Research Article |
Corresponding author: Young Woon Lim ( ywlim@snu.ac.kr ) Academic editor: Rungtiwa Phookamsak
© 2023 Wonjun Lee, Ji Seon Kim, Chang Wan Seo, Jun Won Lee, Sung Hyun Kim, Yoonhee Cho, Young Woon Lim.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Lee W, Kim JS, Seo CW, Lee JW, Kim SH, Cho Y, Lim YW (2023) Diversity of Cladosporium (Cladosporiales, Cladosporiaceae) species in marine environments and report on five new species. MycoKeys 98: 87-111. https://doi.org/10.3897/mycokeys.98.101918
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Cladosporium species are cosmopolitan fungi, characterized by olivaceous or dark colonies with coronate conidiogenous loci and conidial hila with a central convex dome surrounded by a raised periclinal rim. Cladosporium species have also been discovered in marine environments. Although many studies have been performed on the application of marine originated Cladosporium species, taxonomic studies on these species are scarce. We isolated Cladosporium species from three under-studied habitats (sediment, seawater, and seaweed) in two districts including an intertidal zone in the Republic of Korea and the open sea in the Western Pacific Ocean. Based on multigenetic marker analyses (for the internal transcribed spacer, actin, and translation elongation factor 1), we identified fourteen species, of which five were found to represent new species. These five species were C. lagenariiforme sp. nov., C. maltirimosum sp. nov., C. marinum sp. nov. in the C. cladosporioides species complex, C. snafimbriatum sp. nov. in the C. herbarum species complex, and C. marinisedimentum sp. nov. in the C. sphaerospermum species complex. Morphological characteristics of the new species and aspects of differences with the already known species are described herein together with molecular data.
deep sea, Dothideomycetes, intertidal zone, marine fungi, open sea, Republic of Korea, taxonomy, Western Pacific
Cladosporium Link is a cosmopolitan genus in the order Cladosporiales of Dothideomycetes (
Members of Cladosporium are commonly found in terrestrial environments, such as caves (
As part of exploring marine fungi for the Marine Fungal Resource Bank, we have been continuously isolating marine fungi. In this study, Cladosporium strains isolated from various marine habitats were tentatively identified based on morphological characteristics and ITS sequence analysis. The present study was aimed at (1) identifying Cladosporium strains at the species level using multigenetic marker analyses (ITS, act, and tef1) and (2) examining the niche specificity of Cladosporium species by district and habitat. Fourteen Cladosporium species were identified, of which five were confirmed as novel species – three in the C. cladosporioides species complex, and one each in the C. herbarum and C. sphaerospermum species complexes. A detailed morphological description of the new species along with genetic marker sequences, is presented, herein.
Sampling was performed in two separate districts – an intertidal zone of the Republic of Korea and the open sea in the Western Pacific (Table
Region | Habitat | District | GPS coordinates |
---|---|---|---|
CJ (ChuJa-do) | Seaweed | Republic of Korea | 33°58′14″N ~ 33°55′46″N, 126°16′55″W ~ 126°20′31″W |
GH (GangHwa) | Sediment (Sea sand) | Republic of Korea | 37°35′18″N, 126°26′33″W |
Sediment (Mudflat) | Republic of Korea | 37°36′36″N, 126°31′13″W | |
GS (GoSeong) | Sediment (Sea sand) | Republic of Korea | 38°28′39″N, 128°26′22″W |
JJ (JeJu-do) | Seaweed | Republic of Korea | 33°23′53″N, 126°14′24″W |
Sediment (Sea sand) | Republic of Korea | 33°14′21″N, 126°20′02″W | |
MA (MuAn) | Sediment (Mudflat) | Republic of Korea | 35°01′40″N, 126°25′11″W |
Sediment (Sea sand) | Republic of Korea | 35°03′44″N, 126°20′13″W | |
SC (SunCheon) | Sediment (Mudflat) | Republic of Korea | 34°50′48″N, 127°29′33″W |
Sediment (Sea sand) | Republic of Korea | 34°50′29″N, 127°29′09″W | |
US (UlSan) | Sediment (Sea sand) | Republic of Korea | 35°23′00″N, 129°20′46″W |
C1 (CTD1) | Sea water | Western Pacific | 17°19′00″N, 149°51′18″W |
C2 (CTD2) | Sea water | Western Pacific | 16°01′39″N, 151°49′19″W |
C3 (CTD3) | Sea water | Western Pacific | 19°31′18″N, 151°27′19″W |
G1 (GPC1) | Sediment (5730 m) | Western Pacific | 15°22′42″N, 151°40′50″W |
G2 (GPC2) | Sediment (5730 m) | Western Pacific | 20°45′57″N, 152°35′32″W |
MC (Multiple corer) | Sediment (5814 m) | Western Pacific | 16°06′15″N, 152°25′00″W |
Seawater samples in Niskin bottles were filtered immediately through a sterile polycarbonate track-etched (PCTE) membrane filter (d = 47 mm, ϕ = 0.2 μm, GVS Filter Technology, Sanford, USA) using a vacuum pump. The filters were then placed on dichloran rose bengal chloramphenicol (DRBC; Difco) agar, supplemented with sterilized seawater (SSW), to isolate fungi. Seaweed samples were cut into 0.5 × 0.5 cm2 pieces and placed on DRBC agar. For the sediment samples, 5 g of each sample was first diluted with 45 mL of SSW in a 50 mL falcon tube, and 5 mL of the mixture was further diluted with 45 mL of SSW. Approximately 150 μL of the dilution was spread on potato dextrose agar (PDA; Difco), DRBC agar, and glucose yeast extract agar (GYA; 1 g glucose, 0.1 g yeast extract, 0.5 g peptone, and 15 g/L). Sabouraud dextrose agar (SDA; Difco) medium was used for the diluted samples from the intertidal zone and open sea. Whenever colonies grew on a medium, each single colony was transferred onto PDA supplemented with SSW to obtain a pure culture. Fungal isolates were stored in 20% glycerol with SSW at −80 °C and deposited in the Seoul National University Fungus Collection (
The fungal mycelium mats of each isolate grown on PDA were ground using a Bead Ruptor Elite Homogenizer (OMNI International, Kennesaw, GA, USA). Genomic DNA was extracted using an AccuPrep Genomic DNA Extraction Kit (Bioneer Co., Daejeon, Korea), following a modified manufacturer’s protocol, in which CTAB Extraction Solution (Biosesang, Korea) was used instead of the TL buffer in the kit.
