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Research Article
Diversity of Cladosporium (Cladosporiales, Cladosporiaceae) species in marine environments and report on five new species
expand article infoWonjun Lee, Ji Seon Kim, Chang Wan Seo, Jun Won Lee, Sung Hyun Kim, Yoonhee Cho, Young Woon Lim
‡ Seoul National University, Seoul, Republic of Korea
Open Access

Abstract

Cladosporium species are cosmopolitan fungi, characterized by olivaceous or dark colonies with coronate conidiogenous loci and conidial hila with a central convex dome surrounded by a raised periclinal rim. Cladosporium species have also been discovered in marine environments. Although many studies have been performed on the application of marine originated Cladosporium species, taxonomic studies on these species are scarce. We isolated Cladosporium species from three under-studied habitats (sediment, seawater, and seaweed) in two districts including an intertidal zone in the Republic of Korea and the open sea in the Western Pacific Ocean. Based on multigenetic marker analyses (for the internal transcribed spacer, actin, and translation elongation factor 1), we identified fourteen species, of which five were found to represent new species. These five species were C. lagenariiforme sp. nov., C. maltirimosum sp. nov., C. marinum sp. nov. in the C. cladosporioides species complex, C. snafimbriatum sp. nov. in the C. herbarum species complex, and C. marinisedimentum sp. nov. in the C. sphaerospermum species complex. Morphological characteristics of the new species and aspects of differences with the already known species are described herein together with molecular data.

Key words

deep sea, Dothideomycetes, intertidal zone, marine fungi, open sea, Republic of Korea, taxonomy, Western Pacific

Introduction

Cladosporium Link is a cosmopolitan genus in the order Cladosporiales of Dothideomycetes (Abdollahzadeh et al. 2020). It is characterized by coronate conidiogenous loci and, conidial hila formed by a central convex dome surrounded by a raised periclinal rim (David 1997). With these characteristics, sequence-based identification and classification have been officially proposed as standardized methods (Seifert 2009; Hibbett et al. 2016). Although the internal transcribed spacer (ITS) region has been selected as the primary fungal barcode marker (Schoch et al. 2012), it has low resolution for Cladosporium (Schubert et al. 2007). Therefore, for species-level identification of Cladosporium, actin (act) and translation elongation factor 1 (tef1) genes have been proposed (Schubert et al. 2007; Bensch et al. 2012). Currently, Cladosporium sensu stricto (s. str.), the type species of which is C. herbarum (Pers.) Link, comprises three species complexes, namely Cladosporium cladosporioides, Cladosporium herbarum, and Cladosporium sphaerospermum species complexes (Schubert et al. 2007; Zalar et al. 2007; Bensch et al. 2010). More than 230 species have been identified (Iturrieta-González et al. 2021), and new species have continuously been proposed based on morphological features and molecular sequence data (Iturrieta-González et al. 2021; Pereira et al. 2022).

Members of Cladosporium are commonly found in terrestrial environments, such as caves (Pereira et al. 2022), indoors (Bensch et al. 2018), and soil (Iturrieta-González et al. 2021). They occupy various ecological niches as saprotrophs (Iturrieta-González et al. 2021), endophytes (Hamayun et al. 2009), phytopathogens (Marin-Felix et al. 2017), animal pathogens (Sandoval-Denis et al. 2015), and hyperparasites (Anderson et al. 2016). Cladosporium has also been reported in marine environments, such as seawater (Zambelli et al. 2015), sediment (Luo et al. 2020; Marchese et al. 2021), and marine organisms (Godinho et al. 2019; Marchese et al. 2021). Several Cladosporium species with halotolerant and osmotolerant characteristics have adapted to marine environments (Zalar et al. 2007; Biango-Daniels and Hodge 2018; Araújo et al. 2020). Marine Cladosporium species produce diverse secondary metabolites (Salvatore et al. 2021). Metabolites are being actively studied for potential application in the bioremediation of pollutants, such as polycyclic aromatic hydrocarbons (Birolli et al. 2018) and polyester polyurethane (Zhang et al. 2022). However, such research is conducted on a limited number of species because Cladosporium has been poorly investigated in marine environments. Active taxonomic studies on marine Cladosporium species are necessary to understand the true diversity of marine Cladosporium and to discover valuable metabolites.

As part of exploring marine fungi for the Marine Fungal Resource Bank, we have been continuously isolating marine fungi. In this study, Cladosporium strains isolated from various marine habitats were tentatively identified based on morphological characteristics and ITS sequence analysis. The present study was aimed at (1) identifying Cladosporium strains at the species level using multigenetic marker analyses (ITS, act, and tef1) and (2) examining the niche specificity of Cladosporium species by district and habitat. Fourteen Cladosporium species were identified, of which five were confirmed as novel species – three in the C. cladosporioides species complex, and one each in the C. herbarum and C. sphaerospermum species complexes. A detailed morphological description of the new species along with genetic marker sequences, is presented, herein.

Materials and methods

Sampling and isolation

Sampling was performed in two separate districts – an intertidal zone of the Republic of Korea and the open sea in the Western Pacific (Table 1). From the intertidal zone of the Republic of Korea, sediments (sea sand and mudflat) were sampled from six sites in 2016–2021, and seaweeds were sampled in two regions in 2021 (Table 1). From the Western Pacific, the top layer of the deep-sea sediment was sampled using two Giant Piston Corers (GPC) and a Multiple Corer. Seawater was sampled in 2021 from three different regions at three depths – the surface layer, the oxygen minimum zone, and the subsurface chlorophyll maximum layer – using Niskin bottles equipped in the conductivity, temperature, and depth (CTD) rosettes (Table 1).

Table 1.

Information on the sampling sites.

Region Habitat District GPS coordinates
CJ (ChuJa-do) Seaweed Republic of Korea 33°58′14″N ~ 33°55′46″N, 126°16′55″W ~ 126°20′31″W
GH (GangHwa) Sediment (Sea sand) Republic of Korea 37°35′18″N, 126°26′33″W
Sediment (Mudflat) Republic of Korea 37°36′36″N, 126°31′13″W
GS (GoSeong) Sediment (Sea sand) Republic of Korea 38°28′39″N, 128°26′22″W
JJ (JeJu-do) Seaweed Republic of Korea 33°23′53″N, 126°14′24″W
Sediment (Sea sand) Republic of Korea 33°14′21″N, 126°20′02″W
MA (MuAn) Sediment (Mudflat) Republic of Korea 35°01′40″N, 126°25′11″W
Sediment (Sea sand) Republic of Korea 35°03′44″N, 126°20′13″W
SC (SunCheon) Sediment (Mudflat) Republic of Korea 34°50′48″N, 127°29′33″W
Sediment (Sea sand) Republic of Korea 34°50′29″N, 127°29′09″W
US (UlSan) Sediment (Sea sand) Republic of Korea 35°23′00″N, 129°20′46″W
C1 (CTD1) Sea water Western Pacific 17°19′00″N, 149°51′18″W
C2 (CTD2) Sea water Western Pacific 16°01′39″N, 151°49′19″W
C3 (CTD3) Sea water Western Pacific 19°31′18″N, 151°27′19″W
G1 (GPC1) Sediment (5730 m) Western Pacific 15°22′42″N, 151°40′50″W
G2 (GPC2) Sediment (5730 m) Western Pacific 20°45′57″N, 152°35′32″W
MC (Multiple corer) Sediment (5814 m) Western Pacific 16°06′15″N, 152°25′00″W

