Treena I. Burgess, Diane White, Sarah J. Sapsford (2022)
Comparison of Primers for the Detection of Phytophthora (and Other Oomycetes) from Environmental Samples.
Journal of Fungi8: 980.
DOI: 10.3390/jof8090980
Avid Azadnia, Vladimir Mikryukov, Sten Anslan, Niloufar Hagh-Doust, Saleh Rahimlou, Heidi Tamm, Leho Tedersoo (2023)
Structure of plant–associated microeukaryotes in roots and leaves of aquatic and terrestrial plants revealed by blocking peptide-nucleic acid (PNA) amplification.
FEMS Microbiology Ecology99: .
DOI: 10.1093/femsec/fiad152
T. L. Pitman, R. N. Philbrook, M. R. Vetterli, J. G. Warren (2021)
First Report of Pythium ultimum Causing Crown Rot in Greenhouse-Grown Cannabis sativa in California.
Plant Disease105: 1230.
DOI: 10.1094/PDIS-10-20-2228-PDN
Darta Klavina, Leho Tedersoo, Ahto Agan, Astra Zaluma, Kriss Bitenieks, Kaspars Polmanis, Mudrite Daugaviete, Talis Gaitnieks, Rein Drenkhan (2023)
Effect of stand thinning, former land use and individual tree parameters on wood inhabiting fungal community composition in young living Norway spruce.
Fungal Ecology65: 101281.
DOI: 10.1016/j.funeco.2023.101281
Sten Anslan, Mohammad Bahram, Indrek Hiiesalu, Leho Tedersoo (2017)
PipeCraft: Flexible open‐source toolkit for bioinformatics analysis of custom high‐throughput amplicon sequencing data.
Molecular Ecology Resources17: .
DOI: 10.1111/1755-0998.12692
Micol Guaschino, Marco Garello, Luca Nari, Yeka V. Zhimo, Samir Droby, Davide Spadaro (2024)
Soil, rhizosphere, and root microbiome in kiwifruit vine decline, an emerging multifactorial disease.
Frontiers in Microbiology15: .
DOI: 10.3389/fmicb.2024.1330865
Svetlana Markovskaja, Reda Iršėnaitė, Audrius Kačergius, Gintarė Sauliutė, Milda Stankevičiūtė (2024)
Diversity of fungus‐like stramenopilous organisms (Oomycota) in Lithuanian freshwater aquaculture: Morphological and molecular analysis, risk to fish health.
Journal of Fish Diseases47: .
DOI: 10.1111/jfd.13903
Tomasz Kulik, Katarzyna Bilska, Maciej Żelechowski (2020)
Promising Perspectives for Detection, Identification, and Quantification of Plant Pathogenic Fungi and Oomycetes through Targeting Mitochondrial DNA.
International Journal of Molecular Sciences21: 2645.
DOI: 10.3390/ijms21072645
Saveria Mosca, Meriem Miyassa Aci, Giuseppina Procopio, Vittoria Vadalà, Giuseppina Vizzari, Edda Francomano, Nesma Zakaria Mohamed, Maria Giulia Li Destri Nicosia, Giovanni Enrico Agosteo, Davide Spadaro, Leonardo Schena, Antonino Malacrinò (2024)
Integrated analyses of the plant and soil microbiome identify Phytopythium vexans as agent of the Kiwifruit Vine Decline Syndrome.
Plant and Soil
: .
DOI: 10.1007/s11104-024-06891-5
Angela L. Dale, Nicolas Feau, Jean A. Berube, Julien Ponchart, Guillaume J. Bilodeau, Richard C. Hamelin (2022)
Urban environments harbor greater oomycete and Phytophthora diversity, creating a bridgehead for potential new pathogens to natural ecosystems.
Environmental DNA4: 1039.
DOI: 10.1002/edn3.300
Eliana Dell’Olmo, Valerio Battaglia, Loredana Sigillo (2024)
First report of Globisporangium perplexum (syn: Pythium perplexum) causing wilting and crown rot on cauliflower (Brassica oleracea var. botrytis).
Journal of Plant Diseases and Protection131: 243.
