Related articles by
Research Article
Other versions:
- ContentsContents
- Article InfoArticle Info
- CiteCite
- MetricsMetrics
- CommentComment
- RelatedRelated
- FigsFigs
- TabsTabs
- TaxaTaxa
- DataData
- RefsRefs
- CitedCited
- NanopubsNanopubs
Mycobiome analysis of asymptomatic and symptomatic Norway spruce trees naturally infected by the conifer pathogens Heterobasidion spp.. Environmental Microbiology Reports 10: 532.
DOI: 10.1111/1758-2229.12654
Unexpected high species diversity among European stalked puffballs – a contribution to the phylogeny and taxonomy of the genus Tulostoma (Agaricales). MycoKeys 21: 33.
DOI: 10.3897/mycokeys.21.12176
Perspectives of using Illumina MiSeq for identification of arbuscular mycorrhizal fungi. Vavilov Journal of Genetics and Breeding 24: 158.
DOI: 10.18699/VJ19.38-o
The Mycobiota of the Deep Sea: What Omics Can Offer. Life 10: 292.
DOI: 10.3390/life10110292
Fungal identification biases in microbiome projects. Environmental Microbiology Reports 8: 774.
DOI: 10.1111/1758-2229.12438
Multi-targeted metagenetic analysis of the influence of climate and environmental parameters on soil microbial communities along an elevational gradient. Scientific Reports 6: .
DOI: 10.1038/srep28257
Yeast culture collections in the twenty‐first century: new opportunities and challenges. Yeast 33: 243.
DOI: 10.1002/yea.3171
Influence of arbuscular mycorrhizal fungi on antimony phyto-uptake and compartmentation in vegetables cultivated in urban gardens. Chemosphere 191: 272.
DOI: 10.1016/j.chemosphere.2017.10.058
Community RNA-Seq: multi-kingdom responses to living versus decaying roots in soil. ISME Communications 1: .
DOI: 10.1038/s43705-021-00059-3
Simulated global warming affects endophytic bacterial and fungal communities of Antarctic pearlwort leaves and some bacterial isolates support plant growth at low temperatures. Scientific Reports 12: .
DOI: 10.1038/s41598-022-23582-2
High Fungal Diversity but Low Seasonal Dynamics and Ectomycorrhizal Abundance in a Mountain Beech Forest. Microbial Ecology 82: 243.
DOI: 10.1007/s00248-021-01736-5
Laboratory conditions can change the complexity and composition of the natural aquatic mycobiome on Alnus glutinosa leaf litter. Fungal Ecology 57-58: 101142.
DOI: 10.1016/j.funeco.2022.101142
Tree diversity and species identity effects on soil fungi, protists and animals are context dependent. The ISME Journal 10: 346.
DOI: 10.1038/ismej.2015.116
Arbuscular mycorrhizal fungi promote coexistence and niche divergence of sympatric palm species on a remote oceanic island. New Phytologist 217: 1254.
DOI: 10.1111/nph.14850
Distinct environmental variables drive the community composition of mycorrhizal and saprotrophic fungi at the alpine treeline ecotone. Fungal Ecology 27: 116.
DOI: 10.1016/j.funeco.2016.08.010
Microbial communities and main features of labneh Ambaris, a traditional Lebanese fermented goat milk product. Journal of Dairy Science 106: 868.
DOI: 10.3168/jds.2022-22275
Dynamics and Biodiversity of Bacterial and Yeast Communities during Fermentation of Cocoa Beans. Applied and Environmental Microbiology 84: .
DOI: 10.1128/AEM.01164-18
Contrasting latitudinal diversity and co-occurrence patterns of soil fungi and plants in forest ecosystems. Soil Biology and Biochemistry 131: 100.
DOI: 10.1016/j.soilbio.2019.01.001
Effects of operational taxonomic unit inference methods on soil microeukaryote community analysis using long‐read metabarcoding. Ecology and Evolution 12: .
DOI: 10.1002/ece3.8676
Phyllosphere Fungal Communities of Plum and Antifungal Activity of Indigenous Phenazine-Producing Pseudomonas synxantha Against Monilinia laxa. Frontiers in Microbiology 10: .
DOI: 10.3389/fmicb.2019.02287
Composition and Metabolic Functions of the Microbiome in Fermented Grain during Light-Flavor Baijiu Fermentation. Microorganisms 8: 1281.
DOI: 10.3390/microorganisms8091281
Response of Barley Plants to Drought Might Be Associated with the Recruiting of Soil-Borne Endophytes. Microorganisms 8: 1414.
DOI: 10.3390/microorganisms8091414
Antarctic Cryptoendolithic Fungal Communities Are Highly Adapted and Dominated by Lecanoromycetes and Dothideomycetes. Frontiers in Microbiology 9: .
DOI: 10.3389/fmicb.2018.01392
The structure and function of the global citrus rhizosphere microbiome. Nature Communications 9: .
DOI: 10.1038/s41467-018-07343-2
ITS1 amplicon sequencing of feline gut mycobiome of Malaysian local breeds using Nanopore Flongle. Archives of Microbiology 204: .
DOI: 10.1007/s00203-022-02929-3
MinION Sequencing of Yeast Mock Communities To Assess the Effect of Databases and ITS-LSU Markers on the Reliability of Metabarcoding Analysis. Microbiology Spectrum 11: .
DOI: 10.1128/spectrum.01052-22
Fungal Diversity Associated with Armadillidium Isopods: A Case Study in Central Park of Gwacheon, South Korea. Diversity 15: 533.
DOI: 10.3390/d15040533
Nitrogen addition alters ectomycorrhizal fungal communities and soil enzyme activities in a tropical montane forest. Fungal Ecology 27: 14.
DOI: 10.1016/j.funeco.2017.02.004
Persistence of plant-mediated microbial soil legacy effects in soil and inside roots. Nature Communications 12: .
DOI: 10.1038/s41467-021-25971-z
Soil inoculation alters the endosphere microbiome of chrysanthemum roots and leaves. Plant and Soil 455: 107.
