Research Article |
Corresponding author: Fang Liu ( liufang@im.ac.cn ) Academic editor: Huzefa Raja
© 2023 Shuang Song, Meng Li, Jun-En Huang, Fang Liu.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Song S, Li M, Huang J-E, Liu F (2023) Two new species of Scolecobasidium (Venturiales, Sympoventuriaceae) associated with true mangrove plants and S. terrestre comb. nov. MycoKeys 96: 113-126. https://doi.org/10.3897/mycokeys.96.100621
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Scolecobasidium is cosmopolitan and includes species that inhabit a wide range of ecosystems including soil, water, air, plant and cold-blooded vertebrates. During a fungal survey from mangrove, strains of Scolecobasidium occurring on leaf spots of true mangrove plants, Aegiceras corniculatum and Acanthus ebracteatus, were isolated from Futian Mangrove in Shenzhen and the Qi’ao-Dangan Island Mangrove in Zhuhai, China. Unlike most species in Scolecobasidium that produce dark conidia, our strains are characterized by hyaline to pale brown conidia and inconspicuous thread-like sterigmata. Further detailed morphological comparison and multi-locus (LSU, ITS, tub2, tef1-α) phylogenetic analyses revealed these collections as two new taxa, namely S. acanthi sp. nov. and S. aegiceratis sp. nov. We further emend the generic description of Scolecobasidium, propose one new combination, S. terrestre comb. nov., and clarify the taxonomic status of S. constrictum.
Mangrove, phylogeny, plant pathogen, taxonomy
Scolecobasidium was described based on two species, S. terreum and S. constrictum, with the former as the generic type (
Scolecobasidium is the largest genus within Sympoventuriaceae, Venturiales, Dothideomycetes (
During our fungal investigations on mangrove plants in China, 90 strains of 48 species have been isolated from true mangrove plants, Acanthus ebracteatus and Aegiceras corniculatum (Table
Pathogens and endophytes associated with true mangrove plant Acanthus ebracteatus and Aegiceras corniculatum.
Strains No. | Fungus species | Host plant | Remark |
---|---|---|---|
SS1 | Acrocalymma medicaginis | Ac. ebracteatus | Pathogen |
ds0003, SS2012, SS2094, SS2108, SS2009, SS2017, SS2096, SS2103 | Alternaria angustiovoidea | Ac. ebracteatus | Endophyte |
SS2047 | Arthrinium xenocordella | Ae. corniculatum | Endophyte |
ds0016 | Cercospora beticola | Ae. corniculatum | Endophyte |
SS2097, SS27 | Cladosporium austrohemisphaericum | Ae. corniculatum | Endophyte |
ds1001, ds1030, SS10 | Cladosporium cladosporioides | Ae. corniculatum | Pathogen |
SS2010 | Cladosporium colombiae | Ae. corniculatum | Endophyte |
ds0017, ds1043, ds1032, ds1042 | Cladosporium dominicanum | Ae. corniculatum | Endophyte |
SS8, SS42 | Cladosporium oryzae | Ac. ebracteatus | Pathogen |
SS2110 | Cladosporium rugulovarians | Ae. corniculatum | Endophyte |
ds1038-2 | Cladosporium sphaerospermum | Ae. corniculatum | Pathogen |
SS28 | Cladosporium tenuissimum | Ac. ebracteatus | Pathogen |
ds0011 | Colletotrichum gigasporum complex | Ac. ebracteatus | Endophyte |
SS2109, SS2046 | Cytospora sp. nov. | Ae. corniculatum | Endophyte |
SS2107 | Diaporthe hongkongensis | Ae. corniculatum | Endophyte |
SS2041 | Diaporthe perseae | Ae. corniculatum | Endophyte |
ds1038, SS2106 | Fusarium incarnatum | Ae. corniculatum | Pathogen |