The ITS region and partial regions of two protein-coding genes, act and tef1, were amplified using polymerase chain reaction (PCR). Each region was amplified using the following primer sets: ITS1F (
Sanger sequencing was performed in both forward and reverse directions using an ABI Prism 3730xl Genetic Analyzer (Life Technologies, Gaithersburg, MD, USA) by Macrogen (Seoul, Republic of Korea). The generated sequences were proofread and merged using the “De novo assemble” function in the Geneious Prime software ver. 2022. 0. 2. (Biomatters Ltd., San Diego, CA, USA). All the assembled sequences were deposited in GenBank (Suppl. material
Reference sequences of the genus Cladosporium were retrieved from GenBank (Suppl. material
Morphological observations of the new species were performed as described by
A total of 88 fungal strains isolated from marine environments were initially identified based on ITS sequences and morphological characteristics as members of the genus Cladosporium. A total of 77 strains were from the intertidal zones in the Republic of Korea and 11 were from the open sea in the Western Pacific. For identification at species level, concatenated phylogenetic analysis was carried out using ITS, act, and tef1 sequences. Sequences from 55 of the 88 strains were analyzed together with sequences from 168 reference strains. For phylogenetic analyses, 666 sequences were used – 165 sequences (ITS: 55, act: 55, tef1: 55) that were newly generated in this study and 501 reference sequences (ITS: 168, act: 166, tef1: 167). The final combined alignment comprised 1,205 characters, including gaps, of which ITS, act, and tef1 contained 507, 250, and 448, respectively. In the alignment data, 450 conserved (ITS: 332, act: 79, tef1: 49), 602 variable (ITS: 158, act: 155, tef1: 289), and 449 informative (ITS: 79, act: 128, tef1: 242) characters were included.
The analyzed Cladosporium strains belonged to fourteen monophyletic subclades. Nine clades were respectively matched with C. allicinum, C. halotolerans, C. perangustum, C. proteacearum, C. rectoides, C. tenuissimum, C. velox, C. xanthochromaticum, and C. xylophilum described previously (
Maximum likelihood (ML) tree of Cladosporium, inferred based on ITS, act, and tef1 sequences. The values at each node indicate the bootstrap of ML (≥ 70) and the posterior probability (PP; ≥ 0.90) of Bayesian inference (BI) analyses. Thick lines on branches indicate 100 bootstrap and 1.00 PP support. The tree is rooted to Cercospora beticola (CBS 116456). The small tree on the upper left represents the topology of species complexes of the genus. The filled triangles correspond to the species complex(es) shown. The colored circles symbolize habitats where the species were isolated. Previously described species are grouped in gray boxes, and blue boxes indicate new species. Strains with newly generated sequences are in red, with the holotypes in bold. The holotype and epitype for the reference strains are represented with “*” and “**”, respectively.
Republic of Korea. Jeju-do, Chuja-myeon, 33°57′11.88″N, 126°18′07.56″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (holotype SFC20230103-M23, stored in a metabolically inactive state).
Morphological characteristics of the new and unrecorded species on PDA, MEA, OA, and SNA media A Cladosporium lagenariiforme sp. nov. B Cladosporium maltirimosum sp. nov. C Cladosporium marinisedimentum sp. nov. D Cladosporium marinum sp. nov. E Cladosporium proteacearum F Cladosporium snafimbriatum sp. nov. “F” and “R” represent the front and the reverse sides of the culture plate, respectively. PDA: potato dextrose agar; MEA: malt extract agar; OA: oatmeal agar; SNA: synthetic nutrient-poor agar.
The term ‘lagenariiforme’ was derived from the generic name of a calabash (Lagenaria) to describe the shape of the ramoconidia and secondary ramoconidia.
Morphological characteristics of conidial structures on SNA A Cladosporium lagenariiforme sp. nov. B Cladosporium maltirimosum sp. nov. C Cladosporium marinisedimentum sp. nov. D Cladosporium marinum sp. nov. E Cladosporium proteacearum F Cladosporium snafimbriatum sp. nov. Scale bars: 10 μm (A–F).