DOI: 10.1007/s11104-020-04655-5
Fungal diversity living in the root and sporophore of the endemic Korean fern Mankyua chejuense. Fungal Ecology 50: 101038.
DOI: 10.1016/j.funeco.2020.101038
Zooplankton carcasses stimulate microbial turnover of allochthonous particulate organic matter. The ISME Journal 15: 1735.
DOI: 10.1038/s41396-020-00883-w
Consistent patterns of fungal communities within ant-plants across a large geographic range strongly suggest a multipartite mutualism. Mycological Progress 20: 681.
DOI: 10.1007/s11557-021-01690-z
A fine‐scale spatial analysis of fungal communities on tropical tree bark unveils the epiphytic rhizosphere in orchids. New Phytologist 231: 2002.
DOI: 10.1111/nph.17459
Analysis of the Fungal Community in Ziziphi Spinosae Semen through High-Throughput Sequencing. Toxins 10: 494.
DOI: 10.3390/toxins10120494
Evaluation of pre-treated healthcare wastes during COVID-19 pandemic reveals pathogenic microbiota, antibiotics residues, and antibiotic resistance genes against beta-lactams. Environmental Research 219: 115139.
DOI: 10.1016/j.envres.2022.115139
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?. IMA Fungus 11: .
DOI: 10.1186/s43008-020-00033-z
Yeast Biodiversity in Vineyard during Grape Ripening: Comparison between Culture Dependent and NGS Analysis. Processes 10: 901.
DOI: 10.3390/pr10050901
Combining morphological and metabarcoding approaches reveals the freshwater eukaryotic phytoplankton community. Environmental Sciences Europe 32: .
DOI: 10.1186/s12302-020-00321-w
Comparative Analysis of Fungal Diversity in Rhizospheric Soil from Wild and Reintroduced Magnolia sinica Estimated via High-Throughput Sequencing. Plants 9: 600.
DOI: 10.3390/plants9050600
Metabarcoding of fungal communities associated with bark beetles. Ecology and Evolution 6: 1590.
DOI: 10.1002/ece3.1925
Metabarcoding-based fungal diversity on coarse and fine particulate organic matter in a first-order stream in Nova Scotia, Canada. F1000Research 4: 1378.
DOI: 10.12688/f1000research.7359.1
Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding. Scientific Reports 6: .
DOI: 10.1038/srep26528
DNA Template Dilution Impacts Amplicon Sequencing-Based Estimates of Soil Fungal Diversity. Phytobiomes Journal 2: 100.
DOI: 10.1094/PBIOMES-09-17-0037-R
Co-occurring epiphytic orchids have specialized mycorrhizal fungal niches that are also linked to ontogeny. Mycorrhiza 33: 87.
DOI: 10.1007/s00572-022-01099-w
Community composition of arctic root-associated fungi mirrors host plant phylogeny. FEMS Microbiology Ecology 96: .
DOI: 10.1093/femsec/fiaa185
Rhizosheath microbial community assembly of sympatric desert speargrasses is independent of the plant host. Microbiome 6: .
DOI: 10.1186/s40168-018-0597-y
Coming of age for COI metabarcoding of whole organism community DNA: Towards bioinformatic harmonisation. Molecular Ecology Resources 22: 847.
DOI: 10.1111/1755-0998.13502
Declining fungal diversity in Arctic freshwaters along a permafrost thaw gradient. Global Change Biology 27: 5889.
DOI: 10.1111/gcb.15852
Seasonality of parasitic and saprotrophic zoosporic fungi: linking sequence data to ecological traits. The ISME Journal 16: 2242.
DOI: 10.1038/s41396-022-01267-y
The fungal composition of natural biofinishes on oil-treated wood. Fungal Biology and Biotechnology 4: .
DOI: 10.1186/s40694-017-0030-5
Strain-specific identification of Beauveria bassiana isolated from a novel habitat, using rDNA-based sequence analogy. Egyptian Journal of Biological Pest Control 28: .
DOI: 10.1186/s41938-018-0033-4
Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory. MycoKeys 26: 13.
DOI: 10.3897/mycokeys.26.14591
Comparison of the performance of ITS1 and ITS2 as barcodes in amplicon-based sequencing of bioaerosols. PeerJ 8: e8523.
DOI: 10.7717/peerj.8523
An optimised eDNA protocol for detecting fish in lentic and lotic freshwaters using a small water volume. PLOS ONE 14: e0219218.
DOI: 10.1371/journal.pone.0219218
High throughput screening of fungal phytopathogens caught in Australian forestry insect surveillance traps. Frontiers in Forests and Global Change 6: .
DOI: 10.3389/ffgc.2023.1149755
Exploring the taxonomic composition of two fungal communities on the Swedish west coast through metabarcoding. Biodiversity Data Journal 7: .
DOI: 10.3897/BDJ.7.e35332
Diversity and Abundance of Bacterial and Fungal Communities Inhabiting Camellia sinensis Leaf, Rhizospheric Soil, and Gut of Agriophara rhombata. Microorganisms 11: 2188.
DOI: 10.3390/microorganisms11092188
Litter species richness and composition effects on fungal richness and community structure in decomposing foliar and root litter. Soil Biology and Biochemistry 125: 328.
DOI: 10.1016/j.soilbio.2018.08.006
Intra‐ and inter‐cores fungal diversity suggests interconnection of different habitats in an Antarctic frozen lake (Boulder Clay, Northern Victoria Land). Environmental Microbiology 22: 3463.
DOI: 10.1111/1462-2920.15117
Characterizing the Human Mycobiota: A Comparison of Small Subunit rRNA, ITS1, ITS2, and Large Subunit rRNA Genomic Targets. Frontiers in Microbiology 9: .
DOI: 10.3389/fmicb.2018.02208
GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies. Scientific Data 7: .
DOI: 10.1038/s41597-020-0567-7
Soil fertility relates to fungal‐mediated decomposition and organic matter turnover in a temperate mountain forest. New Phytologist 231: 777.