DOI: 10.1007/s41348-023-00811-y
J Groffen, SY Oh, S Kwon, Y Jang, A Borzée (2019)
High mortality in Bufo gargarizans eggs associated with an undescribed Saprolegnia ferax strain in the Republic of Korea.
Diseases of Aquatic Organisms137: 89.
DOI: 10.3354/dao03434
Witoon Purahong, Benjawan Tanunchai, Sara Fareed Mohamed Wahdan, François Buscot, Ernst-Detlef Schulze (2021)
Molecular Screening of Microorganisms Associated with Discolored Wood in Dead European Beech Trees Suffered from Extreme Drought Event Using Next Generation Sequencing.
Plants10: 2092.
DOI: 10.3390/plants10102092
Clayton A. Rushford, Rebecca L. North, Gerald L. Miller (2022)
Detection of Pythium spp. in Golf Course Irrigation Systems.
Plant Disease106: 46.
DOI: 10.1094/PDIS-02-21-0399-RE
Taavi Riit, Leho Tedersoo, Rein Drenkhan, Eve Runno-Paurson, Harri Kokko, Sten Anslan (2018)
Corrigendum for: “Oomycete-specific ITS primers for identification and metabarcoding” published in MycoKeys, doi: 10.3897/mycokeys.14.9244.
MycoKeys41: 119.
DOI: 10.3897/mycokeys.41.30558
Giovanni Mian, Guido Cipriani, Giuseppe Firrao, Marta Martini, Paolo Ermacora (2023)
Genetic diversity of Actinidia spp. shapes the oomycete pattern associated with Kiwifruit Vine Decline Syndrome (KVDS).
Scientific Reports13: .
DOI: 10.1038/s41598-023-43754-y
Gintarė Sauliutė, Tomas Makaras, Janina Pažusienė, Roberta Valskienė, Agnė Bučaitė, Arvydas Markuckas, Svetlana Markovskaja, Milda Stankevičiūtė (2023)
A comparative analysis of multi-biomarker responses to environmental stress: Evaluating differences in landfill leachate and pathogenic oomycete effects between wild and captive Salmo trutta.
Science of The Total Environment897: 165420.
DOI: 10.1016/j.scitotenv.2023.165420
Bora Nam, Hyo Jung Lee, Young-Joon Choi (2023)
Organic Farming Allows Balanced Fungal and Oomycetes Communities.
Microorganisms11: 1307.
DOI: 10.3390/microorganisms11051307
Zachary S. L. Foster, Felipe E. Albornoz, Valerie J. Fieland, Meredith M. Larsen, F. Andrew Jones, Brett M. Tyler, Hai D. T. Nguyen, Treena I. Burgess, Carolyn Riddell, Hermann Voglmayr, Frank N. Martin, Niklaus J. Grünwald (2022)
A New Oomycete Metabarcoding Method Using the rps10 Gene.
Phytobiomes Journal6: 214.
DOI: 10.1094/PBIOMES-02-22-0009-R
Jonathan J. James, Elizabeth M. Bach, Kaleb Baker, Nicholas A. Barber, Ryan Buck, Maryam Shahrtash, Shawn P. Brown (2022)
Herbicide control of the invasive Amur honeysuckle (Lonicera maackii) does not alter soil microbial communities or activity.
Ecological Solutions and Evidence3: .
DOI: 10.1002/2688-8319.12157
Bunlong Yim, Heike Nitt, Andreas Wrede, Samuel Jacquiod, Søren J. Sørensen, Traud Winkelmann, Kornelia Smalla (2017)
Effects of Soil Pre-Treatment with Basamid® Granules, Brassica juncea, Raphanus sativus, and Tagetes patula on Bacterial and Fungal Communities at Two Apple Replant Disease Sites.
Frontiers in Microbiology8: .
DOI: 10.3389/fmicb.2017.01604
Leho Tedersoo, Ave Tooming‐Klunderud, Sten Anslan (2018)
PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives.
New Phytologist217: 1370.
DOI: 10.1111/nph.14776
Liina Soonvald, Kaire Loit, Eve Runno-Paurson, Alar Astover, Leho Tedersoo (2020)
Characterising the effect of crop species and fertilisation treatment on root fungal communities.
Scientific Reports10: .