Asexual morphology: Mycelium mainly immersed, composed of septate, branched, hyaline, verruculose hyphae, 1.8–4.3 μm wide. Conidiophores macronematous and micronematous, arising laterally from hyphae, sometimes reduced to conidiogenous cells, septate, erect to slightly flexuous, slightly nodulose, branched, up to 208 μm long, 1.7–3 μm wide, pale brown, verrucose. Conidiogenous cells integrated, terminal and intercalary, cylindrical to subcylindrical, 15.1–37.6 × 1.4–2.9 μm, bearing up to four slightly darkened and refractive conidiogenous loci. Ramoconidia 0(–2)-septate, subcylindrical to ellipsoidal, obclavate, sometimes calabash-like constricted at the center, 8.7–26.4 × 1.9–3.5 μm [av. (± SD) 15.2 (± 5.46) × 2.6 (± 0.39)], pale brown, verruculose. Conidia forming branched chains, with up to six conidia in the terminal unbranched part, long neck between conidia, aseptate, pale brown, smooth to verruculose, with protuberant, slightly darkened, and refractive hila. Small terminal conidia aseptate, ellipsoidal, 2.1–3.5 × 1.3–2.3 μm [av. (± SD) 3 (± 0.32) × 1.9 (± 0.22)]. Intercalary conidia aseptate, ellipsoidal to limoniform, 2.9–5.3 × 1.6–2.7 μm [av. (± SD) 4.0 (± 0.47) × 2.0 (± 0.25)]. Secondary ramoconidia 0(−1)-septate, subcylindrical to ellipsoidal, obclavate, sometimes calabash-like constricted at the center, 7.3–21.6 μm long × 2.0–3.7 μm [av. (± SD) 13.6 (± 4.01) × 2.6 (± 0.36)].
Cultural characters : Colonies on PDA 52–70 mm diam after 14 d at 25 °C, greenish gray (1B2) to olive (1E3), reverse dark gray (1F8), floccose, velvety, crateriform, radially furrowed, wrinkled, usually significantly wrinkled in the margin part; margin yellowish gray (4B2) edge, slightly lobate; aerial mycelia abundantly formed, dense, with few exudates, sporulation profuse. Colonies on MEA 46–74 mm diam after 14 d at 25 °C, gray (1C1) to olive gray (1D3), reverse dark gray (1F8), floccose-woolly, umbonate, (frequently) radially furrowed, wrinkled, sometimes significantly wrinkled in the margin part; margin whitish edge, slightly lobate, rarely undulate; aerial mycelia abundantly formed, dense, with prominent exudates, sporulation profuse. Colonies on OA 56–68 mm diam after 14 d at 25 °C, olive yellow (3C8), reverse concolorous, woolly-floccose, raised, radially furrowed; margin yellowish gray (3C2), regular; aerial mycelia abundantly formed, without prominent exudates, sporulation moderate. Colonies on SNA 36–37 mm diam after 14 d at 25 °C, olive yellow (3E8) to olive (3E8), reverse concolorous, powdery, flat; margin yellowish white (2A2), regular; aerial mycelia abundantly formed, without prominent exudates, sporulation profuse.
Isolated from seaweeds; Southern Korean seaside in Republic of Korea.
Republic of Korea. Jeju-do, Chuja-myeon, 33°23′53″N, 126°14′24″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M20, stored in a metabolically inactive state); Jeju-do, Chuja-myeon, 33°23′53″N, 126°14′24″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M21, stored in a metabolically inactive state); Jeju-do, Chuja-myeon, 33°23′53″N, 126°14′24″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M22, stored in a metabolically inactive state).
Cladosporium lagenariiforme sp. nov. is phylogenetically closely related to C. angulosum and C. xanthochromaticum (Fig.
Republic of Korea. Jeollanam-do, Muan-gun, 35°03′44″N, 126°20′13″E, sea sand, Jul 2021, M.S. Park & Y.W. Lim (holotype SFC20230103-M51, stored in a metabolically inactive state).
The epithet ‘maltirimosum’ refers to the cracked colony that appears on the MEA medium derived from Latin rimosus (cracked).
Asexual morphology: Mycelium immersed, composed of septate, branched, hyaline to subhyaline, verruculose hyphae, nodulose, 2–5.5 μm wide. Conidiophores macronematous and micronematous, arising laterally from hyphae, septate, erect to slightly flexuous, non-nodulose, unbranched, up to 278 μm long, 1.9–4.3 μm wide, pale brown, verruculose. Conidiogenous cells integrated, terminal and intercalary, cylindrical to subcylindrical, 16–45.7 × 2.7– 4.1 μm, bearing up to three protuberant, slightly darkened, and refractive conidiogenous loci. Ramoconidia 0(−1)-septate, subcylindrical to ellipsoidal, 8.4–23 × 2.2–5.2 μm [av. (± SD)15.3 (± 4.5) × 3.6 (± 0.77)], pale brown, verruculose. Conidia solitary or forming branched chains, with up to seven conidia in the terminal unbranched part, aseptate, pale green, smooth to verruculose, with protuberant, slightly darkened, and refractive hila. Small terminal conidia aseptate, ellipsoidal, 4.2–6.7 × 2.2–3.3 μm [av. (± SD) 5.4 (± 0.61) × 2.8 (± 0.29)]. Intercalary conidia aseptate, ellipsoidal to limoniform, rarely fusiform, 4.6–6.7 × 1.8–3.5 μm [av. (± SD) 5.5 (± 0.5) × 2.7 (± 0.35)]. Secondary ramoconidia 0(−1)-septate, subcylindrical to ellipsoidal, 8.9–22.5 × 2.7–5.6 μm [av. (± SD) 15.6 (± 3.34) × 3.6 (± 0.67)].