Seawater samples in Niskin bottles were filtered immediately through a sterile polycarbonate track-etched (PCTE) membrane filter (d = 47 mm, ϕ = 0.2 μm, GVS Filter Technology, Sanford, USA) using a vacuum pump. The filters were then placed on dichloran rose bengal chloramphenicol (DRBC; Difco) agar, supplemented with sterilized seawater (SSW), to isolate fungi. Seaweed samples were cut into 0.5 × 0.5 cm2 pieces and placed on DRBC agar. For the sediment samples, 5 g of each sample was first diluted with 45 mL of SSW in a 50 mL falcon tube, and 5 mL of the mixture was further diluted with 45 mL of SSW. Approximately 150 μL of the dilution was spread on potato dextrose agar (PDA; Difco), DRBC agar, and glucose yeast extract agar (GYA; 1 g glucose, 0.1 g yeast extract, 0.5 g peptone, and 15 g/L). Sabouraud dextrose agar (SDA; Difco) medium was used for the diluted samples from the intertidal zone and open sea. Whenever colonies grew on a medium, each single colony was transferred onto PDA supplemented with SSW to obtain a pure culture. Fungal isolates were stored in 20% glycerol with SSW at −80 °C and deposited in the Seoul National University Fungus Collection (SFC), Seoul, Republic of Korea.

DNA extraction,PCR amplification, and sequencing

The fungal mycelium mats of each isolate grown on PDA were ground using a Bead Ruptor Elite Homogenizer (OMNI International, Kennesaw, GA, USA). Genomic DNA was extracted using an AccuPrep Genomic DNA Extraction Kit (Bioneer Co., Daejeon, Korea), following a modified manufacturer’s protocol, in which CTAB Extraction Solution (Biosesang, Korea) was used instead of the TL buffer in the kit.

The ITS region and partial regions of two protein-coding genes, act and tef1, were amplified using polymerase chain reaction (PCR). Each region was amplified using the following primer sets: ITS1F (Gardes and Bruns 1993) / ITS4 (White et al. 1990) for the ITS region, ACT-512F/ACT-783R (Carbone and Kohn 1999) for act, and EF1-728F/EF1-986R (Carbone and Kohn 1999) or EF1-728F/EF2 (O’Donnell et al. 1998; Carbone and Kohn 1999) for tef1. PCR was performed using a Maxime PCR premix (iNtRON Biotechnology, Inc., Korea) or an AccuPower PCR premix (Bioneer Co., Korea) on a C1000 Touch Thermal Cycler (Bio-Rad) or a Mastercycler Nexus Gradient (Eppendorf) under the following conditions: initial denaturation at 95 °C for 5 min, 35 cycles of denaturation at 95 °C for 40 s, annealing at 55 °C for 40 s, and extension at 72 °C for 60 s, followed by a final extension at 72 °C for 5 min. The amplicons were validated using gel electrophoresis on a 1% agarose gel. The PCR products were purified using a PCR Purification Kit (GeneAll Biotechnology, Seoul, South Korea) or an ExoSAP-IT Express PCR Product Cleanup (Thermo Fisher Scientific), following the manufacturer’s instructions.

Sanger sequencing was performed in both forward and reverse directions using an ABI Prism 3730xl Genetic Analyzer (Life Technologies, Gaithersburg, MD, USA) by Macrogen (Seoul, Republic of Korea). The generated sequences were proofread and merged using the “De novo assemble” function in the Geneious Prime software ver. 2022. 0. 2. (Biomatters Ltd., San Diego, CA, USA). All the assembled sequences were deposited in GenBank (Suppl. material 1: table S1).

Phylogenetic analyses

Reference sequences of the genus Cladosporium were retrieved from GenBank (Suppl. material 1: table S2). Cercospora beticola (CBS 116456) was used as an outgroup. Sequences were aligned individually for each region using MAFFT v7.450 (Katoh et al. 2019), and manually trimmed at the end. The alignments for ITS, act, and tef1 were then concatenated for downstream phylogenetic analyses. For phylogenetic analyses, ModelTest-NG (Darriba et al. 2020) was used for model selection of each partition. The selected model for ITS was TrNef+I+G4 and that for act and tef1 was TPM2uf+I+G4. As both the models were unsupported in MrBayes, each was replaced with SYM+I+G and GTR+I+G, respectively, according to Dellicour et al. (2014). Maximum likelihood (ML) and Bayesian inference (BI) analyses were performed to generate the phylogenetic trees. The ML tree was inferred using RAxML (Stamatakis 2014) with 1,000 replications and the GTR+G+I model was used after finding the model test in MEGA 7 (Kumar et al. 2016). MrBayes (Ronquist et al. 2011) was used for the BI analysis. BI trees were sampled every 1000th from 10,000,000 generations with four Markov chains. ModelTest-NG and MrBayes were performed on the CIPRES gateway supplied by XSEDE (Miller et al. 2012). The ML phylogenetic tree was selected for data visualization. Posterior probability (PP) values are represented on the ML phylogenetic tree.

Morphological observations

Morphological observations of the new species were performed as described by Schubert et al. (2007). The new species were cultured on PDA, malt extract agar (MEA; Oxoid), oatmeal agar (OA; Difco), and synthetic nutrient-poor agar (SNA; KH2PO4 1 g, KNO3 1 g, MgSO47H2O 5 g, KCl 0.5 g, glucose 0.2 g, saccharose 0.2 g, and Bacto agar 20 g/L) for 14 d at 25 °C in the dark for description of cultural characteristics. The diameters of the colonies were measured using ImageJ (Schneider et al. 2012). The color of the surface and reverse side of the colonies was described using the Methuen Handbook of Colour (Kornerup and Wanscher 1978). For observing microscopic features, such as conidial structures, the representative strains were cultured on SNA at 25 °C in the dark from 7 d to 14 d. Observations were made using a Nikon 80i compound light microscope (Nikon, Tokyo, Japan), and at least 30 measurements were collected per strain using ImageJ (Schneider et al. 2012) at 400× magnification.

Results

A total of 88 fungal strains isolated from marine environments were initially identified based on ITS sequences and morphological characteristics as members of the genus Cladosporium. A total of 77 strains were from the intertidal zones in the Republic of Korea and 11 were from the open sea in the Western Pacific. For identification at species level, concatenated phylogenetic analysis was carried out using ITS, act, and tef1 sequences. Sequences from 55 of the 88 strains were analyzed together with sequences from 168 reference strains. For phylogenetic analyses, 666 sequences were used – 165 sequences (ITS: 55, act: 55, tef1: 55) that were newly generated in this study and 501 reference sequences (ITS: 168, act: 166, tef1: 167). The final combined alignment comprised 1,205 characters, including gaps, of which ITS, act, and tef1 contained 507, 250, and 448, respectively. In the alignment data, 450 conserved (ITS: 332, act: 79, tef1: 49), 602 variable (ITS: 158, act: 155, tef1: 289), and 449 informative (ITS: 79, act: 128, tef1: 242) characters were included.

The analyzed Cladosporium strains belonged to fourteen monophyletic subclades. Nine clades were respectively matched with C. allicinum, C. halotolerans, C. perangustum, C. proteacearum, C. rectoides, C. tenuissimum, C. velox, C. xanthochromaticum, and C. xylophilum described previously (Zalar et al. 2007; Bensch et al. 2010, 2012; Sandoval-Denis et al. 2016; Prasannath et al. 2021), supported by ≥ 93% bootstrap and ≥ 0.96 PP values. The other five taxa were not grouped with any reference sequences and established each distinct clade with ≥ 99% bootstrap and 1.00 PP values (Fig. 1). Therefore, we propose them as new Cladosporium species based on their morphological characteristics. Three taxa belong to the C. cladosporioides species complex, one to the C. herbarum species complex, and one to the C. sphaerospermum species complex.