DOI: 10.1038/s41598-020-74952-7
L. Hamberg, A. Poimala, S. Velmala, J. Perttunen, R. Muilu‐Mäkelä, R. Sievänen, V. Pastor (2021)
Root discoloration and shoot symptoms in silver birch afterPhytophthorainfectionin vitro.
Plant Biology23: 162.
DOI: 10.1111/plb.13198
Guangzhou Wang, Haley M. Burrill, Laura Y. Podzikowski, Maarten B. Eppinga, Fusuo Zhang, Junling Zhang, Peggy A. Schultz, James D. Bever (2023)
Dilution of specialist pathogens drives productivity benefits from diversity in plant mixtures.
Nature Communications14: .
DOI: 10.1038/s41467-023-44253-4
Wesley A. Bickford, Donald R. Zak, Kurt P. Kowalski, Deborah E. Goldberg (2020)
Differences in rhizosphere microbial communities between native and non‐native Phragmites australis may depend on stand density.
Ecology and Evolution10: 11739.
DOI: 10.1002/ece3.6811
Yuan Liu, Gary H. Wikfors, Paul Clark, Steven Pitchford, Melissa Krisak, Mark S. Dixon, Yaqin Li (2022)
A deep dive into the epibiotic communities on aquacultured sugar kelp Saccharina latissima in Southern New England.
Algal Research63: 102654.
DOI: 10.1016/j.algal.2022.102654
Martha A. Sudermann, Zachary S. L. Foster, Jeff H. Chang, Niklaus J. Grünwald (2024)
Metabarcoding for plant pathologists.
Canadian Journal of Plant Pathology46: 142.
DOI: 10.1080/07060661.2023.2290041
Anna Maria Fiore-Donno, Michael Bonkowski (2021)
Different community compositions between obligate and facultative oomycete plant parasites in a landscape-scale metabarcoding survey.
Biology and Fertility of Soils57: 245.
DOI: 10.1007/s00374-020-01519-z
Leho Tedersoo, Rein Drenkhan, Sten Anslan, Carmen Morales‐Rodriguez, Michelle Cleary (2019)
High‐throughput identification and diagnostics of pathogens and pests: Overview and practical recommendations.
Molecular Ecology Resources19: 47.
DOI: 10.1111/1755-0998.12959
Elisa Banchi, Claudio G. Ametrano, Enrico Tordoni, David Stanković, Silvia Ongaro, Mauro Tretiach, Alberto Pallavicini, Lucia Muggia, Pierluigi Verardo, Francesca Tassan, Nadia Trobiani, Olga Moretti, Maria Francesca Borney, Stefania Lazzarin (2020)
Environmental DNA assessment of airborne plant and fungal seasonal diversity.
Science of The Total Environment738: 140249.
DOI: 10.1016/j.scitotenv.2020.140249
Abdur R. Khan, Wisnu A. Wicaksono, Natalia J. Ott, Amisha T. Poret-Peterson, Greg T. Browne, Durgesh Kumar Jaiswal (2022)
Random forest analysis reveals taxa predictive of Prunus replant disease in peach root microbiomes.
PLOS ONE17: e0275587.
DOI: 10.1371/journal.pone.0275587
Abdur R. Khan, Wisnu A. Wicaksono, Natalia J. Ott, Amisha T. Poret-Peterson, Greg T. Browne, Rashid Nazir (2021)
Characterization of soils conducive and non-conducive to Prunus replant disease.
PLOS ONE16: e0260394.
DOI: 10.1371/journal.pone.0260394
Marissa Lee, Jeff R. Powell, Brad Oberle, Faride Unda, Shawn D. Mansfield, Rhiannon Dalrymple, Jessica Rigg, William K. Cornwell, Amy E. Zanne (2022)
Initial wood trait variation overwhelms endophyte community effects for explaining decay trajectories.
Functional Ecology36: 1243.
DOI: 10.1111/1365-2435.14025
Daniel C. Schlatter, Ian Burke, Timothy C. Paulitz (2018)
Succession of Fungal and Oomycete Communities in Glyphosate-Killed Wheat Roots.
Phytopathology®108: 582.
