEST), Chengdu, China. Living cultures were deposited at
China General Microbiological Culture Collection Centre (
The total genomic DNA was extracted from 7day-old isolates grown on 2% PDA median at 25 °C, using the EZ geneTM fungal gDNA kit (GD2416), following the manufacturer’s instructions and protocols. Partial gene sequences were determined for the internal transcribed spacer 1 and 2 including the intervening 5.8S nrDNA gene (ITS), the nuclear ribosomal 28s large subunit (LSU), the translation elongation factor 1-alphagene (tef1), and the β-tubulin gene (tub2). The primers used for amplification are ITS5/ITS4 for ITS (
All newly generated sequences in this study. Ex-type strains are indicated with *. N/A: Not available.
Taxon | Stain Number | GenBank Accession Number | ||
---|---|---|---|---|
ITS | tef1 | tub2 | ||
Aplosporella ginkgonis | UESTCC 22.0091 | OQ190504 | OQ241438 | N/A |
Aplosporella prunicola | UESTCC 22.0090 | OQ190505 | N/A | N/A |
Barriopsis tectonae | UESTCC 22.0092 | OQ190506 | OQ241439 | N/A |
Botryosphaeria dothidea | UESTCC 22.0111 | OQ190507 | OQ241440 | N/A |
UESTCC 22.0109 | N/A | OQ241441 | N/A | |
UESTCC 22.0112 | OQ190508 | OQ241442 | N/A | |
UESTCC 22.0113 | OQ190509 | OQ241443 | N/A | |
UESTCC 22.0108 | OQ190510 | OQ241444 | N/A | |
UESTCC 22.0116 | OQ190511 | OQ241445 | N/A | |
UESTCC 22.0114 | OQ190512 | OQ241446 | N/A | |
UESTCC 22.0115 | OQ190513 | OQ241447 | N/A | |
UESTCC 22.0110 | OQ190514 | OQ241448 | N/A | |
UESTCC 22.0107 | OQ190515 | OQ241449 | N/A | |
Botryosphaeria fabicerciana | UESTCC 22.0117 | OQ190516 | OQ241450 | N/A |
UESTCC 22.0118 | OQ190517 | OQ241451 | N/A | |
Diplodia acerigena* |
|
OQ190518 | OQ241452 | N/A |
Diplodia acerigena | UESTCC 22.0074 | OQ190519 | OQ241453 | OQ338163 |
UESTCC 22.0075 | OQ190520 | OQ241454 | OQ338164 | |
Diplodia mutila | UESTCC 22.0064 | OQ190521 | OQ241455 | OQ338165 |
UESTCC 22.0065 | OQ190522 | OQ241456 | OQ338166 | |
UESTCC 22.0069 | OQ190523 | OQ241457 | OQ338167 | |
UESTCC 22.0068 | OQ190524 | OQ241458 | OQ338168 | |
UESTCC 22.0067 | OQ190525 | OQ241459 | OQ338169 | |
UESTCC 22.0063 | OQ190526 | OQ241460 | OQ338170 | |
Diplodia pistaciicola * |
|
OQ190527 | OQ241461 | OQ338171 |
Diplodia pistaciicola | UESTCC 22.0071 | OQ190528 | OQ241462 | OQ275062 |
Diplodia seriata | UESTCC 22.0072 | OQ190529 | OQ241463 | N/A |
Dothiorella camelliae | UESTCC 22.0080 | OQ190530 | N/A | OQ275063 |
Dothiorella camelliae * |
|
OQ190531 | OQ241464 | OQ275064 |
Dothiorella camelliae | UESTCC 22.0079 | OQ190532 | OQ241465 | OQ275065 |
UESTCC 22.0078 | OQ190533 | OQ241466 | OQ275066 | |
Dothiorella sarmentorum | UESTCC 22.0076 | OQ190534 | N/A | OQ275067 |
UESTCC 22.0077 | OQ190535 | OQ241467 | OQ275068 | |
Dothiorella zanthoxyli * |
|
OQ190536 | OQ241468 | OQ275069 |
Dothiorella zanthoxyli | UESTCC 22.0083 | OQ190537 | OQ241469 | OQ275070 |
UESTCC 22.0084 | OQ190538 | OQ241470 | OQ275071 | |
Neofusicoccum parvum | UESTCC 22.0096 | OQ190539 | OQ241471 | N/A |
UESTCC 22.0094 | OQ190540 | N/A | N/A | |
UESTCC 22.0093 | OQ190541 | N/A | N/A | |
UESTCC 22.0095 | OQ190542 | N/A | N/A | |
Sardiniella guizhouensis | UESTCC 22.0100 | OQ190543 | OQ241472 | N/A |
UESTCC 22.0101 | OQ190544 | OQ241473 | N/A | |
UESTCC 22.0099 | OQ190545 | OQ241474 | N/A | |
UESTCC 22.0097 | OQ190546 | OQ241475 | N/A | |
UESTCC 22.0098 | OQ190547 | OQ241476 | N/A | |
UESTCC 22.0102 | OQ190548 | OQ241477 | N/A | |
UESTCC 22.0103 | OQ190549 | OQ241478 | N/A | |
Sphaeropsis citrigena | UESTCC 22.0106 | OQ190550 | OQ241479 | N/A |
Sphaeropsis citrigena | UESTCC 22.0105 | OQ190551 | OQ241480 | N/A |
Sphaeropsis guizhouensis | UESTCC 22.0104 | OQ190552 | OQ241481 | N/A |
Sequence data for phylogenetic analyses were obtained from GenBank and from recent publications regarding Botryosphaeriaceae fungi (
ML analyses was performed using RAxML (
Bayesian analyses was performed in MrBayes 3.2.6 (
Trees were visualized with FigTree v1.4.0 (
A concatenated dataset of ITS and tef1 was used to determine the phylogenetic position of Aplosporellaceae and Botryosphaeriaceae isolates obtained in this study. Combined sequences of ITS and tef1 were used for the analyses of Botryosphaeria, while ITS, tef1 and tub2 were used for the analyses of Diplodia and Dothiorella isolates. All details of the alignments are provided in Table
Alignment details and ML, BI analyses results of each phylogenetic tree constructed in this study.