Cultural characters : Colonies on PDA 44–63 mm diam after 14 d at 25 °C, olive yellow (2D8) to olive (3E8), reverse dark gray (1F1), powdery, floccose, sometimes slightly fluffy, radially furrowed, wrinkled; margin white edge, slightly undulated or lobate, sometimes regular; aerial mycelia formed, moderate, without prominent exudates, sporulation profuse. Colonies on MEA 34–36 mm diam after 14 d at 25 °C, gray (1B1 to 1E1), reverse concolorous to dark gray (1F1), slightly crateriform due to cracked medium, floccose, woolly, radially furrowed, wrinkled; margin white, undulate; aerial mycelia abundantly formed, without prominent exudates, sporulation profuse. Colonies on OA 52–63 mm diam after 14 d at 25 °C, grayish green (1D3) to olive (1E5), reverse concolorous, powdery, floccose, fluffy, sometimes woolly, radially furrowed, wrinkled, flat; margin yellowish white (1A2), regular; aerial mycelia formed in spots, sometimes without prominent exudates, sporulation profuse. Colonies on SNA 37–39 mm diam after 14 d at 25 °C, grayish green (1D4) to olive (1E4), reverse concolorous to olive (3F8), powdery, flat; margin whitish, undulate; aerial mycelia absent, without prominent exudates, sporulation profuse.
Isolated from mudflats, sea sands, and seaweeds; Eastern, Southern, and Western Korean seaside in Republic of Korea.
Republic of Korea, Jeju-do, Hallim-eup, 33°23′53″N, 126°14′24″E, seaweed, Jul 2021, M.S. Park & Y.W. Lim (SFC20230103-M41, stored in a metabolically inactive state); Jeju-do, Chuja-myeon, 33°57′10″N, 126°20′18″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M42, stored in a metabolically inactive state); Jeju-do, Chuja-myeon, 33°57′11.88″N, 126°18′07.56″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M43, stored in a metabolically inactive state); Jeju-do, Hallim-eup, 33°23′53″N, 126°14′24″E, seaweed, 15 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M44, stored in a metabolically inactive state); Jeollanam-do, Muan-gun, 35°01′40″N, 126°25′16″E, mudflat, Jan 2020, M.S. Park & Y.W. Lim (SFC20230103-M45, stored in a metabolically inactive state); Gangwon-do, Goseong-gun, 38°28′39″N, 128°26′22″E, Sea sand, 31 Oct 2016, M.S. Park & Y.W. Lim (SFC20170718-M12, stored in a metabolically inactive state); Ulsan, Ulju-gun, 35°23′00″N, 129°20′46″E, sea sand, Apr 2017, M.S. Park & Y.W. Lim (SFC20230103-M47, stored in a metabolically inactive state); Jeollanam-do, Suncheon-si, 34°50′29″N, 127°29′09″E, Sea sand, Jan 2020, M.S. Park & Y.W. Lim (SFC20230103-M48, stored in a metabolically inactive state); Gangwon-do, Goseong-gun, 38°28′39″N, 128°26′22″E, sea sand, Jan 2020, M.S. Park & Y.W. Lim (SFC20230103-M49, stored in a metabolically inactive state); Jeollanam-do, Suncheon-si, 34°50′29″N, 127°29′09″E, sea sand, Jul 2020, M.S. Park & Y.W. Lim (SFC20230103-M50, stored in a metabolically inactive state); Jeollanam-do, Suncheon-si, 34°50′29″N, 127°29′09″E, sea sand, Jul 2021, M.S. Park & Y.W. Lim (SFC20230103-M52, stored in a metabolically inactive state).
Cladosporium maltirimosum sp. nov. is closely related to C. anthropophilum and C. devikae and formed a well-supported clade (Fig.
Western Pacific Ocean, 15°22.697'N, 151°40.836'E, depth 5730 m, deep-sea sediment, 23 May 2021, Y.J. Kim, Wonjun Lee & Y.W. Lim (holotype SFC20230103-M28, stored in a metabolically inactive state).
The epithet ‘marinisedimentum’, derived from Latin, refers to ‘marine sediment,’ a habitat where the species was isolated.
Asexual morphology: Mycelium immersed, composed of septate, branched, pale brown or subhyaline, verruculose hyphae, 2.6–4.5 μm wide. Conidiophores macronematous and micronematous, arising laterally or terminally from hyphae, sometimes reduced to conidiogenous cells, septate, erect to slightly flexuous, non-nodulose, branched, up to 220 μm long, 1.5–3.7 μm wide, pale brown, smooth to verruculose. Conidiogenous cells integrated, terminal, rarely intercalary, filiform to cylindrical, 16.2–41.5 × 2–3.2 μm, bearing up to three slightly darkened and refractive conidiogenous loci. Ramoconidia 0–1(–3)-septate, subcylindrical to cylindrical, 9.2–31.8 × 1.7–3.3 μm [av. (± SD) 17.4 (± 6.07) × 2.6 (± 0.34)], pale brown, smooth to verruculose. Conidia forming branched chains, with up to four conidia in the terminal unbranched part, aseptate, pale brown, smooth to verruculose, with protuberant, slightly darkened, and refractive hila. Small terminal conidia aseptate, subglobose to ellipsoidal, 2.6–4.6 × 2.1–3.2 μm [av. (± SD) 3.6 (± 0.52) × 2.6 (± 0.23)]. Intercalary conidia 0(−1)-septate, subglobose to ellipsoidal-limoniform, ovoid, 3.2–9.1 × 2.1–3.6 μm [av. (± SD) 4.6 (± 1.25) × 2.8 (± 0.34)]. Secondary ramoconidia 0–1(−2)-septate, subcylindrical to ellipsoidal, 7.8–31.6 × 2.1–3.4 μm [av. (± SD) 13.9 (± 4.88) × 2.7 (± 0.34)].