DOI: 10.1094/PHYTO-06-17-0212-R
Melanie Sapp, Nicolas Tyborski, Anja Linstädter, Aida López Sánchez, Tim Mansfeldt, Guido Waldhoff, Georg Bareth, Michael Bonkowski, Laura E. Rose (2019)
Site‐specific distribution of oak rhizosphere‐associated oomycetes revealed by cytochrome c oxidase subunit II metabarcoding.
Ecology and Evolution9: 10567.
DOI: 10.1002/ece3.5577
C.H. Lau, E.R. Snook, A.K. Swinford, L.K. Bryan (2020)
Achlya sp. Dermatitis in an American Alligator (Alligator mississippiensis).
Journal of Comparative Pathology175: 1.
DOI: 10.1016/j.jcpa.2019.12.002
Liina Soonvald, Kaire Loit, Eve Runno-Paurson, Alar Astover, Leho Tedersoo (2019)
The role of long-term mineral and organic fertilisation treatment in changing pathogen and symbiont community composition in soil.
Applied Soil Ecology141: 45.
DOI: 10.1016/j.apsoil.2019.05.003
Martina Lisnerová, Astrid Holzer, Petr Blabolil, Ivan Fiala (2023)
Evaluation and optimization of an eDNA metabarcoding assay for detection of freshwater myxozoan communities.
Environmental DNA5: 312.
DOI: 10.1002/edn3.380
Francesco Savian, Fabio Marroni, Paolo Ermacora, Giuseppe Firrao, Marta Martini (2022)
A Metabarcoding Approach to Investigate Fungal and Oomycete Communities Associated with Kiwifruit Vine Decline Syndrome in Italy.
Phytobiomes Journal6: 290.
DOI: 10.1094/PBIOMES-03-22-0019-R
Hossein Masigol, Pieter van West, Seyedeh Roksana Taheri, Juan-Miguel Fregeneda-Grandes, Lucian Pârvulescu, Debbie McLaggan, Tim Tobias Bliss, Reza Mostowfizadeh-Ghalamfarsa, Mohammad Javad Pourmoghaddam, Hans-Peter Grossart (2023)
Advancements, deficiencies, and future necessities of studying Saprolegniales: A semi-quantitative review of 1073 published papers.
Fungal Biology Reviews46: 100319.
DOI: 10.1016/j.fbr.2023.100319
Petr Kohout, Radka Sudová, Iñaki Odriozola, Jana Kvasničková, Markéta Petružálková, Věroslava Hadincová, František Krahulec, Sylvie Pecháčková, Hana Skálová, Tomáš Herben (2024)
Accumulation of pathogens in soil microbiome can explain long‐term fluctuations of legumes in a grassland community.
New Phytologist244: 235.
DOI: 10.1111/nph.20031
Camille S Delavaux, Josh L Schemanski, Geoffrey L House, Alice G Tipton, Benjamin Sikes, James D Bever (2021)
Root pathogen diversity and composition varies with climate in undisturbed grasslands, but less so in anthropogenically disturbed grasslands.
The ISME Journal15: 304.
DOI: 10.1038/s41396-020-00783-z
Leho Tedersoo, Sten Anslan (2019)
Towards PacBio‐based pan‐eukaryote metabarcoding using full‐length ITS sequences.
Environmental Microbiology Reports11: 659.
DOI: 10.1111/1758-2229.12776
Tracey S. Somera, Shiri Freilich, Mark Mazzola (2021)
Comprehensive analysis of the apple rhizobiome as influenced by different Brassica seed meals and rootstocks in the same soil/plant system.
Applied Soil Ecology157: 103766.
DOI: 10.1016/j.apsoil.2020.103766
Kaire Loit, Kalev Adamson, Mohammad Bahram, Rasmus Puusepp, Sten Anslan, Riinu Kiiker, Rein Drenkhan, Leho Tedersoo, Irina S. Druzhinina (2019)
Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens.
Applied and Environmental Microbiology85: .
DOI: 10.1128/AEM.01368-19
Neelam R. Redekar, Joyce L. Eberhart, Jennifer L. Parke (2019)
Diversity of Phytophthora, Pythium, and Phytopythium Species in Recycled Irrigation Water in a Container Nursery.