Character | Overview phylogenetic tree | Botryosphaeria | Diplodia | Dothiorella | |
---|---|---|---|---|---|
Number of base pairs in each gene region (including the gaps after alignment) | ITS (603 bp), tef1 (320 bp) | ITS (555 bp), tef1 (315 bp) | ITS (537 bp), tef1 (311 bp), tub2 (381 bp) | ITS (523 bp), tef 1 (294 bp), tub2 (427 bp) | |
Number of isolates obtained in this study | 17 | 12 | 11 | 9 | |
Number of taxa originated from GenBank | 94 | 45 | 64 | 73 | |
Outgroup taxa | Lecanosticta acicula (LNPV252) | Barriopsis iraniana (IRAN1448C) and Barriopsis iraniana (IRAN1449C) | Dothiorella dulcispinae (CMW 36460) and Dothiorella dulcispinae (CMW 36462) | Neofusicoccum luteum (CBS 562.92) and Neofusicoccum luteum (CMW 41365) | |
BI (model of each gene region) | ITS | GTR+I+G | SYM | K80+I+G | HKY+I+G |
tef1 | GTR+I+G | HKY+G | GTR+G | GTR+G | |
tub2 | – | – | GTR+G | GTR+I+G |
In an overview phylogenetic tree (Fig.
Phylogram generated from RAxML analysis based on combined ITS and tef1 sequence data of Botryosphaeriaceae and Aplosporellaceae isolates. The tree was rooted to Lecanosticta acicula (LNPV 252). The ML (≥ 75%) and BI (≥ 95%) bootstrap supports are given near the nodes, respectively. Isolates from this study are marked in red and ex-type strains are marked in bold.
Three individual phylogenetic trees were constructed for the genera Botryosphaeria, Diplodia and Dothiorella. Twelve isolates belonged to the genus Botryosphaeria and ten of them were nested with Bo. dothidea, while the remaining two isolates clustered with Bo. fabicerciana (Fig.
Phylogram generated from RAxML analysis based on combined ITS and tef1 sequence data of Botryosphaeria isolates. The tree was rooted to Barriopsis iraniana (IRAN1448C and IRAN1449C). The ML (≥ 75%) and BI (≥ 95%) bootstrap supports are given near the nodes, respectively. Isolates from this study are marked in red and ex-type strains are marked in bold.
Phylogram generated from RAxML analysis based on combined ITS, tef1 and tub2 sequence data of Diplodia isolates. The tree was rooted to Dothiorella dulcispinae (CMW 36460 and CMW 36462). The ML (≥ 75%) and BI (≥ 95%) bootstrap supports are given near the nodes, respectively. Isolates from this study are marked in red and ex-type strains are marked in bold.
Phylogram generated from RAxML analysis based on combined ITS, tef1 and tub2 sequence data of Dothiorella isolates. The tree was rooted to Neofusicoccum luteum (CBS 562.92 and CMW 41365). The ML (≥ 75%) and BI (≥ 95%) bootstrap supports are given near the nodes, respectively. Isolates from this study are marked in red and ex-type strains are marked in bold.
Saprobic on decaying branches of Zanthoxylum bungeanum. Sexual morph: Not observed. Asexual morph: Coelomycetous, Conidiomata 558–657 × 216–241 μm (x̄ = 235.5 × 228.5 μm, n = 10), immersed, partially erumpent when mature, multilocular, locules separated by pale brown cells of textura angularis. Peridium 65–106 μm wide, wall 6–10 cell-layers thick, outer layers composed of 3–4 layers of pale brown cells of textura globulosa, intermediate layers composed of dark brown cells of textura angularis, becoming pale brown towards the inner region. Ostiole 138–171 μm diam., central. Conidiophores reduced to conidiogenous cells. Conidiogenous cells 12–13 × 7.5–8 μm (x̄ = 12.5 × 8 μm, n = 20), holoblastic, hyaline, cylindrical to doliiform, smooth-walled. Conidia 17–20 × 6.5–7.5 μm (x̄ = 18.5 × 7 μm, n = 30), L/W ratio = 2.5, ellipsoidal to subcylindrical, with both ends rounded, initially hyaline, becoming dark brown, aseptate.
Aplosporella ginkgonis (HUEST 22.0092, new host record) a–c appearance of conidiomata on natural substrate d vertical section of conidioma e section of peridium f conidiogenous cells and developing conidia g–k brown aseptate conidia l upper view of the colony on PDA after 14 d m reverse view of the colony on PDA after 14 d. Scale bars: 100 μm (d); 40 μm (e); 10 μm (f–k).
Colonies on PDA developing dense aerial mycelium with age, becoming white to gray-brown at the surface, and whitish to yellowish brown at the reverse, producing a brown pigment, with sinuate edges.
China, Sichuan Province, Yaan City, Hanyuan County, 29°16'51"N, 102°37'48"E, elevation 1,689 m, on dead branches of Zanthoxylum bungeanum, 30th October 2021, W.L. Li, HJ 511 (HUEST 22.0092), living culture UESTCC 22.0091.