DOI: 10.1111/nph.17421
RNA‐based analyses reveal fungal communities structured by a senescence gradient in the moss Dicranum scoparium and the presence of putative multi‐trophic fungi. New Phytologist 218: 1597.
DOI: 10.1111/nph.15092
Experimental warming alters potential function of the fungal community in boreal forest. Global Change Biology 22: 3395.
DOI: 10.1111/gcb.13238
Fungal Community Composition and Potential Depth-Related Driving Factors Impacting Distribution Pattern and Trophic Modes from Epi- to Abyssopelagic Zones of the Western Pacific Ocean. Microbial Ecology 78: 820.
DOI: 10.1007/s00248-019-01374-y
The Unusual Dominance of the Yeast Genus Glaciozyma in the Deeper Layer in an Antarctic Permafrost Core (Adélie Cove, Northern Victoria Land) Is Driven by Elemental Composition. Journal of Fungi 9: 435.
DOI: 10.3390/jof9040435
Assessment of the Accuracy of High-Throughput Sequencing of the ITS1 Region of Neocallimastigomycota for Community Composition Analysis. Frontiers in Microbiology 10: .
DOI: 10.3389/fmicb.2019.02370
Molecular phylogenetic assessment of the genus Scutellinia (Pezizales: Pyronemataceae). Plant Biosystems - An International Journal Dealing with all Aspects of Plant Biology 157: 188.
DOI: 10.1080/11263504.2022.2098869
Towards the Development of Microbial Ecotoxicology Testing Using Chlorpyrifos Contaminated Sediments and Marine Yeast Isolates as a Model. Microorganisms 10: 2019.
DOI: 10.3390/microorganisms10102019
High‐throughput identification and diagnostics of pathogens and pests: Overview and practical recommendations. Molecular Ecology Resources 19: 47.
DOI: 10.1111/1755-0998.12959
Root renovation: how an improved understanding of basic root biology could inform the development of elite crops that foster sustainable soil health. Functional Plant Biology 46: 597.
DOI: 10.1071/FP18200
Long‐read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments. Molecular Ecology Resources 18: 1500.
DOI: 10.1111/1755-0998.12937
Metaxa2 Diversity Tools: Easing microbial community analysis with Metaxa2. Ecological Informatics 33: 45.
DOI: 10.1016/j.ecoinf.2016.04.004
Fine‐scale spatial distribution of orchid mycorrhizal fungi in the soil of host‐rich grasslands. New Phytologist 213: 1428.
DOI: 10.1111/nph.14286
From microbial eukaryotes to metazoan vertebrates: Wide spectrum paleo‐diversity in sedimentary ancient DNA over the last ~14,500 years. Geobiology 16: 628.
DOI: 10.1111/gbi.12307
A possible unique ecosystem in the endoglacial hypersaline brines in Antarctica. Scientific Reports 13: .
DOI: 10.1038/s41598-022-27219-2
Soil microbial community structure and function mainly respond to indirect effects in a multifactorial climate manipulation experiment. Soil Biology and Biochemistry 142: 107704.
DOI: 10.1016/j.soilbio.2020.107704
Metabarcoding-based fungal diversity on coarse and fine particulate organic matter in a first-order stream in Nova Scotia, Canada. F1000Research 4: 1378.
DOI: 10.12688/f1000research.7359.2
Ectomycorrhizal fungal communities in high mountain conifer forests in central Mexico and their potential use in the assisted migration of Abies religiosa. Mycorrhiza 28: 509.
DOI: 10.1007/s00572-018-0841-0
Local-scale spatial structure and community composition of orchid mycorrhizal fungi in semi-natural grasslands. Mycorrhiza 27: 355.
DOI: 10.1007/s00572-016-0755-7
PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives. New Phytologist 217: 1370.
DOI: 10.1111/nph.14776
Towards understanding the abundance of non-pollen palynomorphs: A comparison of fossil algae, algal pigments and sedaDNA from temperate lake sediments. Review of Palaeobotany and Palynology 249: 9.
DOI: 10.1016/j.revpalbo.2017.11.001
Towards PacBio‐based pan‐eukaryote metabarcoding using full‐length ITS sequences. Environmental Microbiology Reports 11: 659.
DOI: 10.1111/1758-2229.12776
Comparison of qPCR and Metabarcoding Methods as Tools for the Detection of Airborne Inoculum of Forest Fungal Pathogens. Phytopathology® 111: 570.
DOI: 10.1094/PHYTO-02-20-0034-R
Soil microbial communities regulate the threshold effect of salinity stress on SOM decomposition in coastal salt marshes. Fundamental Research : .
DOI: 10.1016/j.fmre.2023.02.024
The mycobiota of faeces from the critically endangered kākāpō and associated nest litter. New Zealand Journal of Zoology : 1.
DOI: 10.1080/03014223.2023.2170428
Is it possible to understand a book missing a quarter of the letters? Unveiling the belowground species richness of grasslands. Agriculture, Ecosystems & Environment 324: 107683.
DOI: 10.1016/j.agee.2021.107683
Seasonal dynamics of mycoplankton in the Yellow Sea reflect the combined effect of riverine inputs and hydrographic conditions. Molecular Ecology 30: 3624.
DOI: 10.1111/mec.15986
Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis. Molecular Ecology 27: 313.
DOI: 10.1111/mec.14478
The Endophytic Mycobiome of European Ash and Sycamore Maple Leaves – Geographic Patterns, Host Specificity and Influence of Ash Dieback. Frontiers in Microbiology 9: .
DOI: 10.3389/fmicb.2018.02345
Not poles apart: Antarctic soil fungal communities show similarities to those of the distant Arctic. Ecology Letters 19: 528.
DOI: 10.1111/ele.12587
In depth search of the Sequence Read Archive database reveals global distribution of the emerging pathogenic fungus Scedosporium aurantiacum . Medical Mycology 60: .
