Genomics and metagenomics technologies to recover ribosomal DNA and single-copy genes from old fruit-body and ectomycorrhiza specimens

Leho Tedersoo; Ingrid Liiv; Paula Ann Kivistik; Sten Anslan; Urmas Kõljalg; Mohammad Bahram

doi:10.3897/mycokeys.13.8140

Nalin N. Wijayawardene, Julia Pawłowska, Peter M. Letcher, Paul M. Kirk, Richard A. Humber, Arthur Schüßler, Marta Wrzosek, Anna Muszewska, Alicja Okrasińska, Łukasz Istel, Aleksandra Gęsiorska, Paul Mungai, Adebola Azeez Lateef, Kunhiraman C. Rajeshkumar, Rajshree V. Singh, Renate Radek, Grit Walther, Lysett Wagner, Christopher Walker, D. Siril A. Wijesundara, Moslem Papizadeh, Somayeh Dolatabadi, Belle D. Shenoy, Yuri S. Tokarev, Saisamorn Lumyong, Kevin D. Hyde (2018)
Notes for genera: basal clades of Fungi (including Aphelidiomycota, Basidiobolomycota, Blastocladiomycota, Calcarisporiellomycota, Caulochytriomycota, Chytridiomycota, Entomophthoromycota, Glomeromycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota, Mucoromycota, Neocallimastigomycota, Olpidiomycota, Rozellomycota and Zoopagomycota). Fungal Diversity 92: 43.

DOI: 10.1007/s13225-018-0409-5

(2019)
Full Issue PDF. Phytobiomes Journal 3: 82.

DOI: 10.1094/PBIOMES-3-2

Nalin N. Wijayawardene, Mohammad Bahram, Iván Sánchez-Castro, Dong-Qin Dai, Kahandawa G. S. U. Ariyawansa, Udeni Jayalal, Nakarin Suwannarach, Leho Tedersoo (2021)
Current Insight into Culture-Dependent and Culture-Independent Methods in Discovering Ascomycetous Taxa. Journal of Fungi 7: 703.

DOI: 10.3390/jof7090703

Alessandro Desirò, William R. Rimington, Alison Jacob, Natalie Vande Pol, Matthew E. Smith, James M. Trappe, Martin I. Bidartondo, Gregory Bonito (2017)
Multigene phylogeny of Endogonales, an early diverging lineage offungi associated with plants. IMA Fungus 8: 245.

DOI: 10.5598/imafungus.2017.08.02.03

Leho Tedersoo, Rein Drenkhan, Sten Anslan, Carmen Morales‐Rodriguez, Michelle Cleary (2019)
High‐throughput identification and diagnostics of pathogens and pests: Overview and practical recommendations. Molecular Ecology Resources 19: 47.

DOI: 10.1111/1755-0998.12959

Leho Tedersoo, Sten Anslan (2019)
Towards PacBio‐based pan‐eukaryote metabarcoding using full‐length ITS sequences. Environmental Microbiology Reports 11: 659.

DOI: 10.1111/1758-2229.12776

Leho Tedersoo, Mohammad Bahram, Rasmus Puusepp, R. Henrik Nilsson, Timothy Y. James (2017)
Novel soil-inhabiting clades fill gaps in the fungal tree of life. Microbiome 5: .

DOI: 10.1186/s40168-017-0259-5

Li-Wei Zhou, Tom W. May (2023)
Fungal taxonomy: current status and research agendas for the interdisciplinary and globalisation era. Mycology 14: 52.

DOI: 10.1080/21501203.2022.2103194

Carrie Andrew, Jeffrey Diez, Timothy Y. James, Håvard Kauserud (2019)
Fungarium specimens: a largely untapped source in global change biology and beyond. Philosophical Transactions of the Royal Society B: Biological Sciences 374: 20170392.

DOI: 10.1098/rstb.2017.0392

Leho Tedersoo, Björn Lindahl (2016)
Fungal identification biases in microbiome projects. Environmental Microbiology Reports 8: 774.

DOI: 10.1111/1758-2229.12438

Camille Truong, Alija B. Mujic, Rosanne Healy, Francisco Kuhar, Giuliana Furci, Daniela Torres, Tuula Niskanen, Pablo A. Sandoval‐Leiva, Natalia Fernández, Julio M. Escobar, Alicia Moretto, Götz Palfner, Donald Pfister, Eduardo Nouhra, Rachel Swenie, Marisol Sánchez‐García, P. Brandon Matheny, Matthew E. Smith (2017)
How to know the fungi: combining field inventories and DNA‐barcoding to document fungal diversity. New Phytologist 214: 913.

DOI: 10.1111/nph.14509

Kadri Runnel, Kessy Abarenkov, Ovidiu Copoț, Vladimir Mikryukov, Urmas Kõljalg, Irja Saar, Leho Tedersoo (2022)
DNA barcoding of fungal specimens using PacBio long‐read high‐throughput sequencing . Molecular Ecology Resources 22: 2871.

DOI: 10.1111/1755-0998.13663

Sergei Põlme, Mohammad Bahram, Urmas Kõljalg, Leho Tedersoo (2017)
Biogeography of Mycorrhizal Symbiosis. Chapter 16: 345.

DOI: 10.1007/978-3-319-56363-3_16

Rohit Sharma (2017)
Mycorrhiza - Function, Diversity, State of the Art. Chapter 7: 99.

DOI: 10.1007/978-3-319-53064-2_7

Leho Tedersoo, Matthew E. Smith (2017)
Biogeography of Mycorrhizal Symbiosis. Chapter 6: 125.

DOI: 10.1007/978-3-319-56363-3_6

Yaser Arafath, Aifa Fathima, Saqib Hassan, George Seghal Kiran, Joseph Selvin (2022)
Freshwater Mycology. : 151.

DOI: 10.1016/B978-0-323-91232-7.00007-6

Pankaj Bhatt, Divya Joshi, Nitin Kumar, Narendra Kumar (2019)
Mycorrhizosphere and Pedogenesis. Chapter 11: 181.

DOI: 10.1007/978-981-13-6480-8_11