Aplosporella ginkgonis was introduced by
Saprobic on decaying branches of Zanthoxylum bungeanum. Sexual morph: Not observed. Asexual morph: Coelomycetous, Conidiomata 355–408 × 568.5–599 μm (x̄ = 381.5 × 584 μm, n = 10), immersed, partially erumpent when mature, multilocular, locules divided by pale brown cells of textura angularis. Peridium 107–122 μm wide, composed of 3–5 layers of pale brown cells of textura globulosa. Ostiole 70–88 μm diam., central. Conidiophores reduced to conidiogenous cells. Conidiogenous cells 6.5–10 × 2–3 μm (x̄ = 8 × 2.5 μm, n = 20), holoblastic, hyaline, cylindrical, smooth-walled. Conidia 20–23.5 × 12–13.5 μm (x̄ = 21.5 × 13 μm, n = 30), L/W ratio = 1.6, ellipsoidal to subcylindrical, with both ends broadly rounded, initially hyaline, becoming dark brown, aseptate, smooth.
Aplosporella prunicola (HUEST 22.0091, new host record) a, b appearance of conidiomata on natural substrate c vertical section of multiloculate conidioma d, e section of peridium f–i conidiogenous cells and developing conidia j–n brown aseptate conidia. Scale bars: 100 μm (c); 20 μm (d, e); 10 μm (f–n).
Colonies on PDA after 7 d, becoming pale olivaceous-gray to olivaceous-black at the surface, and olivaceous black at the reverse, with irregular edges.
China, Sichuan Province, Yaan City, Hanyuan County, 29°16'51"N, 102°37'48"E, elevation 1,689 m, on dead branches of Zanthoxylum bungeanum, 30th October 2021, W.L Li, HJ 509 (HUEST 22.0091), living culture UESTCC 22.0090.
Our isolate UESTCC 22.0090 morphologically lines up with the description of Aplosporella prunicola provided by
The epithet ‘‘acerigena’’ refers to the host genus Acer, on which the holotype was collected.
HKAS 125891.
Saprobic on decaying branches of Acer truncatum. Sexual morph: Ascomata 304.5–321 × 217–260 (x̄ = 313 × 238.5 μm, n = 20), more or less subglobose, solitary or gregarious, semi-immersed, medium brown to dark brown, unilocular, papillate, ostiolate. Ostiole 101–115 μm diam., conical or circular, central, papillate, periphysate. Peridium 23–29 μm wide, composed of 3–5 layers of dark brown cells of textura angularis. Pseudoparaphyses 3.5–5 μm wide, hyaline, branched, septate. Asci 98–120 × 24–32.5 μm (x̄ = 109 × 28 μm, n = 30), (4–)8-spored, clavate, stipitate, irregularly bitunicate, apex rounded with an ocular chamber. Ascospores 24.5–31.5 × 13.5–16 μm (x̄ = 28 × 14.5 μm, n = 30), L/W ratio = 2, biseriate, broadly fusiform to oval, widest in the middle, both ends obtuse, hyaline, moderately thick-walled, smooth, becoming brown and 2-septate when aged. Asexual morph: Coelomycetous, pycnidia produced on mycelium in PDA. Conidiomata stromatic, mostly solitary, gray to black, globose to subglobose. Paraphyses 2–3.5 μm wide, hyaline, subcylindrical, branched, septate. Conidiophores absent. Conidiogenous cells 9–12 × 3.5–5 μm (x̄ = 10.5 × 4.5 μm, n = 20), holoblastic, hyaline, cylindrical. Conidia 21–24 × 10–11 μm (x̄ = 22.5 × 10.5 μm, n = 30), L/W ratio = 2, aseptate, thick-walled, wall externally smooth, roughened on the inner surface, initially hyaline becoming dark brown, obovoid to ellipsoid, both ends broadly rounded. Spermatogenous cells 7–9.5 × 2.5–3.5 μm (x̄ = 8 × 3 μm, n = 20), discrete or integrated, hyaline, smooth, cylindrical, holoblastic or proliferating via. determinate phialides with periclinal thickening. Spermatia 7–11.5 × 3–4 μm (x̄ = 9 × 3.5 μm, n = 30), hyaline, smooth, aseptate, rod-shaped with rounded ends.
The sexual morph of Diplodia acerigena (HKAS 125891, holotype) a, b appearance of ascomata on natural substrate c vertical section of ascoma d ostiole e section of peridium f–h asci with hyaline ascospores i asci with brown 2-sepatate ascospores j, k hyaline immature aseptate ascospores l–n mature brown 2-septate ascospores o germinated ascospore p upper view of the colony on PDA after 14 d q reverse view of the colony on PDA after 14 d. Scale bars: 100 μm (c); 10 μm (d, e, j–o); 20 μm (f–i).
Ascospores germinating on PDA within 12 h. Colonies growing on PDA, reaching a diam. of 4 cm after five days at 25 °C, effuse, velvety, with entire to slightly undulate edge. Surface initially white and later turning dark olivaceous from the surrounding of the colony and dark gray in reverse.
The asexual morph of Diplodia acerigena (HKAS 125891, holotype) a–d appearance of conidiomata on PDA e–i conidiogenous cells and developing conidia j, k hyaline immature conidia l–o mature brown aseptate conidia p–t Spermatogenous cells and Spermatia. Scale bars: 10 μm (e–o, t); 5 μm (p–s).