Figure 1. 

Maximum likelihood (ML) tree of Cladosporium, inferred based on ITS, act, and tef1 sequences. The values at each node indicate the bootstrap of ML (≥ 70) and the posterior probability (PP; ≥ 0.90) of Bayesian inference (BI) analyses. Thick lines on branches indicate 100 bootstrap and 1.00 PP support. The tree is rooted to Cercospora beticola (CBS 116456). The small tree on the upper left represents the topology of species complexes of the genus. The filled triangles correspond to the species complex(es) shown. The colored circles symbolize habitats where the species were isolated. Previously described species are grouped in gray boxes, and blue boxes indicate new species. Strains with newly generated sequences are in red, with the holotypes in bold. The holotype and epitype for the reference strains are represented with “*” and “**”, respectively.

Taxonomy

Cladosporium lagenariiforme Wonjun Lee & Y.W. Lim, sp. nov.

MycoBank No: 847096
Figs 2A, 3A

Typification

Republic of Korea. Jeju-do, Chuja-myeon, 33°57′11.88″N, 126°18′07.56″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (holotype SFC20230103-M23, stored in a metabolically inactive state).

Figure 2. 

Morphological characteristics of the new and unrecorded species on PDA, MEA, OA, and SNA media A Cladosporium lagenariiforme sp. nov. B Cladosporium maltirimosum sp. nov. C Cladosporium marinisedimentum sp. nov. D Cladosporium marinum sp. nov. E Cladosporium proteacearum F Cladosporium snafimbriatum sp. nov. “F” and “R” represent the front and the reverse sides of the culture plate, respectively. PDA: potato dextrose agar; MEA: malt extract agar; OA: oatmeal agar; SNA: synthetic nutrient-poor agar.

Etymology

The term ‘lagenariiforme’ was derived from the generic name of a calabash (Lagenaria) to describe the shape of the ramoconidia and secondary ramoconidia.

Figure 3. 

Morphological characteristics of conidial structures on SNA A Cladosporium lagenariiforme sp. nov. B Cladosporium maltirimosum sp. nov. C Cladosporium marinisedimentum sp. nov. D Cladosporium marinum sp. nov. E Cladosporium proteacearum F Cladosporium snafimbriatum sp. nov. Scale bars: 10 μm (A–F).

Description

Asexual morphology: Mycelium mainly immersed, composed of septate, branched, hyaline, verruculose hyphae, 1.8–4.3 μm wide. Conidiophores macronematous and micronematous, arising laterally from hyphae, sometimes reduced to conidiogenous cells, septate, erect to slightly flexuous, slightly nodulose, branched, up to 208 μm long, 1.7–3 μm wide, pale brown, verrucose. Conidiogenous cells integrated, terminal and intercalary, cylindrical to subcylindrical, 15.1–37.6 × 1.4–2.9 μm, bearing up to four slightly darkened and refractive conidiogenous loci. Ramoconidia 0(–2)-septate, subcylindrical to ellipsoidal, obclavate, sometimes calabash-like constricted at the center, 8.7–26.4 × 1.9–3.5 μm [av. (± SD) 15.2 (± 5.46) × 2.6 (± 0.39)], pale brown, verruculose. Conidia forming branched chains, with up to six conidia in the terminal unbranched part, long neck between conidia, aseptate, pale brown, smooth to verruculose, with protuberant, slightly darkened, and refractive hila. Small terminal conidia aseptate, ellipsoidal, 2.1–3.5 × 1.3–2.3 μm [av. (± SD) 3 (± 0.32) × 1.9 (± 0.22)]. Intercalary conidia aseptate, ellipsoidal to limoniform, 2.9–5.3 × 1.6–2.7 μm [av. (± SD) 4.0 (± 0.47) × 2.0 (± 0.25)]. Secondary ramoconidia 0(−1)-septate, subcylindrical to ellipsoidal, obclavate, sometimes calabash-like constricted at the center, 7.3–21.6 μm long × 2.0–3.7 μm [av. (± SD) 13.6 (± 4.01) × 2.6 (± 0.36)].

Cultural characters : Colonies on PDA 52–70 mm diam after 14 d at 25 °C, greenish gray (1B2) to olive (1E3), reverse dark gray (1F8), floccose, velvety, crateriform, radially furrowed, wrinkled, usually significantly wrinkled in the margin part; margin yellowish gray (4B2) edge, slightly lobate; aerial mycelia abundantly formed, dense, with few exudates, sporulation profuse. Colonies on MEA 46–74 mm diam after 14 d at 25 °C, gray (1C1) to olive gray (1D3), reverse dark gray (1F8), floccose-woolly, umbonate, (frequently) radially furrowed, wrinkled, sometimes significantly wrinkled in the margin part; margin whitish edge, slightly lobate, rarely undulate; aerial mycelia abundantly formed, dense, with prominent exudates, sporulation profuse. Colonies on OA 56–68 mm diam after 14 d at 25 °C, olive yellow (3C8), reverse concolorous, woolly-floccose, raised, radially furrowed; margin yellowish gray (3C2), regular; aerial mycelia abundantly formed, without prominent exudates, sporulation moderate. Colonies on SNA 36–37 mm diam after 14 d at 25 °C, olive yellow (3E8) to olive (3E8), reverse concolorous, powdery, flat; margin yellowish white (2A2), regular; aerial mycelia abundantly formed, without prominent exudates, sporulation profuse.

Habitat and distribution

Isolated from seaweeds; Southern Korean seaside in Republic of Korea.

Additional cultures examined

Republic of Korea. Jeju-do, Chuja-myeon, 33°23′53″N, 126°14′24″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M20, stored in a metabolically inactive state); Jeju-do, Chuja-myeon, 33°23′53″N, 126°14′24″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M21, stored in a metabolically inactive state); Jeju-do, Chuja-myeon, 33°23′53″N, 126°14′24″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M22, stored in a metabolically inactive state).

Notes

Cladosporium lagenariiforme sp. nov. is phylogenetically closely related to C. angulosum and C. xanthochromaticum (Fig. 1). Genetic identity between C. lagenariiforme and C. angulosum (CBS 140692), the closest species, shows 93.12% in act and 87.62% in tef1. Cladosporium lagenariiforme and C. angulosum produce up to 6 and 14 conidia in long-branched chains, respectively, which is more than that in C. xanthochromaticum [up to 6(–7)] isolated from indoor environments (Bensch et al. 2018). The conidiophores of C. lagenariiforme are verrucose, and ramoconidia rarely have up to two septa, compared to that of the two sister species with smooth conidiophores and often aseptate ramoconidia (Sandoval-Denis et al. 2016). The ramoconidia of C. lagenariiforme are shorter than those of C. angulosum and C. xanthochromaticum (24.5–46 × 2–3.5 μm and 18–36 × 2–3.5 μm, respectively) (Sandoval-Denis et al. 2016).

Cladosporium maltirimosum Wonjun Lee & Y.W. Lim, sp. nov.