ds1018 | Fusarium luffae | Ae. corniculatum | Pathogen |
SS14 | Fusarium solani | Ae. corniculatum | Pathogen |
ds1045 | Halorosellinia sp. nov. | Ae. corniculatum | Pathogen |
ds0021, ds0022 | Halorosellinia xylocarpi | Ac. ebracteatus | Endophyte |
ds1093, ds1094, ds1095 | Hortaea werneckii | Ae. corniculatum | Pathogen |
ds1044 | Hypocreales sp. nov. | Ae. corniculatum | Pathogen |
SS29 | Nemania sp. nov. | Ae. corniculatum | Endophyte |
ds1087 | Neodevriesia tabebuiae | Ae. corniculatum | Pathogen |
SS2015, SS2045, SS2100, ds1062, ds1075 | Neofusicoccum kwambonambiense | Ae. corniculatum | Endophyte |
ds1060 | Neopestalotiopsis eucalypticola | Ae. corniculatum | Pathogen |
ds1020 | Neopestalotiopsis phangngaensis | Ae. corniculatum | Pathogen |
ds1061 | Neopestalotiopsis sp. nov. | Ae. corniculatum | Pathogen |
SS2092 | Nigrospora oryzae | Ae. corniculatum | Endophyte |
ds1025 | Occultifur sp. nov. | Ac. ebracteatus | Pathogen |
SS2069, SS2038, SS2067, SS2068 | Penicillium brevicompactum | Ac. ebracteatus | Endophyte |
SS2051, SS2048, SS2052, SS2056, SS2058, SS2066, SS2077, SS2081, SS2083 | Penicillium chrysogenum | Ae. corniculatum | Endophyte |
SS2087 | Penicillium coffeae | Ae. corniculatum | Endophyte |
ds1019 | Pestalotiopsis kandelicola | Ae. corniculatum | Pathogen |
SS2011 | Phyllosticta capitalensis | Ac. ebracteatus | Endophyte |
ds1081 | Phyllosticta sp. nov. | Ae. corniculatum | Pathogen |
SS20 | Pseudopestalotiopsis chinensis | Ae. corniculatum | Pathogen |
ds1028 | Rhodotorula sphaerocarpa | Ac. ebracteatus | Pathogen |
ds1031 | Roussoella mediterranea | Ae. corniculatum | Pathogen |
LC19368 | Scolecobasidium acanthi sp. nov. | Ac. ebracteatus | Pathogen |
LC19369, LC19370 | Scolecobasidium aegiceratis sp. nov. | Ae. corniculatum | Pathogen |
SS2089 | Stemphylium solani | Ae. corniculatum | Endophyte |
ds1100 | Symmetrospora marina | Ae. corniculatum | Pathogen |
ds1084 | Thyridium pluriloculosum | Ae. corniculatum | Pathogen |
SS2044 | Tricharina ochroleuca | Ac. ebracteatus | Endophyte |
SS2040, SS2043 | Trichoderma harzianum | Ae. corniculatum | Endophyte |
ds1086, ds1026, ds1027, ds1079, ds1082, ds1026-2, ds1037 | Zasmidium anthuriicola | Ae. corniculatum | Pathogen |
Colony features including color and growth rate were recorded for the strains grown on oatmeal agar (OA) and malt extract agar (MEA) after 14 days at 25 °C. To enhance sporulation, strains were incubated at 25 °C under near UV light with a 12 h photoperiod for 14 d or longer period. Morphological observations of reproductive structures were made in lactic acid and observed using a Nikon Eclipse 80i microscope using differential interference contrast (DIC) illumination. At least 30 measurements per structure were taken, and the mean value, standard deviation, and minimum–maximum values were given.
Fresh fungal mycelia grown on potato dextrose agar (PDA) for 14 d at 25 °C were scraped from the colony margin and used for genomic DNA extraction using a modified CTAB protocol as described previously (
Phylogenetic analysis was performed using sequences of LSU, ITS, tub2, and tef1-α from 64 type and reference strains of Ochroconis, Scolecobasidium and one outgroup Verruconis calidifluminalis CBS 125818 (Table
Strains used in the phylogenetic analysis of Scolecobasidium and GenBank accession numbers.