China, Sichuan Province, Chengdu City, Pidu District, 30°19'57"N, 103°59'47"E, elevation 442 m, on dead branches of Acer truncatum (Anacardiaceae), 19th March 2021, W.L Li, YBF 96 (HKAS 125891, holotype), ex-type living culture UESTCC 22.0073 =
Three isolates of Diplodia acerigena clustered closer to Di. pseudoseriata (CBS 124906) with high bootstrap support (ML/BI 100%/1). The asexual morph of Diplodia pseudoseriata was introduced by
Sphaeria mutila Fr., Syst. Mycol. (Lundae) 2: 424. 1823. Basionym.
≡ Physalospora mutila (Fr.) N.E. Stevens, Mycologia 28: 333. 1936.
= Botryosphaeria stevensii Shoemaker, Canad. J. Bot. 42: 1299. 1964.
Saprobic on decaying branches of Camellia oleifera. Sexual morph: Not observed. Asexual morph: Coelomycetous, Conidiomata 330–394 × 215–230 μm (x̄ = 362 × 223 μm, n = 10), immersed, erumpent, gregarious, dark brown to black, subglobose, unilocular. Ostiole 48.5–67 μm diam., central. Peridium 29–38 μm wide, thick-walled, outer and inner layers composed of 1–2 layers dark brown textura angularis, intermediate layers composed of 3–5 layers of hyaline cells of textura angularis. Conidiophores reduced to conidiogenous cells. Conidiogenous cells 8.5–12 × 3–5 μm (x̄ = 10 × 4 μm, n = 20), cylindrical, thin-walled, hyaline, holoblastic, indeterminate, proliferating at the same level to produce periclinal thickenings, or proliferating percurrently giving rise to 2–3 indistinct annellations. Conidia 19–21 × 9.5–11 μm (x̄ = 20 × 10.5 μm, n = 30), L/W ratio = 2, oblong, with broadly rounded apex and truncate base, thick-walled, wall externally smooth, roughened on the inner surface, hyaline, aseptate, becoming dark brown when aged.
Diplodia mutila (HUEST 22.0069, new host record) a, b appearance of conidiomata on natural substrate c vertical section of conidioma d ostiole e section of peridium f–i conidiogenous cells and developing conidia j hyaline immature conidium k–n mature brown conidia. Scale bars: 40 μm (c); 20 μm (d, e); 10 μm (f–n).
Colonies on PDA initially olivaceous buff in the center of the colony and white at the edge, becoming olivaceous within 7 d on the surface, with smooth edge.
China, Sichuan Province, Jiangyou City, Shuanghe County, 31°54'10"N, 104°55'57"E, elevation 657 m, on dead branches of Camellia oleifera, 11th July 2021, W.L Li, 286 (HUEST 22.0069), living culture UESTCC 22.0068; ibid., 289 (HUEST 22.0068), living culture UESTCC 22.0067; ibid., Guangyuan city, Qingchuan County, 32°40'38"N, 105°28'57"E, elevation 634 m, on dead branches of Olea europaea, 20th April 2021, W.L Li, 188 (HUEST 22.0065), living culture UESTCC 22.0064; ibid., 257 (HUEST 22.0070), living culture UESTCC 22.0069; ibid., on dead branches of Vernicia fordii, 20th April 2021, W.L Li, 238 (HUEST 22.0066), living culture UESTCC 22.0065; ibid., Chengdu City, Pidu District, 30°49'27"N, 103°47'42"E, elevation 442 m, on dead branches of Pistacia chinensis, 5th March 2021, W.L Li, A61 (HUEST 22.0064), living culture UESTCC 22.0063. Additional sequences: LSU: OQ164832 (UESTCC 22.0063), OQ164830 (UESTCC 22.0064), OQ164831 (UESTCC 22.0065).
The phylogenetic tree show that six strains isolated from Camellia oleifera, Olea europaea and Vernicia fordii nested with Diplodia mutila (CBS 112553) with a moderate bootstrap support (ML/BI 86%/1). Diplodia mutila, the type of the genus, is a well-known and most commonly reported species. It has been recorded mainly from woody substrates, and it is known from more than 50 hosts (
The epithet ‘‘pistaciicola’’ refers to the host genus Pistacia, on which the holotype was collected.
HKAS 125890.
Saprobic on decaying branches of Pistacia chinensis. Sexual morph: Not observed. Asexual morph: Coelomycetous, Conidiomata 353–441 × 274.5–316 μm (x̄ = 397 × 295 μm, n = 10), immersed, forming split-like opening on the host, solitary or gregarious, globose to subglobose, dark brown to black, unilocular, papillate, ostiolate. Ostiole 38–49.5 μm diam., conical or circular, centrically located. Peridium 42–60 μm wide, composed of thick walled, dark brown to hyaline cells of textura angularis. Conidiophores reduced to conidiogenous cells. Conidiogenous cells 10–14 × 3–4 μm (x̄ = 12 × 3.5 μm, n = 20), holoblastic, discrete, cylindrical, hyaline, smooth, indeterminate, arising from the inner cavity of the conidiomata. Conidia 24.5–27 × 11–13 μm (x̄ = 25.5 × 12 μm, n = 30), L/W ratio = 2.2, ellipsoid to obovoid, aseptate, hyaline, thick-walled, guttulate.
Diplodia pistaciicola (HKAS 125890, holotype) a–c appearance of conidiomata on natural substrate d, e vertical section of conidiomata/conidioma f ostiole g section of peridium h–l conidiogenous cells and developing conidia m–q hyaline aseptate conidia. Scale bars: 200 μm (d); 50 μm (e); 20 μm (f, g); 10 μm (h–q).
Conidia germinate on PDA within 12 h. Colonies growing on PDA, reaching a diameter of 4 cm after five days at 25 °C, effuse, velvety, with entire to slightly undulate edge. The early stage of the colony is white, later turning dark olivaceous and dark gray in reverse.