DOI: 10.1093/mmy/myac019
Characterizing fungal communities in medicinal and edible Cassiae Semen using high-throughput sequencing. International Journal of Food Microbiology 319: 108496.
DOI: 10.1016/j.ijfoodmicro.2019.108496
Diversity and N2O Production Potential of Fungi in an Oceanic Oxygen Minimum Zone. Journal of Fungi 7: 218.
DOI: 10.3390/jof7030218
Fungal communities in groundwater springs along the volcanic zone of Iceland. Inland Waters 10: 418.
DOI: 10.1080/20442041.2019.1689065
High-Throughput DNA Metabarcoding of Stem Sections from Trees with Cavities Describes Fungal Communities Associated with Variable Wood Decay, Position on Stem and Tree Species. Forests 14: 1070.
DOI: 10.3390/f14061070
Rare or rarely detected? Ceraceosorus guamensis sp. nov.: a second described species of Ceraceosorales and the potential for underdetection of rare lineages with common sampling techniques. Antonie van Leeuwenhoek 109: 1127.
DOI: 10.1007/s10482-016-0715-4
The role of fungi in heterogeneous sediment microbial networks. Scientific Reports 9: .
DOI: 10.1038/s41598-019-43980-3
Novel ITS1 Fungal Primers for Characterization of the Mycobiome. mSphere 2: .
DOI: 10.1128/mSphere.00488-17
Mycobiome detection from a single subterranean gametophyte using metabarcoding techniques. Applications in Plant Sciences 10: .
DOI: 10.1002/aps3.11461
Diversity and co-occurrence network modularization of bacterial communities determine soil fertility and crop yields in arid fertigation agroecosystems. Biology and Fertility of Soils 57: 809.
DOI: 10.1007/s00374-021-01571-3
Molecular community analysis of arbuscular mycorrhizal fungi—Contributions of PCR primer and host plant selectivity to the detected community profiles. Pedobiologia 59: 179.
DOI: 10.1016/j.pedobi.2016.04.002
Mycorrhizal Fungi Associated With Juniper and Oak Seedlings Along a Disturbance Gradient in Central Mexico. Frontiers in Forests and Global Change 5: .
DOI: 10.3389/ffgc.2022.736664
Proteomics Analysis of Zygosaccharomyces mellis in Response to Sugar Stress. Processes 10: 1193.
DOI: 10.3390/pr10061193
Biases in the metabarcoding of plant pathogens using rust fungi as a model system. MicrobiologyOpen 8: .
DOI: 10.1002/mbo3.780
Comparative Analysis of the Microbial Community Structures Between Healthy and Anthracnose-Infected Strawberry Rhizosphere Soils Using Illumina Sequencing Technology in Yunnan Province, Southwest of China. Frontiers in Microbiology 13: .
DOI: 10.3389/fmicb.2022.881450
Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing. Applied and Environmental Microbiology 82: 7217.
DOI: 10.1128/AEM.02576-16
Termites host specific fungal communities that differ from those in their ambient environments. Fungal Ecology 48: 100991.
DOI: 10.1016/j.funeco.2020.100991
Evaluation of lake sedimentary ancient DNA metabarcoding to assess fungal biodiversity in Arctic paleoecosystems. Environmental DNA 4: 1150.
DOI: 10.1002/edn3.315
Low abundance of Archaeorhizomycetes among fungi in soil metatranscriptomes. Scientific Reports 6: .
DOI: 10.1038/srep38455
MetaGaAP: A Novel Pipeline to Estimate Community Composition and Abundance from Non-Model Sequence Data. Biology 6: 14.
DOI: 10.3390/biology6010014
Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas. PLOS ONE 11: e0142759.
DOI: 10.1371/journal.pone.0142759
Impact of Wood Age on Termite Microbial Assemblages. Applied and Environmental Microbiology 89: .
DOI: 10.1128/aem.00361-23
Understudied, underrepresented, and unknown: Methodological biases that limit detection of early diverging fungi from environmental samples. Molecular Ecology Resources 22: 1065.
DOI: 10.1111/1755-0998.13540
Evaluating the role of biotic and chemical components of plant-soil feedback of primary successional plants. Biology and Fertility of Soils 56: 345.
DOI: 10.1007/s00374-019-01425-z
Fungal diversity in deep-sea sediments from the Magellan seamounts as revealed by a metabarcoding approach targeting the ITS2 regions. Mycology 11: 214.
DOI: 10.1080/21501203.2020.1799878
Multiscale assemblage of an ectomycorrhizal fungal community: the influence of host functional traits and soil properties in a 10-ha miombo forest. FEMS Microbiology Ecology 92: fiw151.
DOI: 10.1093/femsec/fiw151
Fungal and Bacterial Diversity Patterns of Two Diversity Levels Retrieved From a Late Decaying Fagus sylvatica Under Two Temperature Regimes. Frontiers in Microbiology 11: .
DOI: 10.3389/fmicb.2020.548793
Toxic Cyanobacteria in Svalbard: Chemical Diversity of Microcystins Detected Using a Liquid Chromatography Mass Spectrometry Precursor Ion Screening Method. Toxins 10: 147.
DOI: 10.3390/toxins10040147
Human Mycobiome In Normobiosis And Dysbiosis States Characteristics And Analysis Methods. Postępy Mikrobiologii - Advancements of Microbiology 60: 31.
DOI: 10.21307/PM-2021.60.1.04
Nanopore sequencing of full rRNA operon improves resolution in mycobiome analysis and reveals high diversity in both human gut and environments. Molecular Ecology : .
DOI: 10.1111/mec.16534
Meta‐omics highlights the diversity, activity and adaptations of fungi in deep oceanic crust. Environmental Microbiology 22: 3950.
DOI: 10.1111/1462-2920.15181
Quantitative losses vs. qualitative stability of ectomycorrhizal community responses to 3 years of experimental summer drought in a beech–spruce forest. Global Change Biology 24: .
DOI: 10.1111/gcb.13957
Tree species identity and diversity drive fungal richness and community composition along an elevational gradient in a Mediterranean ecosystem. Mycorrhiza 28: 39.