Species | Straina | Genbank accession numbersb | |||
---|---|---|---|---|---|
ITS | LSU | tub2 | tef1 | ||
acanthi |
|
OQ448957 | OQ448949 | OQ442218 | OQ442215 |
S. aegiceratis |
|
OQ448958 | OQ448950 | OQ442219 | OQ442216 |
S. aegiceratis |
|
OQ448959 | OQ448951 | OQ442220 | OQ442217 |
S. ailanthi | MFLU 18-2110 | MK347731 | ‒ | MK412881 | ‒ |
S. ailanthi | MFLUCC 17-0923T | MK347730 | MK347947 | MK412883 | – |
S. anellii | CBS 284.64T | FR832477 | KF156138 | KF156184 | KF155995 |
S. anomalum | CBS 131816T | HE575201 | KF156137 | KF156194 | KF155986 |
S. aquaticum | CBS 140316T | KX668258 | KX668259 | – | – |
S. bacilliforme | CBS 100442T | KP798632 | KP798635 | KT272059 | KT272070 |
S. blechni | CBS 146055T | MN562134 | MN567641 | MN556843 | MN556826 |
S. camellicola | GUCC 18242T | MZ503728 | MZ503761 | MZ546907 | MZ546874 |
S. capsici | CBS 142096T | KY173427 | KY173518 | – | – |
S. constrictum | CBS 202.27T | MH854929 | MH866423 | KF156161 | KF156003 |
S. cordanae | CBS 412.51 | HQ667540 | KF156123 | KF156200 | KF155980 |
S. cordanae | CBS 475.80T | KF156022 | KF156122 | KF156197 | KF155981 |
S. crassihumicola | CBS 120700 | KJ867429 | KJ867430 | KJ867433 | KJ867428 |
S. dracaenae | CBS 141323T | KX228283 | KX228334 | – | KX228377 |
S. echinulatum | GUCC 18247T | MZ503733 | MZ503766 | MZ546912 | MZ546879 |
S. echinulatum | GUCC 18248 | MZ503734 | MZ503767 | MZ546913 | MZ546880 |
S. ellipsoideum | CBS 131796T | MN077367 | – | – | – |
S. ellipsoideum | GUCC 18264 | MZ503750 | MZ503783 | MZ546929 | MZ546896 |
S. ferulica | IRAN3232CT | MF186874 | MH400207 | – | – |
S. gamsii | CBS 239.78T | KF156019 | KF156150 | KF156190 | KF155982 |
S. globale | CBS 119644T | KF961086 | KF961097 | KF961065 | KF961075 |
S. globale | CBS 135924 | KF961092 | KF961104 | KF961070 | KF961079 |
S. guangxiensis | SS23T | MK934570 | MK956169 | – | – |
S. guangxiensis | X22 | MK961215 | MK961247 | – | – |
S. helicteris | NFCCI 4310T | MK014833 | – | MK321318 | – |
S. humicola | CBS 116655T | HQ667521 | KF156124 | KF156195 | KF155984 |
S. icarus | CBS 116645 | HQ667525 | – | LM644604 | ‒ |
S. icarus | CBS 536.69T | HQ667524 | KF156132 | KF156174 | KF156009 |
S. lascauxense | CBS 131815T | FR832474 | KF156136 | KF156183 | KF155994 |
S. lascauxense | CBS 423.64 | HQ667523 | KF156131 | KF156173 | KF156008 |
S. leishanicola | GUCC 18259 | MZ503745 | MZ503778 | MZ546924 | MZ546891 |
S. leishanicola | HGUP1808T | MK377301 | MK377073 | – | – |
S. longiphorum | CBS 435.76T | KF156038 | KF156135 | KF156182 | KF155978 |
S. macrozamiae | CBS 137971T | KJ869123 | KJ869180 | – | – |
S. minimum | CBS 510.71T | HQ667522 | KF156134 | KF156172 | KF156007 |
S. mirabilis | CBS 413.51T | HQ667536 | KF156140 | KF156164 | KF156001 |
S. musae | CBS 729.95T | KF156029 | KF156144 | KF156171 | KF155999 |
S. musicola | CBS 144441T | MH327824 | MH327860 | MH327898 | MH327887 |
S. musicola | CPC 37308 | MW063428 | – | MW071116 | MW071096 |
S. musicola | CPC 37309 | MW063429 | – | MW071117 | MW071097 |
S. obovoideum | GUCC 18246T | MZ503732 | MZ503765 | MZ546911 | MZ546878 |
S. olivaceum | CBS 137170T | LM644521 | LM644564 | LM644605 | KT272067 |
S. pandanicola | CBS 140660T | KT950850 | KT950864 | – | – |
S. phaeophorum | CBS 206.96T | KP798631 | KP798634 | KT272062 | KT272098 |
S. podocarpi | CBS 143174T | MG386032 | MG386085 | – | – |
S. podocarpicola | CBS 146057T | MN562138 | MN567645 | – | – |