China, Sichuan Province, Chengdu City, Pidu District, 30°49'27"N, 103°47'42"E, elevation 442 m, on dead branches of Pistacia chinensis (Anacardiaceae), 5th March 2021, W.L Li, 049 (HKAS 125890, holotype), ex-type living culture UESTCC 22.0070 =
Phylogenetic analyses showed that two strains of Diplodia pistaciicola isolated from Pistacia chinensis are distinct but closely related to Di. agrifolia (CBS 124.30). The comparison of ITS, tef1 and tub2 of these two species indicate 5 bp (502), 3bp (224), 9 bp (425) differances, respectively. Morphologically, Di. agrifolia differs from Di. pistaciicola in producing two to three times larger ascomata than that of Di. pistaciicola (721–836 vs. 274.5–316 μm) and possessing smaller conidia (27–36.5 × 14.5–17.8 μm vs. 24.5–27 × 11–13 μm). In addition, conidia of Di. pistaciicola are hyaline, aseptate, rarely becoming pale brown and uniseptate with age, whereas conidia of Di. agrifolia are mostly dark brown and uniseptate before discharge from pycnidia.
Saprobic on decaying branches of Camellia oleifera. Sexual morph: Ascomata 301–343 × 293–340 (x̄ = 322 × 316 μm, n = 10), more or less subglobose, solitary or gregarious, semi-immersed, medium brown to dark brown, unilocular, papillate, ostiolate. Ostiole 72–78 μm diam., conical or circular, central, papillate, periphysate. Peridium 33–44 μm wide, composed of dark brown, 4–6 layers of textura angularis. Pseudoparaphyses 2–2.5 μm wide, hyaline, branched, septate. Asci 112–141 × 27.5–30 μm (x̄ = 126 × 28.5 μm, n = 30), clavate, stipitate, bitunicate, containing eight, biseriate ascospores. Ascospores 31.5–32.5 × 12–13.5 μm (x̄ = 32 × 13 μm, n = 30), L/W ratio = 2.5, broadly fusiform to oval, widest in the middle, both ends obtuse, hyaline, moderately thick-walled, smooth, becoming brown when aged. Asexual morph: Not observed.
Ascospores germinate on PDA within 12 h. Colonies growing on PDA, reaching a diameter of 4 cm after five days at 25 °C, effuse, velvety, with entire to slightly undulate edge.
China, Sichuan Province, Jiangyou City, shuanghe County, 31°54'10"N, 104°55'57"E, elevation 656 m, on dead branches of Camellia oleifera, 10th June 2021, W.L Li, 288 (HUEST 22.0073), living culture UESTCC 22.0072.
The morphology of the taxa isolated from decaying woody oil plants is similar to Diplodia seriata. In the multi-gene phylogenetic analysis, our new collection clustered with the ex-type strain of Di. seriata (CBS 112555) with strong bootstrap support. Diplodia seriata has been isolated from a wide range of hosts (121 species) and has a worldwide distribution (reported in 46 countries) (
The epithet ‘‘camelliae’’ refers to the host genus Camellia, on which the holotype was collected.
HKAS 125892.
Saprobic on decaying branches of Camellia oleifera. Sexual morph: Ascomata 199–222 × 237–269 μm (x̄ = 210.5 × 253 μm, n = 10), submerged in the substrate, partly erumpent at maturity, solitary or gregarious, dark brown to black, subglobose, multilocular or unilocular. Ostiole 17–37 μm diam., central. Peridium 35–43 μm wide, thick-walled, outer layers composed of 1–2 layers dark brown cells of textura angularis, becoming hyaline towards the inner region. Pseudoparaphyses 3–4 μm wide, hyaline, frequently aseptate. Asci 80–96 × 22–25 μm (x̄ = 88 × 23.5 μm, n = 30), stipitate, clavate, thick-walled, bitunicate, (6–)8-spored, irregularly biseriate. Ascospores 21–25 × 9.5–12 μm (x̄ = 23 × 10.5 μm, n = 30), L/W ratio = 2, oblong, ovate to sub-clavate, (0–)1-septate, slightly constricted at the septum, hyaline to dark brown, moderately thick-walled, straight or inequilateral, basal cell tapering towards the acute end. Asexual morph: Not observed.
Ascospores germinate on PDA within 12 h. Colonies growing on PDA, reaching a diameter of 4 cm after five days at 25 °C, effuse, velvety, with entire to slightly undulate edge. Surface initially white and later turning dark olivaceous from the surrounding of the colony and dark gray in reverse.
China, Sichuan Province, Leshan City, Wutongqiao District, 29°22'28"N, 103°45'49"E, elevation 383 m, on dead branches of Camellia oleifera (Theaceae), 23th July 2021, Z.P Liu, 351 (HKAS 125892, holotype), ex-type living culture UESTCC 22.0081 =
Four strains isolated from Vernicia fordii and Camellia oleifera occupy a basal position in the Dothiorella phylogenetic tree by forming a well‐supported subclade sister to Do. zanthoxyli (ML/BI 97%/1, Fig.
A morphological comparison of the sexual morph of three Dothiorella species.