Cultural characters : Colonies on PDA 37–46 mm diam after 14 d at 25 °C, olive (2E6 to 3E8), reverse dark gray (1F1), velvety, powdery, radially furrowed, wrinkled, umbonate; margin white edge, slightly lobate; aerial mycelia sparsely formed, without prominent exudates, sporulation profuse. Colonies on MEA 36–43 mm diam after 14 d at 25 °C, olive gray (2D2) to olive (2E3), reverse dark gray (1F1), powdery, velvety, undulate, slightly raised, radially furrowed, wrinkled; margin whitish edge, slightly lobate or undulate; aerial mycelia moderately formed, somewhat irregular, without prominent exudates, sporulation profuse. Colonies on OA 33–37 mm diam after 14 d at 25 °C, olive gray (2E2) to olive (2F3), reverse concolorous, powdery, floccose, flat; margin whitish, regular; aerial mycelia abundantly formed in radial form, without prominent exudates, sporulation profuse. Colonies on SNA 19–23 mm diam after 14 d at 25 °C, olive (2F3 to 2F8), reverse concolorous, powdery, flat; margin yellowish white (1A2), regular; aerial mycelia sparsely formed, without prominent exudates, sporulation profuse.
Isolated from deep-sea sediments and sea sands; Eastern and Southern Korean seaside in Republic of Korea and Eastern Mariana trench in Western Pacific Ocean.
Western Pacific Ocean, 16°06′15″N, 152°25′00″E, depth 5814 m, deep-sea sediment, 27 May 2021, Y.J. Kim, Wonjun Lee & Y.W. Lim (MABIK FU00001143, stored in a metabolically inactive state); Republic of Korea. Gangwon-do, Goseong-gun, 38°28′39″N, 128°26′22″E, sea sand, Jul 2021, M.S. Park & Y.W. Lim (SFC20230103-M29, stored in a metabolically inactive state).
Cladosporium marinisedimentum sp. nov. is phylogenetically related to C. sphaerospermum. The former species has broader hyphae than the latter one (1–3 μm) (
Republic of Korea. Jeju-do, Chuja-myeon, 33°23′53″N, 126°14′24″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (holotype SFC20230103-M33, stored in a metabolically inactive state).
The name ‘marinum’, derived from Latin, refers to the various marine substrates (seaweed, sea sand, and mudflat) from which the species was isolated.
Asexual morphology: Mycelium superficial and immersed, composed of septate, branched, hyaline to subhyaline, smooth to verruculose hyphae, nodulose, 2–5.7 μm wide. Conidiophores macronematous and micronematous, arising laterally or terminally from hyphae, (sometimes reduced to conidiogenous cells), septate, slightly flexuous, non-nodulose, usually unbranched or branched, up to 243 μm long, 2–4 μm wide, pale brown, verruculose to verrucose. Conidiogenous cells integrated, terminal and intercalary, cylindrical to subcylindrical, 20.5–47.7 × 2–3.6 μm, bearing up to four slightly darkened and refractive conidiogenous loci. Ramoconidia 0–1(–2)-septate, subcylindrical to cylindrical, 10.2–28.171 × 2.4–4.1 μm [av. (± SD) 17.3 (± 2.39) × 2.9 (± 0.37)], pale brown, verruculose. Conidia forming branched chains, with up to five conidia in the terminal unbranched part, long neck area between conidia, aseptate, pale brown, smooth to verruculose, with protuberant, slightly darkened and refractive hila. Small terminal conidia aseptate, obovoidal to ellipsoidal, 2.9–5.3 × 2–3 μm [av. (± SD) 3.8 (± 0.53) × 2.5 (± 0.25)]. Intercalary conidia aseptate, very rarely 1-septate, ellipsoidal to limoniform, obovoid, sometimes subcylindrical, 2.7–6.2 × 1.8–2.8 μm [av. (± SD) 4.2 (± 0.76) × 2.3 (± 0.22)]. Secondary ramoconidia 0–1-septate, subcylindrical to cylindrical, slightly obclavate, 8.5–28.2 × 2.3–3.7 μm [av. (± SD) 14.5 (± 4.38) × 2.9 (± 0.35)].