MycoBank No: 847099
Figs 2B, 3B

Typification

Republic of Korea. Jeollanam-do, Muan-gun, 35°03′44″N, 126°20′13″E, sea sand, Jul 2021, M.S. Park & Y.W. Lim (holotype SFC20230103-M51, stored in a metabolically inactive state).

Etymology

The epithet ‘maltirimosum’ refers to the cracked colony that appears on the MEA medium derived from Latin rimosus (cracked).

Description

Asexual morphology: Mycelium immersed, composed of septate, branched, hyaline to subhyaline, verruculose hyphae, nodulose, 2–5.5 μm wide. Conidiophores macronematous and micronematous, arising laterally from hyphae, septate, erect to slightly flexuous, non-nodulose, unbranched, up to 278 μm long, 1.9–4.3 μm wide, pale brown, verruculose. Conidiogenous cells integrated, terminal and intercalary, cylindrical to subcylindrical, 16–45.7 × 2.7– 4.1 μm, bearing up to three protuberant, slightly darkened, and refractive conidiogenous loci. Ramoconidia 0(−1)-septate, subcylindrical to ellipsoidal, 8.4–23 × 2.2–5.2 μm [av. (± SD)15.3 (± 4.5) × 3.6 (± 0.77)], pale brown, verruculose. Conidia solitary or forming branched chains, with up to seven conidia in the terminal unbranched part, aseptate, pale green, smooth to verruculose, with protuberant, slightly darkened, and refractive hila. Small terminal conidia aseptate, ellipsoidal, 4.2–6.7 × 2.2–3.3 μm [av. (± SD) 5.4 (± 0.61) × 2.8 (± 0.29)]. Intercalary conidia aseptate, ellipsoidal to limoniform, rarely fusiform, 4.6–6.7 × 1.8–3.5 μm [av. (± SD) 5.5 (± 0.5) × 2.7 (± 0.35)]. Secondary ramoconidia 0(−1)-septate, subcylindrical to ellipsoidal, 8.9–22.5 × 2.7–5.6 μm [av. (± SD) 15.6 (± 3.34) × 3.6 (± 0.67)].

Cultural characters : Colonies on PDA 44–63 mm diam after 14 d at 25 °C, olive yellow (2D8) to olive (3E8), reverse dark gray (1F1), powdery, floccose, sometimes slightly fluffy, radially furrowed, wrinkled; margin white edge, slightly undulated or lobate, sometimes regular; aerial mycelia formed, moderate, without prominent exudates, sporulation profuse. Colonies on MEA 34–36 mm diam after 14 d at 25 °C, gray (1B1 to 1E1), reverse concolorous to dark gray (1F1), slightly crateriform due to cracked medium, floccose, woolly, radially furrowed, wrinkled; margin white, undulate; aerial mycelia abundantly formed, without prominent exudates, sporulation profuse. Colonies on OA 52–63 mm diam after 14 d at 25 °C, grayish green (1D3) to olive (1E5), reverse concolorous, powdery, floccose, fluffy, sometimes woolly, radially furrowed, wrinkled, flat; margin yellowish white (1A2), regular; aerial mycelia formed in spots, sometimes without prominent exudates, sporulation profuse. Colonies on SNA 37–39 mm diam after 14 d at 25 °C, grayish green (1D4) to olive (1E4), reverse concolorous to olive (3F8), powdery, flat; margin whitish, undulate; aerial mycelia absent, without prominent exudates, sporulation profuse.

Habitat and distribution

Isolated from mudflats, sea sands, and seaweeds; Eastern, Southern, and Western Korean seaside in Republic of Korea.

Additional cultures examined

Republic of Korea, Jeju-do, Hallim-eup, 33°23′53″N, 126°14′24″E, seaweed, Jul 2021, M.S. Park & Y.W. Lim (SFC20230103-M41, stored in a metabolically inactive state); Jeju-do, Chuja-myeon, 33°57′10″N, 126°20′18″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M42, stored in a metabolically inactive state); Jeju-do, Chuja-myeon, 33°57′11.88″N, 126°18′07.56″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M43, stored in a metabolically inactive state); Jeju-do, Hallim-eup, 33°23′53″N, 126°14′24″E, seaweed, 15 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M44, stored in a metabolically inactive state); Jeollanam-do, Muan-gun, 35°01′40″N, 126°25′16″E, mudflat, Jan 2020, M.S. Park & Y.W. Lim (SFC20230103-M45, stored in a metabolically inactive state); Gangwon-do, Goseong-gun, 38°28′39″N, 128°26′22″E, Sea sand, 31 Oct 2016, M.S. Park & Y.W. Lim (SFC20170718-M12, stored in a metabolically inactive state); Ulsan, Ulju-gun, 35°23′00″N, 129°20′46″E, sea sand, Apr 2017, M.S. Park & Y.W. Lim (SFC20230103-M47, stored in a metabolically inactive state); Jeollanam-do, Suncheon-si, 34°50′29″N, 127°29′09″E, Sea sand, Jan 2020, M.S. Park & Y.W. Lim (SFC20230103-M48, stored in a metabolically inactive state); Gangwon-do, Goseong-gun, 38°28′39″N, 128°26′22″E, sea sand, Jan 2020, M.S. Park & Y.W. Lim (SFC20230103-M49, stored in a metabolically inactive state); Jeollanam-do, Suncheon-si, 34°50′29″N, 127°29′09″E, sea sand, Jul 2020, M.S. Park & Y.W. Lim (SFC20230103-M50, stored in a metabolically inactive state); Jeollanam-do, Suncheon-si, 34°50′29″N, 127°29′09″E, sea sand, Jul 2021, M.S. Park & Y.W. Lim (SFC20230103-M52, stored in a metabolically inactive state).

Notes

Cladosporium maltirimosum sp. nov. is closely related to C. anthropophilum and C. devikae and formed a well-supported clade (Fig. 1). The colonies of C. maltirimosum grow faster than those of C. anthropophilum associated with human (17–39 mm, 27–32 mm, and 23–26 mm, respectively) on PDA, MEA, and OA (Sandoval-Denis et al. 2016). However, whereas the growth rate of C. maltirimosum on PDA and OA falls within the range of the indoor C. anthropophilum colonies (17–80 mm and 27–74 mm, respectively), the colonies on MEA grow slower than the indoor C. anthropophilum (50–72 mm) (Bensch et al. 2018). Cladosporium maltirimosum has wider hyphae (2–3 μm) and fewer maximum numbers of conidiogenous loci [3–8(–10)] than in C. anthropophilum (Sandoval-Denis et al. 2016). In addition, the ramoconidia of C. maltirimosum are significantly shorter than those of C. anthropophilum (20–42 × 2–5 μm; Sandoval-Denis et al. 2016). Cladosporium maltirimosum produces up to six conidia, whereas C. anthropophilum produces up to four in an unbranched chain (Sandoval-Denis et al. 2016). The colonies of C. maltirimosum grow slower than those of C. devikae (70 mm diam) on PDA (Prasannath et al. 2021). Also, secondary ramoconidia of C. maltirimosum is longer than those of C. devikae (5–11 × 2–4 μm) (Prasannath et al. 2021), but the conidiophores are shorter than those of C. devikae (200–700 μm) (Prasannath et al. 2021). Cladosporium maltirimosum showed a genetic identity of about 96% with C. anthropophilum (CBS 140685) (96.89% in act and 96.585% in tef1) but showed a high level of identity with C. devikae (BRIP 72278a) (100% in act and 97.56% in tef1). Despite having considerable genetic similarities with C. devikae, C. maltirimosum had distinct clades, different from C. devikae, in the phylogenetic tree. Furthermore, the two species can be distinguished by morphological differences such as growth rate on PDA and length of conidiophore and secondary ramoconidia. Aside from that, as C. devikae employs a single strain, there is not much information on the species, and the species’ phylogenetic placement within Cladosporium is unclear. Hence, additional study on C. devikae appears to be required.