Taxa | Ascomata (μm) | Asci (μm) | Peridium (μm) | Ascospores | ||
---|---|---|---|---|---|---|
Size(μm) | Color | L/W ratio | ||||
Dothiorella camelliae | 199–222 × 237–269 | 80–96 × 22–25 | 35–43 | 21–25 × 9.5–12 | Hyaline to dark brown | 2 |
Dothiorella sarmentorum | 350–400 | 140–210 × 17–24 | 50–75 | 24.5–25.5 × 11.5–12.5 | Dark brown | 2.4 |
Dothiorella zanthoxyli | 258–280 × 170–174 | 63.5–77 × 20–24.5 | 35–40 | 22.5–25 × 9.5–11 | Hyaline to dark brown | 2.6 |
Sphaeria sarmentorum Fr., K. svenska Vetensk-Acad. Handl. 39: 107. 1818. Basionym.
≡ Diplodia sarmentorum (Fr.) Fr., Summ. veg. Scand. (Stockholm) 2: 417. 1849.
= Diplodia pruni Fuckel, Jahrb. Nassauischen Vereins Naturk., 23–24: 169. 1870 [1869].
= Botryosphaeria sarmentorum A.J.L. Phillips, J. Luque & A. Alves, Mycologia 97: 522. 2005.
Saprobic on decaying branches of Pistacia chinensis. Sexual morph: Not observed. Asexual morph: Conidiomata 278–338 × 240–280 μm (x̄ = 308 × 260 μm, n = 10), immersed, erumpent, forming split-like opening on the host, gregarious, globose to subglobose, dark brown to black, unilocular or multilocular, papillate, ostiolate. Ostiole 52–57 μm diam., conical or circular, centrically located. Peridium 28.5–44 μm, comprising 5–8 layers of thick‐walled, dark brown to hyaline cells arranged in a textura angularis. Conidiophores reduced to conidiogenous cells. Conidiogenous cells 2.5–3.5 × 6–9 μm (x̄ = 3 × 7.5 μm, n = 20), holoblastic, discrete, cylindrical, hyaline, smooth, indeterminate, proliferating at the same level giving rise to periclinal thickenings, or rarely proliferating percurrently to form one or two close, indistinct annellations. Conidia 21.5–24 × 9–10 μm (x̄ = 22.5 × 9.5 μm, n = 30), L/W ratio = 2.4, ellipsoid to obovoid, with rounded ends, initially hyaline and aseptate becoming pigmented brown and 1-septate often while still attached to conidiogenous cell, brown walled, slightly constricted at the septum.
Conidia germinate on PDA within 12 h. Colonies growing on PDA, reaching a diameter of 4 cm after three days at 25 °C, effuse, velvety, with entire to slightly undulate edge. Surface initially white and later turning dark olivaceous from the surrounding of the colony and dark gray in reverse.
China, Sichuan Province, Chengdu City, Pidu District, 30°19'57"N, 103°59'47"E, elevation 442 m, on dead branches of Pistacia chinensis, 19th March 2021, W.L Li, 072 (HUEST 22.0077), living culture UESTCC 22.0076; ibid., Guangyuan City, Qingchuan County, 32°40'38"N, 105°28'57"E, elevation 638 m, 20th April 2021, W.L Li, A189 (HUEST 22.0078), living culture UESTCC 22.0077. Additional sequences: LSU: OQ164837 (UESTCC 22.0076), OQ164838 (UESTCC 22.0077).
Dothiorella sarmentorum was introduced by
The epithet ‘‘zanthoxyli’’ refers to the host genus Zanthoxylum, on which the holotype was collected.
HKAS 125893.
Saprobic on decaying branches of Zanthoxylum bungeanum. Sexual morph: Ascomata 258–280 × 170–174 μm (x̄ = 269 × 172 μm, n = 10), submerged in the substrate, partly erumpent at maturity, solitary or gregarious, dark brown to black, subglobose, unilocular. Ostiole 42–44 μm diam., central. Peridium 35–40 μm wide, thick-walled, outer layers composed of 3–5 layers dark brown cells of textura angularis, becoming hyaline towards the inner region. Pseudoparaphyses 3–4.5 μm wide, hyaline, frequently aseptate. Asci 63.5–77 × 20–24.5 μm (x̄ = 70 × 22.5 μm, n = 30), short stipe, clavate, thick-walled, bitunicate, 8-spored, irregularly biseriate. Ascospores 22.5–25 × 9.5–11 μm (x̄ = 24 × 10 μm, n = 30), L/W ratio = 2.6, oblong, ovate to sub-clavate, (0–)1-septate, slightly constricted at the septum, hyaline to dark brown, moderately thick-walled, straight or inequilateral, basal cell tapering towards the acute end. Asexual morph: Not observed.
Ascospores germinate on PDA within 12 h. Colonies growing on PDA, reaching a diameter of 4 cm after five days at 25 °C, effuse, velvety, with entire to slightly undulate edge. Surface initially white and later turning dark olivaceous from the surrounding of the colony. Dark gray in reverse.
China, Sichuan Province, Yanan City, Hanyuan County, 29°16'51"N, 102°37'48"E, elevation 1,689 m, on dead branches of Zanthoxylum bungeanum (Rutaceae), 30th October 2021, W.L Li, 504 (HKAS 125893, holotype), ex-type living culture UESTCC 22.0082 =
Three strains of Dothiorella zanthoxyli isolated from Zanthoxylum bungeanum correspond well with sexual morph of Dothiorella described by
Fusicoccum parvum Pennycook & Samuels, Mycotaxon 24: 455. 1985. Basionym.
= Botryosphaeria parva Pennycook & Samuels, Mycotaxon 24: 455. 1985.