DOI: 10.1007/s00572-017-0806-8
DNA metabarcoding of fungal communities in Heshouwu (Polygonum multiflorum Thunb.). Food Control 136: 108850.
DOI: 10.1016/j.foodcont.2022.108850
Effect of salinity on fungal diversity in the rhizosphere of the halophyte Avicennia germinans from a semi-arid mangrove. Fungal Ecology 42: 100855.
DOI: 10.1016/j.funeco.2019.07.009
From DNA sequences to microbial ecology: Wrangling NEON soil microbe data with the neonMicrobe R package. Ecosphere 12: .
DOI: 10.1002/ecs2.3842
A cost-effective and efficient strategy for Illumina sequencing of fungal communities: A case study of beech endophytes identified elevation as main explanatory factor for diversity and community composition. Fungal Ecology 20: 175.
DOI: 10.1016/j.funeco.2015.12.009
Next Generation Sequencing of Ancient Fungal Specimens: The Case of the Saccardo Mycological Herbarium. Frontiers in Ecology and Evolution 6: .
DOI: 10.3389/fevo.2018.00129
Do Aerial Nitrogen Depositions Affect Fungal and Bacterial Communities of Oak Leaves?. Frontiers in Microbiology 12: .
DOI: 10.3389/fmicb.2021.633535
Ultra-resolution Metagenomics: When Enough Is Not Enough. mSystems 6: .
DOI: 10.1128/mSystems.00881-21
Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota). MycoKeys 13: 21.
DOI: 10.3897/mycokeys.13.8579
Amplicon-Metagenomic Analysis of Fungi from Antarctic Terrestrial Habitats. Frontiers in Microbiology 8: .
DOI: 10.3389/fmicb.2017.02235
Metabarcoding a diverse arthropod mock community. Molecular Ecology Resources 19: 711.
DOI: 10.1111/1755-0998.13008
Peatland microbial community responses to plant functional group and drought are depth‐dependent. Molecular Ecology 30: 5119.
DOI: 10.1111/mec.16125
Successional dynamics of soil fungal diversity along a restoration chronosequence post‐coal mining. Restoration Ecology 28: 543.
DOI: 10.1111/rec.13112
Methods and approaches to advance soil macroecology. Global Ecology and Biogeography 29: 1674.
DOI: 10.1111/geb.13156
A Metataxonomic Analysis of Maple Sap Microbial Communities Reveals New Insights Into Maple Syrup Complexity. Frontiers in Systems Biology 2: .
DOI: 10.3389/fsysb.2022.893007
Opportunities and risks of biofertilization for leek production in urban areas: Influence on both fungal diversity and human bioaccessibility of inorganic pollutants. Science of The Total Environment 624: 1140.
DOI: 10.1016/j.scitotenv.2017.12.100
Identification and quantification of meat product ingredients by whole-genome metagenomics (All-Food-Seq). European Food Research and Technology 246: 193.
DOI: 10.1007/s00217-019-03404-y
Bioinformatics matters: The accuracy of plant and soil fungal community data is highly dependent on the metabarcoding pipeline. Fungal Ecology 41: 23.
DOI: 10.1016/j.funeco.2019.03.005
Impact of PVC microplastics on soil chemical and microbiological parameters. Environmental Research 229: 115891.
DOI: 10.1016/j.envres.2023.115891
Leaf endophytic fungus interacts with precipitation to alter belowground microbial communities in primary successional dunes. FEMS Microbiology Ecology 93: .
DOI: 10.1093/femsec/fix036
In Silico Study Suggesting the Bias of Primers Choice in the Molecular Identification of Fungal Aerosols. Journal of Fungi 7: 99.
DOI: 10.3390/jof7020099
Abiotic factors affecting the bacterial and fungal diversity of permafrost in a rock glacier in the Stelvio Pass (Italian Central Alps). Applied Soil Ecology 166: 104079.
DOI: 10.1016/j.apsoil.2021.104079
Soil fertility determines whether ectomycorrhizal fungi accelerate or decelerate decomposition in a temperate forest. New Phytologist 239: 325.
DOI: 10.1111/nph.18930
Plant invasion reconstructs soil microbial assembly and functionality in coastal salt marshes. Molecular Ecology 31: 4478.
DOI: 10.1111/mec.16600
The largely neglected ecological role of oceanic pelagic fungi. Trends in Ecology & Evolution 38: 870.
DOI: 10.1016/j.tree.2023.05.002
A native and an invasive dune grass share similar, patchily distributed, root-associated fungal communities. Fungal Ecology 23: 141.
DOI: 10.1016/j.funeco.2016.08.003
Steering root microbiomes of a commercial horticultural crop with plant-soil feedbacks. Applied Soil Ecology 150: 103468.
DOI: 10.1016/j.apsoil.2019.103468
The impact of the Fungus-Host-Microbiota interplay uponCandida albicansinfections: current knowledge and new perspectives. FEMS Microbiology Reviews 45: .
DOI: 10.1093/femsre/fuaa060
Microbial Diversity Associated with Gwell, a Traditional French Mesophilic Fermented Milk Inoculated with a Natural Starter. Microorganisms 8: 982.
DOI: 10.3390/microorganisms8070982
Phylogenetic and morphological analyses of the mycoparasitic genus Piptocephalis. Mycologia 111: 54.
DOI: 10.1080/00275514.2018.1538439
Intragenomic variation in nuclear ribosomal markers and its implication in species delimitation, identification and barcoding in fungi. Fungal Biology Reviews 42: 1.
DOI: 10.1016/j.fbr.2022.04.002
Morphologic and molecular data help adopting the insect-pathogenic nephridiophagids (Nephridiophagidae) among the early diverging fungal lineages, close to the Chytridiomycota. MycoKeys 25: 31.
DOI: 10.3897/mycokeys.25.12446
Spartina alterniflora invasions reduce soil fungal diversity and simplify co-occurrence networks in a salt marsh ecosystem. Science of The Total Environment 758: 143667.