S. ramosum | CBS 137171 | LM644522 | LM644565 | LM644606 | KT272068 |
S. ramosum | CBS 137173T | LM644524 | LM644567 | MZ546928 | KT272069 |
S. robustum | CBS 112.97T | KP798633 | KP798636 | KT272060 | KT272071 |
S. sexuale | CBS 131965 | KF156017 | KF156119 | KF156188 | KF155977 |
S. sexuale | CBS 135765T | KF156018 | KF156118 | KF156189 | KF155976 |
S. spiralihyphum | GUCC 18245T | MZ503731 | MZ503764 | MZ546910 | MZ546877 |
S. terrestre | CBS 211.53T | NR_145365 | NG_058014 | KF156187 | KF156005 |
S. terreum | CBS 203.27T | HQ667544 | – | HQ877665 | – |
S. tshawytschae | CBS 100438T | HQ667562 | KF156126 | KF156180 | KF155990 |
S. tshawytschae | CBS 228.66 | KF156016 | KF156128 | KF156179 | KF155992 |
S. variabile | NBRC 32268 | DQ307334 | EU107310 | – | DQ307356 |
S. verrucaria | GUCC 18240T | MZ503726 | MZ503759 | MZ546905 | MZ546872 |
S. verrucosum | CBS 383.81T | KF156015 | KF156129 | KF156185 | KT272099 |
S. zunyiense | GUCC 18241T | MZ503727 | MZ503760 | MZ546906 | MZ546873 |
V. calidifluminalis | CBS 125818T | AB385698 | KF156108 | KF156202 | KF155959 |
The BLAST searches in the NCBI’s GenBank nucleotide database using ITS sequences of LC19368, LC19369 and LC19370 showed their closest similarities to Scolecobasidium spp. In the following multi-locus phylogenetic analysis of Scolecobasidium, the dataset comprised 2,932 characters including alignment gaps (LSU: 855 bp, ITS: 818 bp, tub2: 542 bp, tef1-α: 717 bp). The ML search revealed a best tree with an InL of -34731.383727. For the Bayesian inference, a GTR+I+G model was selected for ITS, LSU, tef1-α and tub2. The BA was run for 1,535,000 generations, and a 50% consensus tree and posterior probabilities were calculated from 2,304 trees from two runs. The topologies of phylogenetic trees generated by ML and BA were congruent. Our strains were separated into two distinct clades from all known species of Scolecobasidium (Fig.
Phylogenetic tree of Scolecobasidium calculated with a maximum likelihood analysis of the combined ITS, LSU, tef1-α, and tub2 sequences alignment. The tree was rooted with Verruconis calidifluminalis (CBS 125818). Bootstrap values (ML > 50%) and Bayesian posterior probabilities (PP > 0.90) are shown at the nodes in the order of ML/PP. T indicates ex-type strains. The novel taxa and new combination are showed in bold. The scale bar represents the expected changes per site.
Ochroconis de Hoog & Arx, Kavaka 1: 57. 1974 [1973]. Synonym.
Colonies
restricted, slow-growing, brown or olivaceous. Aerial hyphae smooth- or somewhat rough-walled, pigmented. Cleistothecia up to 40 μm in diam, dark brown; peridium wall composed of textura angularis. Ascomata bearing antler-shaped appendages, with serrate edges. Asci bitunicate, clavate, 8-spored; ascospores pale brown, verruculose, 1–3-septate. Conidiophores reduced, unbranched or sparingly branched, arising from the aerial hyphae or hyphal ropes, continuous or septate, hyaline or pigmented, ovoid, clavate, wedge-shaped, cylindrical, or irregular. Conidiogenous cells scattered, monoblastic or sympodial, elongate to cylindrical. Conidia produced in clusters or acropetal series from the ends of tubular extensions of the conidiophores; conidia 1–4-celled, pigmented or hyaline, smooth or verrucose, ellipsoidal, ovoid, cylindrical, or T- or Y-shaped. (emended from
Scolecobasidium terreum E.V. Abbott.
Named after the host plant Acanthus from which this fungus was isolated.