Cladosporium marinisedimentum Wonjun Lee & Y.W. Lim, sp. nov.

MycoBank No: 847100
Figs 2C, 3C

Typification

Western Pacific Ocean, 15°22.697'N, 151°40.836'E, depth 5730 m, deep-sea sediment, 23 May 2021, Y.J. Kim, Wonjun Lee & Y.W. Lim (holotype SFC20230103-M28, stored in a metabolically inactive state).

Etymology

The epithet ‘marinisedimentum’, derived from Latin, refers to ‘marine sediment,’ a habitat where the species was isolated.

Description

Asexual morphology: Mycelium immersed, composed of septate, branched, pale brown or subhyaline, verruculose hyphae, 2.6–4.5 μm wide. Conidiophores macronematous and micronematous, arising laterally or terminally from hyphae, sometimes reduced to conidiogenous cells, septate, erect to slightly flexuous, non-nodulose, branched, up to 220 μm long, 1.5–3.7 μm wide, pale brown, smooth to verruculose. Conidiogenous cells integrated, terminal, rarely intercalary, filiform to cylindrical, 16.2–41.5 × 2–3.2 μm, bearing up to three slightly darkened and refractive conidiogenous loci. Ramoconidia 0–1(–3)-septate, subcylindrical to cylindrical, 9.2–31.8 × 1.7–3.3 μm [av. (± SD) 17.4 (± 6.07) × 2.6 (± 0.34)], pale brown, smooth to verruculose. Conidia forming branched chains, with up to four conidia in the terminal unbranched part, aseptate, pale brown, smooth to verruculose, with protuberant, slightly darkened, and refractive hila. Small terminal conidia aseptate, subglobose to ellipsoidal, 2.6–4.6 × 2.1–3.2 μm [av. (± SD) 3.6 (± 0.52) × 2.6 (± 0.23)]. Intercalary conidia 0(−1)-septate, subglobose to ellipsoidal-limoniform, ovoid, 3.2–9.1 × 2.1–3.6 μm [av. (± SD) 4.6 (± 1.25) × 2.8 (± 0.34)]. Secondary ramoconidia 0–1(−2)-septate, subcylindrical to ellipsoidal, 7.8–31.6 × 2.1–3.4 μm [av. (± SD) 13.9 (± 4.88) × 2.7 (± 0.34)].

Cultural characters : Colonies on PDA 37–46 mm diam after 14 d at 25 °C, olive (2E6 to 3E8), reverse dark gray (1F1), velvety, powdery, radially furrowed, wrinkled, umbonate; margin white edge, slightly lobate; aerial mycelia sparsely formed, without prominent exudates, sporulation profuse. Colonies on MEA 36–43 mm diam after 14 d at 25 °C, olive gray (2D2) to olive (2E3), reverse dark gray (1F1), powdery, velvety, undulate, slightly raised, radially furrowed, wrinkled; margin whitish edge, slightly lobate or undulate; aerial mycelia moderately formed, somewhat irregular, without prominent exudates, sporulation profuse. Colonies on OA 33–37 mm diam after 14 d at 25 °C, olive gray (2E2) to olive (2F3), reverse concolorous, powdery, floccose, flat; margin whitish, regular; aerial mycelia abundantly formed in radial form, without prominent exudates, sporulation profuse. Colonies on SNA 19–23 mm diam after 14 d at 25 °C, olive (2F3 to 2F8), reverse concolorous, powdery, flat; margin yellowish white (1A2), regular; aerial mycelia sparsely formed, without prominent exudates, sporulation profuse.

Habitat and distribution

Isolated from deep-sea sediments and sea sands; Eastern and Southern Korean seaside in Republic of Korea and Eastern Mariana trench in Western Pacific Ocean.

Additional cultures examined

Western Pacific Ocean, 16°06′15″N, 152°25′00″E, depth 5814 m, deep-sea sediment, 27 May 2021, Y.J. Kim, Wonjun Lee & Y.W. Lim (MABIK FU00001143, stored in a metabolically inactive state); Republic of Korea. Gangwon-do, Goseong-gun, 38°28′39″N, 128°26′22″E, sea sand, Jul 2021, M.S. Park & Y.W. Lim (SFC20230103-M29, stored in a metabolically inactive state).

Notes

Cladosporium marinisedimentum sp. nov. is phylogenetically related to C. sphaerospermum. The former species has broader hyphae than the latter one (1–3 μm) (Bensch et al. 2018), but the conidiophores of C. marinisedimentum are narrower than that of C. sphaerospermum (2.5–4.5(–6) μm) (Bensch et al. 2018). The number of septa in ramoconidia and secondary ramoconidia in C. marinisedimentum is lower than that in C. sphaerospermum (up to five septa and 0–3(–4)-septate; Bensch et al. 2018). On PDA, C. marinisedimentum does not produce any exudates or pigments, whereas C. sphaerospermum produces prominent exudates and green soluble pigments (Bensch et al. 2018). Furthermore, the two species differ from each other in the identities of act (98.04%) and tef1 (93.23%) genetic markers (CBS 193.54).

Cladosporium marinum Wonjun Lee & Y.W. Lim, sp. nov.

MycoBank No: 847098
Figs 2D, 3D

Typification

Republic of Korea. Jeju-do, Chuja-myeon, 33°23′53″N, 126°14′24″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (holotype SFC20230103-M33, stored in a metabolically inactive state).

Etymology

The name ‘marinum’, derived from Latin, refers to the various marine substrates (seaweed, sea sand, and mudflat) from which the species was isolated.

Description

Asexual morphology: Mycelium superficial and immersed, composed of septate, branched, hyaline to subhyaline, smooth to verruculose hyphae, nodulose, 2–5.7 μm wide. Conidiophores macronematous and micronematous, arising laterally or terminally from hyphae, (sometimes reduced to conidiogenous cells), septate, slightly flexuous, non-nodulose, usually unbranched or branched, up to 243 μm long, 2–4 μm wide, pale brown, verruculose to verrucose. Conidiogenous cells integrated, terminal and intercalary, cylindrical to subcylindrical, 20.5–47.7 × 2–3.6 μm, bearing up to four slightly darkened and refractive conidiogenous loci. Ramoconidia 0–1(–2)-septate, subcylindrical to cylindrical, 10.2–28.171 × 2.4–4.1 μm [av. (± SD) 17.3 (± 2.39) × 2.9 (± 0.37)], pale brown, verruculose. Conidia forming branched chains, with up to five conidia in the terminal unbranched part, long neck area between conidia, aseptate, pale brown, smooth to verruculose, with protuberant, slightly darkened and refractive hila. Small terminal conidia aseptate, obovoidal to ellipsoidal, 2.9–5.3 × 2–3 μm [av. (± SD) 3.8 (± 0.53) × 2.5 (± 0.25)]. Intercalary conidia aseptate, very rarely 1-septate, ellipsoidal to limoniform, obovoid, sometimes subcylindrical, 2.7–6.2 × 1.8–2.8 μm [av. (± SD) 4.2 (± 0.76) × 2.3 (± 0.22)]. Secondary ramoconidia 0–1-septate, subcylindrical to cylindrical, slightly obclavate, 8.5–28.2 × 2.3–3.7 μm [av. (± SD) 14.5 (± 4.38) × 2.9 (± 0.35)].