DOI: 10.1016/j.scitotenv.2020.143667
Variations in fungal community structure along elevation gradients in contrasting Austrian Alpine ecosystems. Applied Soil Ecology 177: 104508.
DOI: 10.1016/j.apsoil.2022.104508
Comparison of the Rhizosphere Soil Microbial Community Structure and Diversity Between Powdery Mildew-Infected and Noninfected Strawberry Plants in a Greenhouse by High-Throughput Sequencing Technology. Current Microbiology 77: 1724.
DOI: 10.1007/s00284-020-01948-x
Metatranscriptomics as a tool to identify fungal species and subspecies in mixed communities – a proof of concept under laboratory conditions. IMA Fungus 10: .
DOI: 10.1186/s43008-019-0012-8
Fungal communities of submerged fine detritus from temperate peatland and stream habitats. Aquatic Microbial Ecology 86: 191.
DOI: 10.3354/ame01969
Comparative analysis of zooplankton diversity in freshwaters: What can we gain from metagenomic analysis?. Environmental DNA 4: 1250.
DOI: 10.1002/edn3.335
The effect of environmental parameters and fertilization practices on yield and soil microbial diversity in a Kenyan paddy rice field. Applied Soil Ecology 176: 104495.
DOI: 10.1016/j.apsoil.2022.104495
Recovery of Fungal Cells from Air Samples: a Tale of Loss and Gain. Applied and Environmental Microbiology 85: .
DOI: 10.1128/AEM.02941-18
Comparison and validation of Oomycetes metabarcoding primers for Phytophthora high throughput sequencing. Journal of Plant Pathology 101: 743.
DOI: 10.1007/s42161-019-00276-9
Seasonality and assembly of soil microbial communities in coastal salt marshes invaded by a perennial grass. Journal of Environmental Management 331: 117247.
DOI: 10.1016/j.jenvman.2023.117247
Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson’s disease patients. Genome Medicine 9: .
DOI: 10.1186/s13073-017-0428-y
Combining the 5.8S and ITS2 to improve classification of fungi. Methods in Ecology and Evolution 10: 1702.
DOI: 10.1111/2041-210X.13266
A Molecular Window into the Biology and Epidemiology of Pneumocystis spp. Clinical Microbiology Reviews 31: .
DOI: 10.1128/CMR.00009-18
Similarities and Differences among Soil Fungal Assemblages in Managed Forests and Formerly Managed Forest Reserves. Forests 12: 353.
DOI: 10.3390/f12030353
Comparative Analysis of Rhizospheric Fungi Using High-Throughput Sequencing between Wild, Ex Situ, and Reintroduced Pinus squamata, a Plant Species with Extremely Small Populations in Yunnan Province, China. Diversity 15: 868.
DOI: 10.3390/d15070868
Analysis of Microbiota Persistence in Quebec’s Terroir Cheese Using a Metabarcoding Approach. Microorganisms 10: 1381.
DOI: 10.3390/microorganisms10071381
High-throughput sequencing view on the magnitude of global fungal diversity. Fungal Diversity 114: 539.
DOI: 10.1007/s13225-021-00472-y
Metabarcoding of insect-associated fungal communities: a comparison of internal transcribed spacer (ITS) and large-subunit (LSU) rRNA markers. MycoKeys 88: 1.
DOI: 10.3897/mycokeys.88.77106
Metagenomics Approaches for the Detection and Surveillance of Emerging and Recurrent Plant Pathogens. Microorganisms 9: 188.
DOI: 10.3390/microorganisms9010188
A novel approach for tracing mycophagous small mammals and documenting their fungal diets. Botany 97: 475.
DOI: 10.1139/cjb-2018-0222
Top 50 most wanted fungi. MycoKeys 12: 29.
DOI: 10.3897/mycokeys.12.7553
Disentangling the structure and function of mycoplankton communities in the context of marine environmental heterogeneity. Science of The Total Environment 766: 142635.
DOI: 10.1016/j.scitotenv.2020.142635
Fungal aerosols at dairy farms using molecular and culture techniques. Science of The Total Environment 653: 253.
DOI: 10.1016/j.scitotenv.2018.10.345
Structure and function of the global topsoil microbiome. Nature 560: 233.
DOI: 10.1038/s41586-018-0386-6
A thin ice layer segregates two distinct fungal communities in Antarctic brines from Tarn Flat (Northern Victoria Land). Scientific Reports 8: .
DOI: 10.1038/s41598-018-25079-3
Assessment of Cu applications in two contrasting soils—effects on soil microbial activity and the fungal community structure. Ecotoxicology 27: 217.
DOI: 10.1007/s10646-017-1888-y
Selection of fungi by candidate cover crops. Applied Soil Ecology 103: 72.
DOI: 10.1016/j.apsoil.2016.03.016
Metagenomics reveals novel microbial signatures of farm exposures in house dust. Frontiers in Microbiology 14: .
DOI: 10.3389/fmicb.2023.1202194
Probing promise versus performance in longer read fungal metabarcoding. New Phytologist 217: 973.
DOI: 10.1111/nph.14883
Metataxonomic comparison between internal transcribed spacer and 26S ribosomal large subunit (LSU) rDNA gene. International Journal of Food Microbiology 290: 132.
DOI: 10.1016/j.ijfoodmicro.2018.10.010
Regional Diversity of Maritime Antarctic Soil Fungi and Predicted Responses of Guilds and Growth Forms to Climate Change. Frontiers in Microbiology 11: .
DOI: 10.3389/fmicb.2020.615659
Long‐ and short‐read metabarcoding technologies reveal similar spatiotemporal structures in fungal communities. Molecular Ecology Resources 21: 1833.
DOI: 10.1111/1755-0998.13387
High habitat-specificity in fungal communities in oligo-mesotrophic, temperate Lake Stechlin (North-East Germany). MycoKeys 16: 17.
DOI: 10.3897/mycokeys.16.9646
Biodiversity seen through the perspective of insects: 10 simple rules on methodological choices and experimental design for genomic studies. PeerJ 7: e6727.