Cultural characters : Colonies on PDA 37–66 mm diam after 14 d at 25 °C, olive (3E3 to 3F4), reverse dark gray (1F1), floccose-velvety, sometimes woolly, raised, radially furrowed, wrinkled, raised; margin white, slightly hyaline edge, undulated; aerial mycelia abundantly formed, with numerous prominent exudates, sporulation profuse. Colonies on MEA 35–40 mm diam after 14 d at 25 °C, grayish white (1B1) to olive gray (3D2), reverse dark gray (1F1), velvety, raised to crateriform, radially furrowed at the margin region, wrinkled; margin white, regular; aerial mycelia abundantly formed, dense, without prominent exudates, sporulation profuse. Colonies on OA 41–47 mm diam after 14 d at 25 °C, gray (1C1 to 1E1), reverse concolorous, velvety, floccose, raised, radially furrowed; margin yellowish, regular; aerial mycelia abundantly formed, with few exudates, sporulation profuse. Colonies on SNA 37–41 mm diam after 14 d at 25 °C, olive (3D3) to olive yellow (3E8), reverse olive (3D3 to 3F3), slightly fluffy-floccose, powdery, flat; margin yellowish white (2A2), hyaline, undulate; aerial mycelia abundantly moderate, without prominent exudates, sporulation profuse.
Isolated from mudflats, sea sands, and seaweeds; Southern and Western Korean seaside in Republic of Korea.
Republic of Korea. Jeju-do, Chuja-myeon, 33°23′53″N, 126°14′24″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M30, stored in a metabolically inactive state); Jeju-do, Chuja-myeon, 33°23′53″N, 126°14′24″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M31, stored in a metabolically inactive state); Jeju-do, Chuja-myeon, 33°23′53″N, 126°14′24″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M32, stored in a metabolically inactive state); Jeju-do, Chuja-myeon, 33°57′50″N, 126°17′38″E, seaweed, 31 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M34, stored in a metabolically inactive state); Jeju-do, Hallim-eup, 33°23′53″N, 126°14′24″E, seaweed, 15 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M35, stored in a metabolically inactive state); Jeju-do, Hallim-eup, 33°23′53″N, 126°14′24″E, seaweed, 15 Aug 2021, M.S. Park & Y.W. Lim (SFC20230103-M36, stored in a metabolically inactive state); Jeollanam-do, Muan-gun, 35°01′40″N, 126°25′16″E, mudflat, Apr 2017, M.S. Park & Y.W. Lim (SFC20230103-M37, stored in a metabolically inactive state); Jeollanam-do, Muan-gun, 35°03′44″N, 126°20′13″E, sea sand, Oct 2016, M.S. Park & Y.W. Lim (SFC20230103-M38, stored in a metabolically inactive state); Jeollanam-do, Suncheon-si, 34°50′29″N, 127°29′09″E, sea sand, Jul 2020, M.S. Park & Y.W. Lim (SFC20230103-M39, stored in a metabolically inactive state); Jeju-do, Seogwipo-si, 33°13′58″N, 126°18′47″E, sea sand, Jan 2021, M.S. Park & Y.W. Lim (SFC20230103-M40, stored in a metabolically inactive state).
Cladosporium marinum sp. nov. forms an independent clade in the phylogenetic tree of the C. cladosporioides species complex (Fig.
BRIP 72301a (
Asexual morphology: Mycelium immersed, composed of septate, branched, pale brown, smooth to verruculose hyphae, 2–5 μm wide. Conidiophores macronematous and micronematous, arising laterally from hyphae, septate, erect to slightly flexuous, unbranched, up to 216 μm long, 2–4.5 μm wide, pale brown, verruculose. Conidiogenous cells integrated, terminal, cylindrical to subcylindrical, 18–59 × 2–4.5 μm, bearing up to three conidiogenous loci, slightly darkened and refractive. Ramoconidia 0–1(−2)-septate, subcylindrical to cylindrical, 9.2–38 × 2.3–4.7 μm [av. (± SD)24.1 (± 7.87) × 3.3 (± 0.58)], pale brown, smooth to verruculose. Conidia forming branched chains, with up to eight conidia in the terminal unbranched part, septate, pale brown, smooth to verruculose, slightly darkened and refractive hila. Small terminal conidia aseptate, ellipsoidal, 3.2–4.8 × 1.9–2.7 μm [av. (± SD) 3.9 (± 0.34) × 2.4 (± 0.2)]. Intercalary conidia 0(–1)-septate, ellipsoidal, oblong-ellipsoidal, 3.4–7.6 × 2.1–3.6 μm [av. (± SD) 4.8 (± 0.83) × 2.5 (± 0.32)]. Secondary ramoconidia 0–1-septate, oblong-ellipsoidal, ellipsoidal, subcylindrical, 4.5–25.6 × 1.9–4.5 μm [av. (± SD) 10.2 (± 4.3) × 3 (± 0.5)].
Cultural characters : Colonies on PDA 28–44 mm diam after 14 d at 25 °C, olive (2F7) to grayish yellow (2B4), reverse dark gray (1F1), velvety, raised, radially furrowed, wrinkled; margin white edge, undulated or lobate; aerial mycelia sparse, without prominent exudates, sporulation profuse, crack formed. Colonies on MEA 20–40 mm diam after 14 d at 25 °C, grayish green (29D7), reverse olive brown (4F8), velvety, powdery, raised, radially furrowed, umbonate, wrinkled; margin white, slightly undulate; aerial mycelia abundantly formed in protruding area (in the center), regular, without prominent exudates, sporulation profuse. Colonies on OA 39–46 mm diam after 14 d at 25 °C, wax white (2B3) to olive (2E5), reverse concolorous, floccose, flat, sometimes wrinkled; margin yellowish white (1A2), regular; aerial mycelia formed in spot, without prominent exudates, sporulation profuse. Colonies on SNA 40–41 mm diam after 14 d at 25 °C, olive yellow (2C7) to olive (1E4), reverse olive (2F5), powdery, flat; margin hyaline, regular; aerial mycelia sparse, without prominent exudates, sporulation profuse.