Cultural characters : Colonies on PDA 37–66 mm diam after 14 d at 25 °C, olive (3E3 to 3F4), reverse dark gray (1F1), floccose-velvety, sometimes woolly, raised, radially furrowed, wrinkled, raised; margin white, slightly hyaline edge, undulated; aerial mycelia abundantly formed, with numerous prominent exudates, sporulation profuse. Colonies on MEA 35–40 mm diam after 14 d at 25 °C, grayish white (1B1) to olive gray (3D2), reverse dark gray (1F1), velvety, raised to crateriform, radially furrowed at the margin region, wrinkled; margin white, regular; aerial mycelia abundantly formed, dense, without prominent exudates, sporulation profuse. Colonies on OA 41–47 mm diam after 14 d at 25 °C, gray (1C1 to 1E1), reverse concolorous, velvety, floccose, raised, radially furrowed; margin yellowish, regular; aerial mycelia abundantly formed, with few exudates, sporulation profuse. Colonies on SNA 37–41 mm diam after 14 d at 25 °C, olive (3D3) to olive yellow (3E8), reverse olive (3D3 to 3F3), slightly fluffy-floccose, powdery, flat; margin yellowish white (2A2), hyaline, undulate; aerial mycelia abundantly moderate, without prominent exudates, sporulation profuse.

Habitat and distribution

Isolated from mudflats, sea sands, and seaweeds; Southern and Western Korean seaside in Republic of Korea.

Additional cultures examined

Republic of Korea. Jeju-do, Chuja-myeon, 33°23′53″N, 126°14′24″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M30, stored in a metabolically inactive state); Jeju-do, Chuja-myeon, 33°23′53″N, 126°14′24″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M31, stored in a metabolically inactive state); Jeju-do, Chuja-myeon, 33°23′53″N, 126°14′24″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M32, stored in a metabolically inactive state); Jeju-do, Chuja-myeon, 33°57′50″N, 126°17′38″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M34, stored in a metabolically inactive state); Jeju-do, Hallim-eup, 33°23′53″N, 126°14′24″E, seaweed, 15 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M35, stored in a metabolically inactive state); Jeju-do, Hallim-eup, 33°23′53″N, 126°14′24″E, seaweed, 15 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M36, stored in a metabolically inactive state); Jeollanam-do, Muan-gun, 35°01′40″N, 126°25′16″E, mudflat, Apr 2017, M.S. Park & Y.W. Lim (SFC20230103-M37, stored in a metabolically inactive state); Jeollanam-do, Muan-gun, 35°03′44″N, 126°20′13″E, sea sand, Oct 2016, M.S. Park & Y.W. Lim (SFC20230103-M38, stored in a metabolically inactive state); Jeollanam-do, Suncheon-si, 34°50′29″N, 127°29′09″E, sea sand, Jul 2020, M.S. Park & Y.W. Lim (SFC20230103-M39, stored in a metabolically inactive state); Jeju-do, Seogwipo-si, 33°13′58″N, 126°18′47″E, sea sand, Jan 2021, M.S. Park & Y.W. Lim (SFC20230103-M40, stored in a metabolically inactive state).

Notes

Cladosporium marinum sp. nov. forms an independent clade in the phylogenetic tree of the C. cladosporioides species complex (Fig. 1), but it has no distinguishable characteristics compared to those of the other species. Molecular and phylogenetic approaches are imperative to identify and differentiate this species from other species.

Cladosporium proteacearum Prasannath, Akinsanmi & R.G. Shivas

MycoBank No: 841221
Figs 2E, 3E

Holotype

BRIP 72301a (Prasannath et al. 2021).

Description

Asexual morphology: Mycelium immersed, composed of septate, branched, pale brown, smooth to verruculose hyphae, 2–5 μm wide. Conidiophores macronematous and micronematous, arising laterally from hyphae, septate, erect to slightly flexuous, unbranched, up to 216 μm long, 2–4.5 μm wide, pale brown, verruculose. Conidiogenous cells integrated, terminal, cylindrical to subcylindrical, 18–59 × 2–4.5 μm, bearing up to three conidiogenous loci, slightly darkened and refractive. Ramoconidia 0–1(−2)-septate, subcylindrical to cylindrical, 9.2–38 × 2.3–4.7 μm [av. (± SD)24.1 (± 7.87) × 3.3 (± 0.58)], pale brown, smooth to verruculose. Conidia forming branched chains, with up to eight conidia in the terminal unbranched part, septate, pale brown, smooth to verruculose, slightly darkened and refractive hila. Small terminal conidia aseptate, ellipsoidal, 3.2–4.8 × 1.9–2.7 μm [av. (± SD) 3.9 (± 0.34) × 2.4 (± 0.2)]. Intercalary conidia 0(–1)-septate, ellipsoidal, oblong-ellipsoidal, 3.4–7.6 × 2.1–3.6 μm [av. (± SD) 4.8 (± 0.83) × 2.5 (± 0.32)]. Secondary ramoconidia 0–1-septate, oblong-ellipsoidal, ellipsoidal, subcylindrical, 4.5–25.6 × 1.9–4.5 μm [av. (± SD) 10.2 (± 4.3) × 3 (± 0.5)].

Cultural characters : Colonies on PDA 28–44 mm diam after 14 d at 25 °C, olive (2F7) to grayish yellow (2B4), reverse dark gray (1F1), velvety, raised, radially furrowed, wrinkled; margin white edge, undulated or lobate; aerial mycelia sparse, without prominent exudates, sporulation profuse, crack formed. Colonies on MEA 20–40 mm diam after 14 d at 25 °C, grayish green (29D7), reverse olive brown (4F8), velvety, powdery, raised, radially furrowed, umbonate, wrinkled; margin white, slightly undulate; aerial mycelia abundantly formed in protruding area (in the center), regular, without prominent exudates, sporulation profuse. Colonies on OA 39–46 mm diam after 14 d at 25 °C, wax white (2B3) to olive (2E5), reverse concolorous, floccose, flat, sometimes wrinkled; margin yellowish white (1A2), regular; aerial mycelia formed in spot, without prominent exudates, sporulation profuse. Colonies on SNA 40–41 mm diam after 14 d at 25 °C, olive yellow (2C7) to olive (1E4), reverse olive (2F5), powdery, flat; margin hyaline, regular; aerial mycelia sparse, without prominent exudates, sporulation profuse.

Habitat and distribution

Isolated from plant material (Racames of Macadamia integrifolia), sea sands, and seaweeds; Australia and Eastern, Southern, and Western Korean seaside and in Republic of Korea.

Additional cultures examined

Republic of Korea. Ulsan, Ulju-gun, 35°23′00″N, 129°20′46″E, sea sand, Jan 2021, M.S. Park & Y.W. Lim (SFC20230103-M55, stored in a metabolically inactive state); Jeju-do, Hallim-eup, 33°23′53″N, 126°14′24″E, seaweed, Jul 2021, M.S. Park & Y.W. Lim (SFC20230103-M53, stored in a metabolically inactive state); Incheon, Ganghwa-gun, 37°35′18″N, 126°26′33″E, sea sand, Jan 2021, M.S. Park & Y.W. Lim (SFC20230103-M54, stored in a metabolically inactive state).