DOI: 10.7717/peerj.6727
Distribution of the potential pathogenic Alternaria on plant leaves determines foliar fungal communities around the disease spot. Environmental Research 200: 111715.
DOI: 10.1016/j.envres.2021.111715
Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce. mSystems 6: .
DOI: 10.1128/mSystems.00884-20
Diverse fungal lineages in subtropical ponds are altered by sediment-bound copper. Fungal Ecology 34: 28.
DOI: 10.1016/j.funeco.2018.03.003
ITS2 metabarcoding analysis complements lichen mycobiome diversity data. Mycological Progress 17: 1049.
DOI: 10.1007/s11557-018-1415-4
Validation of a quantitative PCR based detection system for indoor mold exposure assessment in bioaerosols. Environmental Science: Processes & Impacts 20: 1454.
DOI: 10.1039/C8EM00253C
Metagenomic assessment of the global diversity and distribution of bacteria and fungi. Environmental Microbiology 23: 316.
DOI: 10.1111/1462-2920.15314
Effects of Lignocellulosic Amendments on Soil Physicochemical Properties and Fungal Communities at Two Sites in Benin. SSRN Electronic Journal : .
DOI: 10.2139/ssrn.3992254
AM fungal communities inhabiting the roots of submerged aquatic plant Lobelia dortmanna are diverse and include a high proportion of novel taxa. Mycorrhiza 26: 735.
DOI: 10.1007/s00572-016-0709-0
A next generation sequencing approach with a suitable bioinformatics workflow to study fungal diversity in bioaerosols released from two different types of composting plants. Science of The Total Environment 601-602: 1306.
DOI: 10.1016/j.scitotenv.2017.05.235
Antarctic Glacial Meltwater Impacts the Diversity of Fungal Parasites Associated With Benthic Diatoms in Shallow Coastal Zones. Frontiers in Microbiology 13: .
DOI: 10.3389/fmicb.2022.805694
Drought legacy effects on fine-root-associated fungal communities are modulated by root interactions between tree species. Frontiers in Forests and Global Change 6: .
DOI: 10.3389/ffgc.2023.1197791
Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes. FEMS Microbiology Reviews 40: 686.
DOI: 10.1093/femsre/fuw017
DNA-metabarcoding analyses of the grapevine wood fungal community in the Krasnodar Region and Crimea. Ecological genetics 20: 89.
DOI: 10.17816/ecogen106312
Towards revealing the global diversity and community assembly of soil eukaryotes. Ecology Letters 25: 65.
DOI: 10.1111/ele.13904
Soil fungal communities across land use types. iForest - Biogeosciences and Forestry 13: 548.
DOI: 10.3832/ifor3231-013
Fungal bioaerosols in biomethanization facilities. Journal of the Air & Waste Management Association 68: 1198.
DOI: 10.1080/10962247.2018.1492472
Plant community composition steers grassland vegetation via soil legacy effects. Ecology Letters 23: 973.
DOI: 10.1111/ele.13497
Tomato Cultivars With Variable Tolerances to Water Deficit Differentially Modulate the Composition and Interaction Patterns of Their Rhizosphere Microbial Communities. Frontiers in Plant Science 12: .
DOI: 10.3389/fpls.2021.688533
Fungal Diversity in Multiple Post-harvest Aged Red Pine Stumps and Their Potential Influence on Heterobasidion Root Rot in Managed Stands Across Minnesota. Frontiers in Fungal Biology 2: .
DOI: 10.3389/ffunb.2021.782181
Metatranscriptomics and metabarcoding reveal spatiotemporal shifts in fungal communities and their activities in Chinese coastal waters. Molecular Ecology 32: 2750.
DOI: 10.1111/mec.16905
Response to Comment on “Global diversity and geography of soil fungi”. Science 349: 936.
DOI: 10.1126/science.aaa5594
Biological soil crusts on agricultural soils of mesic regions promote microbial cross-kingdom co-occurrences and nutrient retention. Frontiers in Microbiology 14: .
DOI: 10.3389/fmicb.2023.1169958
Mitochondrial cytochrome c oxidase subunit I (COI) metabarcoding of Foraminifera communities using taxon-specific primers. PeerJ 10: e13952.
DOI: 10.7717/peerj.13952
Evaluation of detection probabilities at the water-filtering and initial PCR steps in environmental DNA metabarcoding using a multispecies site occupancy model. Scientific Reports 9: .
DOI: 10.1038/s41598-019-40233-1
Global Diversity and Biogeography of the Zostera marina Mycobiome . Applied and Environmental Microbiology 87: .
DOI: 10.1128/AEM.02795-20
Modular, multi‐barcode amplicon sequencing for improved species‐level detection of fungal phytopathogens: A case study of pipeline establishment targeting the Ophiostomatales. Environmental DNA : .
DOI: 10.1002/edn3.368
The differences and overlaps in the seed‐resident microbiome of four Leguminous and three Gramineous forages. Microbial Biotechnology 13: 1461.
DOI: 10.1111/1751-7915.13618
Above‐belowground linkages of functionally dissimilar plant communities and soil properties in a grassland experiment. Ecosphere 11: .
DOI: 10.1002/ecs2.3246
Persistent Bacterial and Fungal Community Shifts Exhibited in Selenium-Contaminated Reclaimed Mine Soils. Applied and Environmental Microbiology 84: .
DOI: 10.1128/AEM.01394-18
Time after Time: Temporal Variation in the Effects of Grass and Forb Species on Soil Bacterial and Fungal Communities. mBio 10: .
DOI: 10.1128/mBio.02635-19
Inter- and intraspecific plant-soil feedbacks of grass species. Plant and Soil 486: 575.
DOI: 10.1007/s11104-023-05893-z
LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis. Microbiome 10: .
DOI: 10.1186/s40168-022-01365-1
Vanilla aerial and terrestrial roots host rich communities of orchid mycorrhizal and ectomycorrhizal fungi. PLANTS, PEOPLE, PLANET 3: 541.