China. Guangdong Province: Qi’ao-Dangan Island Provincial Nature Reserve, from leaf of Acanthus ebracteatus, Nov 2019, M. Li, Z.F. Zhang and J.E. Huang (Holotype HMAS 352373, culture ex-type
Sexual morph : unknown. Asexual morph: Mycelium consisting of branched, septate, hyaline to pale brown, smooth, and thick-walled hyphae. Conidiophores solitary, erect, brown, smooth, arising from superficial hyphae, subcylindrical, straight to geniculous, brown, thick-walled, 0(–2)-septate, 14.5–20.5 × 1.5–2 µm, often reduced to conidiogenous cells, bearing a few conidia near the apex. Conidiogenous cells brown, smooth, 4.5–9.5 × 1.5–2 µm, terminal and lateral on conidiophores, containing several apical, cylindrical denticles. Conidia 1-septate, smooth-walled, subhyaline to pale brown, cylindrical, rarely pyriform, constricted at the septum, 5.5–8.5 × 2.5–4 µm (av. ± SD = 6.9 ± 0.7 × 3.05 ± 0.2 µm, n = 42).
Colonies reaching up to 16–20 mm diam after 14 days at 25 °C, producing dense aerial mycelium on MEA and OA. On MEA, surface wheat to greyish brown, reverse saddlebrown, felty, dry, margins smooth. On OA, surface burlywood to peru, reverse brown black, margins smooth.
Scolecobasidium acanthi (ex-type
Although represented by single strain, S. acanthi sp. nov. formed a distinct clade (Fig.
Named after the host plant Aegiceras from which this fungus was isolated.
China. Guangdong Province: Futian Mangrove National Nature Reserve, from leaf of Aegiceras corniculatum, July 2020, Z.F. Zhang (Holotype HMAS 352374, culture ex-type
China. Guangdong Province: Futian Mangrove National Nature Reserve, from leaf of Aegiceras corniculatum, July 2020, Z.F. Zhang (Holotype HMAS 352375, culture ex-type
Sexual morph : unknown. Asexual morph: Mycelium consisting of branched, septate, hyaline to pale brown, smooth, and thick-walled hyphae. Conidiophores arising from the aerial hyphae or hyphal ropes, continuous or septate, usually reduced to conidiogenous cells, 0(–1)-septate. Conidiogenous cells solitary, hyaline to pale brown, smooth, subcylindrical, straight to geniculous-sinuous, thick-walled, 7.5–24 × 1.5–2.5 µm, bearing a few conidia near the apex. Conidia smooth-walled, subhyaline to pale brown, ellipsoidal or cylindrical, tapering torwards the base, mostly 1-septate, rarely 2–3-septate, sometimes constricted at the septum, 8–15(–26.5) × 2.5–3.5(–6.5) µm (av. ± SD = 9.3 ± 1.16 × 2.83 ± 0.26 µm, n = 40).
Colonies reaching up to 20–22 mm diam after 14 days at 25 °C, dense aerial mycelium on MEA and OA. On MEA, smooth to felty, dry, surface greyish brown to dark brown, reverse saddle brown. On OA, surface ivory to peru, reverse brown black.
Scolecobasidium aegiceratis is phylogenetically related to S. dracaenae (Fig.
≡ Ochroconis constricta (E.V. Abbott) de Hoog & Arx, Kavaka 1: 57. 1974.
≡ Dactylaria constricta (E.V. Abbott) D.M. Dixon & Salkin, J. Clin. Microbiol. 24: 13. 1986.
USA Louisiana, from soil, 1927, E.V. Abbott ex-type culture CBS 202.27 = MUCL 9471 (metabolically inactive).
Scolecobasidium constrictum was introduced at the same time as the generic type of Scolecobasidium, S. terreum, by
With the help of molecular analyses,
In addition, the type strain of S. constrictum should be CBS 202.27, rather than CBS 211.53, which was incorrectly listed in tables 2, 3 and figs 1, 2 in
≡ Heterosporium terrestre R.G. Atk., Mycologia 44: 813. 1952.
Canada. Ontario: Ancaster, obtained from soil obtained, isolated by R.G. Atkinson, 31 Oct. 1947, holotype DAOM 28282, ex-type culture CBS 211.53 (= ATCC 11419; DAOM 28282; IMI 051380; MUCL 9896).
See the notes under S. constrictum.
Zhifeng Zhang is thanked for his help in sample collection. This work was supported by Science & Technology Fundamental Resources Investigation Program (Grant No. 2019FY100700), and the Youth Innovation Promotion Association of Chinese Academy of Sciences (2021085).