Notes

This strain grows slower and forms less flat colonies on PDA compared to the holotype colonies (70 mm diam, flat) of C. proteacearum (Prasannath et al. 2021). The characteristics of this species on MEA, OA, and SNA media were unavailable because the description on these media is insufficient (Prasannath et al. 2021). Septa are visible in the secondary ramoconidia and intercalary conidia of this strain, but they have not been reported for the holotype (Prasannath et al. 2021). To our knowledge, this is the first report of this species from the Republic of Korea and from marine environments.

Cladosporium snafimbriatum Wonjun Lee & Y.W. Lim, sp. nov.

MycoBank No: 847093
Figs 2F, 3F

Typification

Republic of Korea, Incheon, Ganghwa-gun, 37°36′37″N, 126°31′24″E, mudflat, 12 Jun 2019, M.S. Park & Y.W. Lim (holotype: SFC20230103-M65, stored in a metabolically inactive state).

Etymology

The epithet ‘snafimbriatum’, derived from Latin, refers to the fimbriate margin that appears on the SNA medium.

Description

Asexual morphology: Mycelium immersed, composed of septate, branched, hyaline to subhyaline, verruculose hyphae, nodulose, 3–7.8 μm wide. Conidiophores macronematous and micronematous, arising laterally or terminally from hyphae, sometimes reduced to conidiogenous cells, septate, solitary, erect or somewhat flexuous, non-nodulose, sometimes slightly geniculate, usually unbranched, up to 294 μm long, 2.7–4.2 μm wide, pale brown, verruculose to verrucose. Conidiogenous cells integrated, terminal or intercalary, cylindrical, 9.6–48 × 2.1–4.8 μm, bearing up to four slightly darkened and refractive conidiogenous loci. Ramoconidia 0–2(−3)-septate, subcylindrical, somewhat slightly clavate, 13.3–39.7 × 2.7–4.5 μm [av. (± SD) 22.5 (± 6.32) × 3.5 (± 0.43)], pale brown, verruculose to verrucose. Conidia solitary or forming branched chains, with up to five conidia in the terminal unbranched part, sometimes long and thickened neck between conidia, 0(−1) septate, pale brown, verruculose to verrucose, with protuberant, slightly darkened, and refractive hila. Small terminal conidia 0(−1) septate, ellipsoidal to subcylindrical, clavate, 4.7–8.3 × 2.9–4.5 μm [av. (± SD) 6.1 (± 0.81) × 3.5 (± 0.35)]. Intercalary conidia 0–1(−2) septate, ellipsoidal to subcylindrical, limoniform, clavate, sometimes obclavate, 6.5–14.4 × 2.7–3.9 μm [av. (± SD) 8.5 (± 1.82) × 3.3 (± 0.28)]. Secondary ramoconidia 0–2(−3)-septate, subcylindrical to cylindrical, 12.5–29.9 × 2.9–4.2 μm [av. (± SD) 18.8 (± 3.86) × 3.5 (± 0.34)].

Cultural characters : Colonies on PDA 47–52 mm diam after 14 d at 25 °C, grayish green (30B3) to deep green (30E3), reverse dark gray (1F1), umbonate with slightly elevated central colony, velvety, radially furrowed, wrinkled at the center, sometimes frequently wrinkled on the entire colony; margin undulated, white edge; aerial mycelia moderate, without prominent exudates, sporulation profuse. Colonies on MEA 40–48 mm diam after 14 d at 25 °C, greenish gray (29B2) to grayish green (30C3), reverse dull green (30D3) to dark green (30F3), slightly raised colony, velvety; margin undulated, white edge, sometimes hyaline, radially furrowed, wrinkled; aerial mycelia abundantly formed, dense, somewhat irregular, without prominent exudates, sporulation profuse. Colonies on OA 35–38 mm diam after 14 d at 25 °C, deep green (30E8), reverse concolorous, powdery, slightly floccose, flat; margin yellowish, regular; aerial mycelia sparsely formed in the center, regular, without prominent exudates, sporulation profuse. Colonies on SNA 25–30 mm diam after 14 d at 25 °C, deep green (30E8) to dark green (30F8), reverse concolorous to dark gray (1F8), powdery, slightly floccose in the center, flat; margin olive (2E8 to 2F8), fimbriate; aerial mycelia sparsely to dense, irregular, without prominent exudates, sporulation profuse.

Habitat and distribution

Isolated from mudflats; Western Korean seaside in Republic of Korea.

Additional cultures examined

Republic of Korea, Incheon, Ganghwa-gun, 37°36′36″N, 126°31′13″E, mudflat, 12 Jun 2019, M.S. Park & Y.W. Lim (SFC20230103-M63, stored in a metabolically inactive state); Incheon, Ganghwa-gun, 37°36′36″N, 126°31′13″E, mudflat, 12 Jun 2019, M.S. Park & Y.W. Lim (SFC20230103-M64, stored in a metabolically inactive state).

Notes

This species has a distinguishing characteristic of forming a fimbriate margin on the SNA medium. Cladosporium snafimbriatum is phylogenetically distant with identities of 94.87% for act and 90.73% for tef1, compared to C. allicinum (CBS 121624) (Bensch et al. 2012). Cladosporium snafimbriatum and C. allicinum (Bensch et al. 2012) belong to the same clade and their conidial structures are similar (Bensch et al. 2012). However, the conidiophores of C. snafimbriatum are rougher than those of C. allicinum, and small terminal conidia and intercalary conidia are septate (aseptate in C. allicinum) (Bensch et al. 2012). Cladosporium snafimbriatum grows faster on PDA (22–32 mm), MEA (21–32 mm), and OA (20–32 mm) than C. allicinum (Bensch et al. 2012).

Diversity

The Cladosporium strains were isolated from three types of marine habitats, namely seawater, seaweed, and sediment, from two districts (Table 2). In the open sea in the Western Pacific, two species were detected in seawater (C. halotolerans) and sediments (C. halotolerans and C. marinisedimentum sp. nov.). Cladosporium halotolerans was detected from two districts and all three marine habitats (Table 2). In the intertidal zone of the Republic of Korea, 14 species were discovered from seaweeds (eight species) and sediments (13 species). Cladosporium lagenariiforme sp. nov. was isolated only from seaweed. Six species (C. allicinum, C. marinisedimentum sp. nov., C. snafimbriatum sp. nov., C. velox, C. xanthochromaticum, and C. xylophilum) were only found in the sediment.

Table 2.

Sites and habitats where Cladosporium species were isolated. In the site column, Western Korea, Southern Korea, Eastern Korea, and Western Pacific are represented by the acronym WK, SK, EK, and WP, respectively. “o” indicates that the species was isolated at the corresponding site or the habitat. The new species are in bold.

Species complex Species Site Habitat
WK SK EK WP Seaweed Sediment Seawater
C. cladosporioides C. lagenariiforme o o
C. maltirimosum o o o o o
C. marinum o o o o
C. perangustum o o o o
C. proteacearum o o o o o
C. rectoides o o o o o
C. tenuissimum o o o o
C. xanthochromaticum o o
C. xylophilum o o o
C. herbarum C. allicinum o o
C. snafimbriatum o o
C. sphaerospermum C. halotolerans o o o o o o o
C. maresedimentum o o o
C. velox o o

Discussion

Cladosporium is a cosmopolitan genus, and several of its species are found in various marine environments. We isolated Cladosporium strains from three different habitats in the intertidal zone in the Republic of Korea and in the open sea in the Western Pacific. Fourteen Cladosporium species (88 strains) were identified based on the analyses of ITS, act, and tef1 marker sequences. Five species (C. lagenariiforme, C. maltirimosum, C. marinisedimentum, C. marinum, and C. snafimbriatum) are being reported for the first time. The diversity of Cladosporium in marine environments is much higher than previously reported (Jones et al. 2019).