Saprobic on decaying branches of Idesia polycarpa. Sexual morph: Ascomata 284–321 × 129–223 μm (x̄ = 302.5 × 176 μm, n = 10), pseudothecial, forming a botryose aggregation of up to 30, solitary or gregarious, stromatic, immersed, partially erumpent when mature, dark brown to black, more or less circular, multiloculate, individual locules 143.5–161 μm diam, thick-walled. Peridium 59–78 μm diam., composed of several layers of thick-walled, pale brown cells of textura angularis. Ostiole 43.5–58 μm wide, circular, central, papillate. Asci 95–99 × 20–21.5 μm (x̄ = 97 × 20.5 μm, n = 30), (6–)8‐spored, bitunicate, fissitunicate, cylindrical to clavate, apex rounded with an ocular chamber, sometimes short pedicellate. Ascospores 18.5–23 × 7–10.5 μm (x̄ = 20.5 × 9 μm, n = 30), L/W ratio = 3, fusoid to ovoid, with tapered ends and appearing spindle-shape, hyaline, aseptate, externally smooth, internally finely verruculose, biseriate in ascus. Asexual morph: Not observed.
Ascospores germinate on PDA within 12 h. Colonies growing on PDA, reaching a diam., of 7 cm after five days at 25 °C, effuse, velvety, with entire to slightly undulate edge. Surface initially white and later turning dark olivaceous from the surrounding of the colony and dark gray in reverse.
China, Sichuan Province, Leshan City, Jingyan County, 29°30'27"N, 103°57'14"E, elevation 682 m, on dead branches of Idesia polycarpa, 23th July 2021, W.L Li, STZ 327 (HUEST 22.0095), living culture UESTCC 22.0094; ibid., STZ 359 (HUEST 22.0094), living culture UESTCC 22.0093; ibid., Leshan City, Shizhong Distinct, 29°42'13"N, 103°52'25"E, elevation 356 m, on dead branches of Paeonia suffruticosa, 23th July 2021, W.L Li, YMD 366 (HUEST 22.0096), living culture UESTCC 22.0095; ibid., Guangyuan City, Qingchuan County, 32°40'38"N, 105°28'57"E, elevation 638 m, on dead branches of Vernicia fordii, 20th April 2021, W.L. Li, YT 175 (HUEST 22.0097), living culture UESTCC 22.0096.
The morphology of our collections obtained from decaying woody oil plants are similar to the original description of Neofusicoccum parvum (
Saprobic on decaying branches of Pistacia chinensis. Sexual morph: Not observed. Asexual morph: Conidiomata 223–232 × 150–176 μm (x̄ = 227.5 × 163 μm, n = 10), dark brown to black, globose, submerged in the substrate, partially erumpent at maturity, ostiolate. Ostiole 28.5–45 μm diam., circular, central. Peridium 21–30 μm thick, composed of dark brown thick-walled cells of textura angularis, becoming thin-walled and hyaline towards the inner region. Conidiophores reduced to conidiogenous cells. Conidiogenous cells 6–9.5 × 3.5–5 μm (x̄ = 7.5 × 4 μm, n = 20), hyaline, short obpyriform to subcylindrical, holoblastic, indeterminate. Conidia 20.5–24 × 11.5–14 μm (x̄ = 22 × 13 μm, n = 30), L/W ratio = 1.6, ellipsoid to ovoid with both ends rounded, hyaline, aseptate, externally smooth, internally finely verruculose.
Conidia germinate on PDA within 12 h. Colonies growing on PDA, reaching a diameter of 7 cm after five days at 25 °C, effuse, velvety, with entire to slightly undulate edge. Surface initially white and later turning dark olivaceous from the surrounding of the colony and dark gray in reverse.
China, Sichuan Province, Chengdu City, Pidu District, 29°16'50.70"N, 102°37'47.53"E, elevation 442 m, on dead branches of Pistacia chinensis, 19th March 2021, W.L Li, 047 (HUEST 22.0101), living culture UESTCC 22.0100; ibid., 070 (HUEST 22.0102), living culture UESTCC 22.0101; ibid., 071 (HUEST 22.0100), living culture UESTCC 22.0099; ibid., 150 (HUEST 22.0098), living culture UESTCC 22.0097; ibid., 151 (HUEST 22.0099), living culture UESTCC 22.0098; ibid., A39 (HUEST 22.0103), living culture UESTCC 22.0102; ibid., A40 (HUEST 22.0104), living culture UESTCC 22.0103. Additional sequences: LSU: OQ164842 (UESTCC 22.0100), OQ164843 (UESTCC 22.0101), OQ164844 (UESTCC 22.0099), OQ164845 (UESTCC 22.0097), OQ164846 (UESTCC 22.0098), OQ164847 (UESTCC 22.0102).
Seven isolates of our collection are morphologically similar to the original description of Sardiniella guizhouensis (
Saprobic on decaying branches of Camellia oleifera. Sexual morph: Ascomata 219–252 × 216–241 μm (x̄ = 235.5 × 228.5 μm, n = 10), brown to black, solitary or aggregated, immersed, becoming erumpent, ostiolate. Ostiole 71–92 μm, central, relatively broad. Peridium 37.5–45 μm diam., composed of several layers of dark brown cells of textura angularis. Pseudoparaphyses 1.5–2 μm wide, hyaline, smooth, septate. Asci 93.5–107 × 28.5–33 μm (x̄ = 100 × 30.5 μm, n = 30), bitunicate, 8-spored, stipitate, thick-walled, with well-developed apical chamber. Ascospores 29–35 × 13–15 μm (x̄ = 32 × 14 μm, n = 30), L/W ratio = 2.3, yellowish brown to dark brown, ellipsoid to ovoid with both ends rounded, with an apiculus at either end, aseptate, externally smooth, internally finely verruculose, widest in middle to upper third. Asexual morph: Not observed.