Isolated from plant material (Racames of Macadamia integrifolia), sea sands, and seaweeds; Australia and Eastern, Southern, and Western Korean seaside and in Republic of Korea.
Republic of Korea. Ulsan, Ulju-gun, 35°23′00″N, 129°20′46″E, sea sand, Jan 2021, M.S. Park & Y.W. Lim (SFC20230103-M55, stored in a metabolically inactive state); Jeju-do, Hallim-eup, 33°23′53″N, 126°14′24″E, seaweed, Jul 2021, M.S. Park & Y.W. Lim (SFC20230103-M53, stored in a metabolically inactive state); Incheon, Ganghwa-gun, 37°35′18″N, 126°26′33″E, sea sand, Jan 2021, M.S. Park & Y.W. Lim (SFC20230103-M54, stored in a metabolically inactive state).
This strain grows slower and forms less flat colonies on PDA compared to the holotype colonies (70 mm diam, flat) of C. proteacearum (
Republic of Korea, Incheon, Ganghwa-gun, 37°36′37″N, 126°31′24″E, mudflat, 12 Jun 2019, M.S. Park & Y.W. Lim (holotype: SFC20230103-M65, stored in a metabolically inactive state).
The epithet ‘snafimbriatum’, derived from Latin, refers to the fimbriate margin that appears on the SNA medium.
Asexual morphology: Mycelium immersed, composed of septate, branched, hyaline to subhyaline, verruculose hyphae, nodulose, 3–7.8 μm wide. Conidiophores macronematous and micronematous, arising laterally or terminally from hyphae, sometimes reduced to conidiogenous cells, septate, solitary, erect or somewhat flexuous, non-nodulose, sometimes slightly geniculate, usually unbranched, up to 294 μm long, 2.7–4.2 μm wide, pale brown, verruculose to verrucose. Conidiogenous cells integrated, terminal or intercalary, cylindrical, 9.6–48 × 2.1–4.8 μm, bearing up to four slightly darkened and refractive conidiogenous loci. Ramoconidia 0–2(−3)-septate, subcylindrical, somewhat slightly clavate, 13.3–39.7 × 2.7–4.5 μm [av. (± SD) 22.5 (± 6.32) × 3.5 (± 0.43)], pale brown, verruculose to verrucose. Conidia solitary or forming branched chains, with up to five conidia in the terminal unbranched part, sometimes long and thickened neck between conidia, 0(−1) septate, pale brown, verruculose to verrucose, with protuberant, slightly darkened, and refractive hila. Small terminal conidia 0(−1) septate, ellipsoidal to subcylindrical, clavate, 4.7–8.3 × 2.9–4.5 μm [av. (± SD) 6.1 (± 0.81) × 3.5 (± 0.35)]. Intercalary conidia 0–1(−2) septate, ellipsoidal to subcylindrical, limoniform, clavate, sometimes obclavate, 6.5–14.4 × 2.7–3.9 μm [av. (± SD) 8.5 (± 1.82) × 3.3 (± 0.28)]. Secondary ramoconidia 0–2(−3)-septate, subcylindrical to cylindrical, 12.5–29.9 × 2.9–4.2 μm [av. (± SD) 18.8 (± 3.86) × 3.5 (± 0.34)].
Cultural characters : Colonies on PDA 47–52 mm diam after 14 d at 25 °C, grayish green (30B3) to deep green (30E3), reverse dark gray (1F1), umbonate with slightly elevated central colony, velvety, radially furrowed, wrinkled at the center, sometimes frequently wrinkled on the entire colony; margin undulated, white edge; aerial mycelia moderate, without prominent exudates, sporulation profuse. Colonies on MEA 40–48 mm diam after 14 d at 25 °C, greenish gray (29B2) to grayish green (30C3), reverse dull green (30D3) to dark green (30F3), slightly raised colony, velvety; margin undulated, white edge, sometimes hyaline, radially furrowed, wrinkled; aerial mycelia abundantly formed, dense, somewhat irregular, without prominent exudates, sporulation profuse. Colonies on OA 35–38 mm diam after 14 d at 25 °C, deep green (30E8), reverse concolorous, powdery, slightly floccose, flat; margin yellowish, regular; aerial mycelia sparsely formed in the center, regular, without prominent exudates, sporulation profuse. Colonies on SNA 25–30 mm diam after 14 d at 25 °C, deep green (30E8) to dark green (30F8), reverse concolorous to dark gray (1F8), powdery, slightly floccose in the center, flat; margin olive (2E8 to 2F8), fimbriate; aerial mycelia sparsely to dense, irregular, without prominent exudates, sporulation profuse.
Isolated from mudflats; Western Korean seaside in Republic of Korea.
Republic of Korea, Incheon, Ganghwa-gun, 37°36′36″N, 126°31′13″E, mudflat, 12 Jun 2019, M.S. Park & Y.W. Lim (SFC20230103-M63, stored in a metabolically inactive state); Incheon, Ganghwa-gun, 37°36′36″N, 126°31′13″E, mudflat, 12 Jun 2019, M.S. Park & Y.W. Lim (SFC20230103-M64, stored in a metabolically inactive state).