The topology of the phylogenetic tree generated for Cladosporium s. str. was analogous to that for Cladosporium in previous taxonomic studies (Sandoval-Denis et al. 2016; Ma et al. 2017) (Fig. 1). Nine species (C. allicinum, C. halotolerans, C. perangustum, C. proteacearum, C. rectoides, C. tenuissimum, C. velox, C. xanthochromaticum, and C. xylophilum) matched the reference sequences of known species in the phylogenetic trees (Fig. 1). Cladosporium proteacearum was isolated from the marine environments (seaweed and marine sediments) for the first time in this study, whereas others have already been reported (Garzoli et al. 2018; Liu et al. 2020; Luo et al. 2020; Borzykh et al. 2022). Phylogenetic analyses and morphological characteristics support the notion that the remaining five species are new to science. These five species (C. lagenariiforme, C. maltirimosum, C. marinisedimentum, C. marinum, and C. snafimbriatum) formed each distinct clades as new species to be distinguished with sister species (Fig. 1). Also, distinct morphological differences between the new species and their closely related species are described in the Notes in the Taxonomy section. These morphological characteristics of Cladosporium have been described when proposing new species using molecular data (Bensch et al. 2012, 2018; Pereira et al. 2022).

The environmental conditions in the two districts (the intertidal zone in the Republic of Korea and the open sea in the Western Pacific) are distinct. The Western Pacific deep sea, where C. halotolerans and C. marinisedimentum sp. nov. were isolated (Table 2), is an environment under high pressure and cold temperature, which hinders the activation and growth of fungi. However, Cladosporium can adapt to harsh marine conditions by possessing halotolerant and psychrotolerant properties. Cladosporium has been reported to grow under 40 MPa (= 400 bar) (Peng et al. 2021) and in cold conditions (Dhakar and Pandey 2016), and continuously isolated from deep-sea environments (Singh et al. 2012; Luo et al. 2020; Marchese et al. 2021). Thus, Cladosporium species are presumed to survive as dormant spores under harsh conditions. Cladosporium halotolerans is the only Cladosporium species isolated from seawater habitats in the Western Pacific in this study. Seawater is a low-density habitat that diffuses quickly. To circumvent this, seawater was filtered to isolate marine fungi, but the quantity of seawater or sampling time may be insufficient. It is necessary to perform research on growing or germinating spores in the two environments to understand the role of Cladosporium in deep-sea environments.

In contrast, the intertidal zones are relatively warmer and under lower pressures. Various Cladosporium species inhabit seaweeds and sediments in the intertidal zones. Eight species (C. halotolerans, C. lagenariiforme sp. nov., C. maltirimosum sp. nov., C. marinum sp. nov., C. perangustum, C. proteacearum, C. rectoides, and C. tenuissimum) were isolated from seaweeds in this study, and many studies have verified that Cladosporium degrades seaweeds (Lee et al. 2019; Patyshakuliyeva et al. 2020). Seaweeds can accumulate in sediments and become nutrients for saprobes, such as Cladosporium. Recently, plastic waste has been flowing into the marine environments, and Cladosporium species isolated from such environments have been shown to possess the ability to degrade plastics (Kim et al. 2022; Zhang et al. 2022).

In sediments in the intertidal zone, where we found all species except C. lagenariiforme sp. nov., we found the most diversified Cladosporium species (C. allicinum, C. halotolerans, C. maltirimosum sp. nov., C. marinisedimentum sp. nov., C. marinum sp. nov., C. perangustum, C. proteacearum, C. rectoides, C. snafimbriatum sp. nov., C. tenuissimum, C. velox, C. xanthochromaticum, and C. xylophilum). Sediments in intertidal zone are rich in various nutrients through inputs from terrestrial environments and open sea, which may provide abundant nutrients for fungal survival or growth (Jickells 1998; Santos et al. 2021). Besides, the melanin production of Cladosporium may facilitate survival in the sediments affected by environmental stresses such as UV, salinity, and temporary dryness (Gunde-Cimerman et al. 2000; Gessler et al. 2014).

The diversity of Cladosporium species needs to be studied because Cladosporium has frequently been detected in marine environments (Suryanarayanan 2012; Jones et al. 2019; Luo et al. 2020). This work, which detected a total of fourteen Cladosporium species (including five new species), can broaden the understanding of the biodiversity and ecology of marine Cladosporium species. However, studies on mechanisms of fungal stress adaptation in extreme marine environment are scarce. In future, we will investigate the mechanisms of ecological adaptation of Cladosporium species in marine environments and intend to study the different secondary metabolites produced by them for adapting to a wide range of environments.

Acknowledgments

We would like to thank Editage (www.editage.co.kr) for English language editing. We greatly appreciate Dr. Bensch for her advice on the new species names and KIOST members for sampling the precious samples from the Western Pacific.

Additional information

Conflict of interest

The authors have declared that no competing interests exist.

Ethical statement

No ethical statement was reported.

Funding

This work was supported by the management of Marine Fishery Bio-resources Center (2023), funded by the National Marine Biodiversity Institute of Korea (MABIK). This research was supported by the High Seas BioResource Program of the Korea Institute of Marine Science & Technology Promotion (KIMST) funded by the Ministry of Oceans and Fisheries (KIMST_20210646).

Author contributions

Conceptualization: YWL, WL, JSK. Data curation: WL, CWS. Formal analysis: WL, JSK. Funding acquisition: YWL. Investigation: WL, JSK, SHK, YWL. Methodology: CWS. Project administration: JWL. Resources: SHK, YWL, JSK, WL, JWL. Software: CWS. Supervision: YWL, JSK. Validation: YC, CWS, JSK, WL, JWL. Visualization: WL. Writing - original draft: CWS, YC, JSK, WL, YWL, JWL. Writing - review and editing: YC, WL, YWL, CWS, JSK.

Author ORCIDs

Wonjun Lee https://orcid.org/0000-0002-7227-0777

Ji Seon Kim https://orcid.org/0000-0003-1869-7347

Chang Wan Seo https://orcid.org/0000-0002-5948-1836

Jun Won Lee https://orcid.org/0000-0003-1416-3428

Sung Hyun Kim https://orcid.org/0000-0002-5505-9451

Yoonhee Cho https://orcid.org/0000-0002-0743-0914

Young Woon Lim https://orcid.org/0000-0003-2864-3449

Data availability

All of the data that support the findings of this study are available in the main text or Supplementary Information.

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Supplementary material

Supplementary material 1 

Strains of Cladosporium isolated in this study with detailed information on habitats and regions and GenBank accession numbers

Wonjun Lee, Ji Seon Kim, Chang Wan Seo, Jun Won Lee, Sung Hyun Kim, Yoonhee Cho, Young Woon Lim

Data type: tables (Excel file)

This dataset is made available under the Open Database License (http://opendatacommons.org/licenses/odbl/1.0/). The Open Database License (ODbL) is a license agreement intended to allow users to freely share, modify, and use this Dataset while maintaining this same freedom for others, provided that the original source and author(s) are credited.
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