Ascospores germinate on PDA within 12 h. Colonies growing on PDA, reaching a diam. of 7 cm after five days at 25 °C, effuse, velvety, with entire to slightly undulate edge. Surface initially white and later turning dark olivaceous from the surrounding of the colony and dark gray in reverse.
China, Sichuan Province, Chengdu City, Pidu District, 31°54'10"N, 104°55'57"E, 656 m, on dead branches of Camellia oleifera, 10th June 2021, W.L Li, 285 (HUEST 22.0107), living culture UESTCC 22.0106; ibid., on dead branches of Acer truncatum, 30°19'57"N, 103°59'47"E, elevation 442 m, 19th March 2021, W.L Li, A33 (HUEST 22.0106), living culture UESTCC 22.0105. Additional sequence: LSU: OQ164848 (UESTCC 22.0105).
The phylogenetic tree shows that two isolates of Sphaeropsis from our collection clustered together with the ex-type strain of Sp. citrigena (ICMP 16812) with high bootstrap support (ML/BI 100%/1). Sphaeropsis citrigena was first described as Phaeobotryosphaeria citrigena by
Saprobic on decayed branched of Camellia oleifera. Sexual morph: Ascostromata 166–198 × 146.5–175 μm (x̄ = 182 × 160.5 μm, n = 20), initially immersed under host epidermis, becoming semi‐immersed to erumpent, solitary or gregarious, uniloculate, black, globose to subglobose, membraneous, ostiolate. Ostiole 75–80 μm wide, central, papillate, pale brown, relatively broad, periphysate. Peridium 23–27 μm wide, comprising 3–5 layers of relatively thick‐walled, dark brown to black‐walled cells arranged in a textura angularis. Pseudoparaphyses 2–2.5 μm diam., hyphae‐like, numerous, embedded in a gelatinous matrix. Asci 87.5–135 × 28.5–35 μm (x̄ = 111 × 32 μm, n = 20), 8‐spored, bitunicate, fissitunicate, cylindrical to clavate, sometimes short pedicellate, mostly long pedicellate, apex rounded with an ocular chamber. Ascospores 28.5–33 × 13–15 μm (x̄ = 30.5 × 14 μm, n = 20), overlapping uniseriate to biseriate, ellipsoidal to obovoid, pale brown to dark brown, septate, slightly wide at the center, minutely guttulate, smooth‐walled. Asexual morph: Not observed.
Ascopores germinate on PDA within 12 h. Colonies growing on PDA, reaching a diam. of 7 cm after five days at 25 °C, effuse, velvety, with entire to slightly undulate edge. Surface initially white and later turning dark olivaceous from the surrounding of the colony and dark gray in reverse.
China, Sichuan Province, Chengdu City, Pidu District, on dead branches of Pistacia chinensis, 30°19'57"N, 103°59'47"E, elevation 442 m, 24th March 2021, W.L Li, 290 (HUEST 22.0105), living culture UESTCC 22.0104.
Sphaeropsis guizhouensis was introduced by
Based on the phylogenetic and morphological analyses, 50 Botryosphaeriales isolates collected from the five regions (Chengdu, Guangyuan, Leshan, Mianyang and Yaan City) in Sichuan Province were identified as 16 species. Of these, Botryosphaeria dothidea was the most prevalent species (20%), followed by Sphaeropsis guizhouensis (14%) and Diplodia mutila (12%) (Fig.
In this study, 48 Botryosphaeriaceae isolates and two Aplosporellaceae isolates were obtained from woody oil plants in Sichuan Province, China, and they were identified as 16 species based on morphological characters and multi-gene phylogenetic analyses. These species included Aplosporella prunicola, A. ginkgonis, Barriopsis tectonae, Botryosphaeria dothidea, Bo. fabicerciana, Diplodia acerigena, Di. mutila, Di. pistaciicola, Di. seriata, Dothiorella camelliae, Do. sarmentorum, Do. zanthoxyli, Neofusicoccum parvum, Sardiniella guizhouensis, Sphaeropsis citrigena and Sp. guizhouensis. Of these, Di. acerigena, Di. pistaciicola, Do. camelliae and Do. zanthoxyli are introduced as novel species. Descriptions, illustrations and notes were provided for 13 species, and only sequences data were provided for the remaining three species viz. Barriopsis tectonae, Botryosphaeria dothidea and Bo. fabicerciana due to low specimen quality.
According to previous studies, Barriopsis tectonae, Sardiniella guizhouensis, Sphaeropsis citrigena and Sp. guizhouensis have limited geographical distribution. So far, Barriopsis tectonae has been reported from China, Thailand and South Africa (
The remaining Botryosphaeriaceae species identified in this study are all well-known and reported from various geographic regions. Botryosphaeria dothidea, Di. seriata and Ne. parvum are recognized to be globally distributed while Di. mutila and Do. sarmentorum are founded only in the temperate and Mediterranean areas. In addition, these species have a broad host range.
Aplosporella (Aplosporellaceae) was introduced by
Though there are more than 1,000 Diplodia epithets listed in Index fungorum (www. Index Fungorum. Accessed in November 2022), presently only 30 species are accepted in this genus based on phylogenetic analyses (
Dothiorella was established by Saccardo with Do. pyrenophora as the type species (
Multiple molecular systematic studies, mainly of pathogenic fungi of woody plants (
Wen-Li Li thanks Tian Zhang for her help with sample collections and Yan-Peng Chen for the fungal diversity analysis.
This study was supported by the Joint Fund of the National Natural Science Foundation of China and the Karst Science Research Center of Guizhou province (Grant No. U1812401).
Taxa and GenBank accession numbers of sequences used in this study
Data type: table (excel document)