This species has a distinguishing characteristic of forming a fimbriate margin on the SNA medium. Cladosporium snafimbriatum is phylogenetically distant with identities of 94.87% for act and 90.73% for tef1, compared to C. allicinum (CBS 121624) (
The Cladosporium strains were isolated from three types of marine habitats, namely seawater, seaweed, and sediment, from two districts (Table
Sites and habitats where Cladosporium species were isolated. In the site column, Western Korea, Southern Korea, Eastern Korea, and Western Pacific are represented by the acronym WK, SK, EK, and WP, respectively. “o” indicates that the species was isolated at the corresponding site or the habitat. The new species are in bold.
Species complex | Species | Site | Habitat | |||||
---|---|---|---|---|---|---|---|---|
WK | SK | EK | WP | Seaweed | Sediment | Seawater | ||
C. cladosporioides | C. lagenariiforme | o | o | |||||
C. maltirimosum | o | o | o | o | o | |||
C. marinum | o | o | o | o | ||||
C. perangustum | o | o | o | o | ||||
C. proteacearum | o | o | o | o | o | |||
C. rectoides | o | o | o | o | o | |||
C. tenuissimum | o | o | o | o | ||||
C. xanthochromaticum | o | o | ||||||
C. xylophilum | o | o | o | |||||
C. herbarum | C. allicinum | o | o | |||||
C. snafimbriatum | o | o | ||||||
C. sphaerospermum | C. halotolerans | o | o | o | o | o | o | o |
C. maresedimentum | o | o | o | |||||
C. velox | o | o |
Cladosporium is a cosmopolitan genus, and several of its species are found in various marine environments. We isolated Cladosporium strains from three different habitats in the intertidal zone in the Republic of Korea and in the open sea in the Western Pacific. Fourteen Cladosporium species (88 strains) were identified based on the analyses of ITS, act, and tef1 marker sequences. Five species (C. lagenariiforme, C. maltirimosum, C. marinisedimentum, C. marinum, and C. snafimbriatum) are being reported for the first time. The diversity of Cladosporium in marine environments is much higher than previously reported (
The topology of the phylogenetic tree generated for Cladosporium s. str. was analogous to that for Cladosporium in previous taxonomic studies (
The environmental conditions in the two districts (the intertidal zone in the Republic of Korea and the open sea in the Western Pacific) are distinct. The Western Pacific deep sea, where C. halotolerans and C. marinisedimentum sp. nov. were isolated (Table
In contrast, the intertidal zones are relatively warmer and under lower pressures. Various Cladosporium species inhabit seaweeds and sediments in the intertidal zones. Eight species (C. halotolerans, C. lagenariiforme sp. nov., C. maltirimosum sp. nov., C. marinum sp. nov., C. perangustum, C. proteacearum, C. rectoides, and C. tenuissimum) were isolated from seaweeds in this study, and many studies have verified that Cladosporium degrades seaweeds (
In sediments in the intertidal zone, where we found all species except C. lagenariiforme sp. nov., we found the most diversified Cladosporium species (C. allicinum, C. halotolerans, C. maltirimosum sp. nov., C. marinisedimentum sp. nov., C. marinum sp. nov., C. perangustum, C. proteacearum, C. rectoides, C. snafimbriatum sp. nov., C. tenuissimum, C. velox, C. xanthochromaticum, and C. xylophilum). Sediments in intertidal zone are rich in various nutrients through inputs from terrestrial environments and open sea, which may provide abundant nutrients for fungal survival or growth (
The diversity of Cladosporium species needs to be studied because Cladosporium has frequently been detected in marine environments (
We would like to thank Editage (www.editage.co.kr) for English language editing. We greatly appreciate Dr. Bensch for her advice on the new species names and KIOST members for sampling the precious samples from the Western Pacific.
The authors have declared that no competing interests exist.
No ethical statement was reported.
This work was supported by the management of Marine Fishery Bio-resources Center (2023), funded by the National Marine Biodiversity Institute of Korea (MABIK). This research was supported by the High Seas BioResource Program of the Korea Institute of Marine Science & Technology Promotion (KIMST) funded by the Ministry of Oceans and Fisheries (KIMST_20210646).
Conceptualization: YWL, WL, JSK. Data curation: WL, CWS. Formal analysis: WL, JSK. Funding acquisition: YWL. Investigation: WL, JSK, SHK, YWL. Methodology: CWS. Project administration: JWL. Resources: SHK, YWL, JSK, WL, JWL. Software: CWS. Supervision: YWL, JSK. Validation: YC, CWS, JSK, WL, JWL. Visualization: WL. Writing - original draft: CWS, YC, JSK, WL, YWL, JWL. Writing - review and editing: YC, WL, YWL, CWS, JSK.
Wonjun Lee https://orcid.org/0000-0002-7227-0777
Ji Seon Kim https://orcid.org/0000-0003-1869-7347
Chang Wan Seo https://orcid.org/0000-0002-5948-1836
Jun Won Lee https://orcid.org/0000-0003-1416-3428
Sung Hyun Kim https://orcid.org/0000-0002-5505-9451
Yoonhee Cho https://orcid.org/0000-0002-0743-0914
Young Woon Lim https://orcid.org/0000-0003-2864-3449
All of the data that support the findings of this study are available in the main text or Supplementary Information.
Strains of Cladosporium isolated in this study with detailed information on habitats and regions and GenBank accession numbers
Data type: tables (Excel file)