Phytobiomes Journal3: 31.
DOI: 10.1094/PBIOMES-10-18-0043-R
Enoch Narh Kudjordjie, Anne Saaby Schmidt-Høier, Mai-Britt Brøndum, Mads Grønvald Johnsen, Mogens Nicolaisen, Mette Vestergård, Jaime E. Blair (2024)
Early assessment of fungal and oomycete pathogens in greenhouse irrigation water using Oxford nanopore amplicon sequencing.
PLOS ONE19: e0300381.
DOI: 10.1371/journal.pone.0300381
Chantelle Hooper, Georgia M. Ward, Rachel Foster, Ilze Skujina, Joseph E. Ironside, Cédric Berney, David Bass (2023)
Long amplicons as a tool to identify variable regions of ribosomal RNA for improved taxonomic resolution and diagnostic assay design in microeukaryotes: using ascetosporea as a case study.
Frontiers in Ecology and Evolution11: .
DOI: 10.3389/fevo.2023.1266151
Taavi Riit, Michelle Cleary, Kalev Adamson, Mimmi Blomquist, Daiva Burokienė, Diana Marčiulynienė, Jonàs Oliva, Anna Poimala, Miguel Angel Redondo, Gunn Mari Strømeng, Venche Talgø, Leho Tedersoo, Iben Margrete Thomsen, Anne Uimari, Johanna Witzell, Rein Drenkhan (2023)
Oomycete Soil Diversity Associated with Betula and Alnus in Forests and Urban Settings in the Nordic–Baltic Region.
Journal of Fungi9: 926.
DOI: 10.3390/jof9090926
Min Jia, Yunxia Ni, Xintao Liu, Hui Zhao, Xinbei Zhao, Bipo He, Chunyan Zhang, Hongyan Liu (2023)
First Report of Root Rot Caused by Pythium myriotylum on Sesame in China.
Plant Disease107: 2558.
DOI: 10.1094/PDIS-10-22-2503-PDN
Jean Legeay, Claude Husson, Tristan Cordier, Corinne Vacher, Benoît Marcais, Marc Buée (2019)
Comparison and validation of Oomycetes metabarcoding primers for Phytophthora high throughput sequencing.
Journal of Plant Pathology101: 743.
DOI: 10.1007/s42161-019-00276-9
Zachary A. Noel, Hao-Xun Chang, Martin I. Chilvers (2020)
Variation in soybean rhizosphere oomycete communities from Michigan fields with contrasting disease pressures.
Applied Soil Ecology150: 103435.
DOI: 10.1016/j.apsoil.2019.103435
Sunil Nivrutti More, Oscar Hernandez, William L. Castleman (2019)
Mycotic Rhinitis and Sinusitis in Florida Horses.
Veterinary Pathology56: 586.
DOI: 10.1177/0300985818817046
Sandhya Takooree, Hudaa Neetoo, Vijayanti Ranghoo-Sanmukhiya, Vivian Vally, Aleksandra Bulajic, der van (2022)
A comparison of methods for the detection of Phytophthora infestans on potatoes in Mauritius.
Journal of Agricultural Sciences, Belgrade67: 203.
DOI: 10.2298/JAS2202203T
T. L. Pitman, R. N. Philbrook, J. G. Warren (2021)
First Report of Pythium myriotylum Causing Root Rot in Cannabis sativa in California.
Plant Disease105: 3766.
DOI: 10.1094/PDIS-02-21-0336-PDN
Robin-Tobias Jauss, Susanne Walden, Anna Maria Fiore-Donno, Stefan Schaffer, Ronny Wolf, Kai Feng, Michael Bonkowski, Martin Schlegel (2021)
A Parasite’s Paradise: Biotrophic Species Prevail Oomycete Community Composition in Tree Canopies.
Frontiers in Forests and Global Change4: .
DOI: 10.3389/ffgc.2021.668895
Paula Leoro-Garzon, Andrew J. Gonedes, Isabel E. Olivera, Aurélien Tartar (2019)
Oomycete metabarcoding reveals the presence of Lagenidium spp. in phytotelmata.
PeerJ7: e7903.
DOI: 10.7717/peerj.7903