DOI: 10.1002/ppp3.10171
Habitat‐specific responses of soil organic matter decomposition to Spartina alterniflora invasion along China's coast. Ecological Applications : .
DOI: 10.1002/eap.2741
Mycobiome diversity: high-throughput sequencing and identification of fungi. Nature Reviews Microbiology 17: 95.
DOI: 10.1038/s41579-018-0116-y
Impacts of experimentally accelerated forest succession on belowground plant and fungal communities. Soil Biology and Biochemistry 125: 44.
DOI: 10.1016/j.soilbio.2018.06.022
Aquatic fungi: targeting the forgotten in microbial ecology. Current Opinion in Microbiology 31: 140.
DOI: 10.1016/j.mib.2016.03.016
Effect of LSU and ITS genetic markers and reference databases on analyses of fungal communities. Biology and Fertility of Soils 55: 79.
DOI: 10.1007/s00374-018-1331-4
Potential links between wood‐inhabiting and soil fungal communities: Evidence from high‐throughput sequencing. MicrobiologyOpen 8: .
DOI: 10.1002/mbo3.856
Microbial Diversity Using a Metataxonomic Approach, Associated with Coffee Fermentation Processes in the Department of Quindío, Colombia. Fermentation 9: 343.
DOI: 10.3390/fermentation9040343
Removal of soil biota alters soil feedback effects on plant growth and defense chemistry. New Phytologist 221: 1478.
DOI: 10.1111/nph.15485
A methodological framework to embrace soil biodiversity. Soil Biology and Biochemistry 136: 107536.
DOI: 10.1016/j.soilbio.2019.107536
High fungal substrate specificity limits the utility of environmental DNA to detect fungal diversity in bogs. Ecological Indicators 121: 107009.
DOI: 10.1016/j.ecolind.2020.107009
FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild. Fungal Ecology 20: 241.
DOI: 10.1016/j.funeco.2015.06.006
Metabarcoding targeting the EF1 alpha region to assess Fusarium diversity on cereals. PLOS ONE 14: e0207988.
DOI: 10.1371/journal.pone.0207988
Toward a Fully Resolved Fungal Tree of Life. Annual Review of Microbiology 74: 291.
DOI: 10.1146/annurev-micro-022020-051835
Nitrous oxide production and isotopomer composition by fungi isolated from salt marsh sediments. Frontiers in Marine Science 9: .
DOI: 10.3389/fmars.2022.1098508
Increased sequencing depth does not increase captured diversity of arbuscular mycorrhizal fungi. Mycorrhiza 27: 761.
DOI: 10.1007/s00572-017-0791-y
The legacy effect of cover crops on soil fungal populations in a cereal rotation. Agriculture, Ecosystems & Environment 228: 49.
DOI: 10.1016/j.agee.2016.04.022
Bacterial communities are more sensitive to ocean acidification than fungal communities in estuarine sediments. FEMS Microbiology Ecology 97: .
DOI: 10.1093/femsec/fiab058
Introducing ribosomal tandem repeat barcoding for fungi. Molecular Ecology Resources 19: 118.
DOI: 10.1111/1755-0998.12944
Inconsistent effects of agricultural practices on soil fungal communities across 12 European long‐term experiments. European Journal of Soil Science 72: 1902.
DOI: 10.1111/ejss.13090
Fungal diversity and seasonal succession in ash leaves infected by the invasive ascomycete Hymenoscyphus fraxineus. New Phytologist 213: 1405.
DOI: 10.1111/nph.14204
Different patterns in root and soil fungal diversity drive plant productivity of the desert truffle Terfezia claveryi in plantation. Environmental Microbiology 23: 5917.
DOI: 10.1111/1462-2920.15688
Community composition of aquatic fungi across the thawing Arctic. Scientific Data 8: .
DOI: 10.1038/s41597-021-01005-7
Best practices in metabarcoding of fungi: From experimental design to results. Molecular Ecology 31: 2769.
DOI: 10.1111/mec.16460
Optimization of DNA Extraction and PCR Conditions for Fungal Metagenome Analysis of Atmospheric Particulate Matter. Microbiology and Biotechnology Letters 51: 99.
DOI: 10.48022/mbl.2212.12010
Abiotic Stress and Belowground Microbiome: The Potential of Omics Approaches. International Journal of Molecular Sciences 23: 1091.
DOI: 10.3390/ijms23031091
Composition of Micro-eukaryotes on the Skin of the Cascades Frog (Rana cascadae) and Patterns of Correlation between Skin Microbes and Batrachochytrium dendrobatidis. Frontiers in Microbiology 8: .
DOI: 10.3389/fmicb.2017.02350
Assessment of the metabarcoding approach for community analysis of benthic-epiphytic dinoflagellates using mock communities. New Zealand Journal of Marine and Freshwater Research 51: 555.
DOI: 10.1080/00288330.2017.1298632
Residential bacteria and fungi identified by high-throughput sequencing and childhood respiratory health. Environmental Research 204: 112377.
DOI: 10.1016/j.envres.2021.112377
A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms. BMC Microbiology 18: .
DOI: 10.1186/s12866-018-1331-4
Assessing the causes and consequences of gut mycobiome variation in a wild population of the Seychelles warbler. Microbiome 10: .
DOI: 10.1186/s40168-022-01432-7
Fallopia japonica and Impatiens glandulifera are colonized by species-poor root-associated fungal communities but have minor impacts on soil properties in riparian habitats. Biological Invasions 25: 2199.
DOI: 10.1007/s10530-023-03034-2
Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing. Scientific Reports 7: .
DOI: 10.1038/s41598-017-06665-3
Global diversity and geography of planktonic marine fungi. Botanica Marina 63: 121.
DOI: 10.1515/bot-2018-0113
Analyzing Ash Leaf-Colonizing Fungal Communities for Their Biological Control of Hymenoscyphus fraxineus. Frontiers in Microbiology 11: .
DOI: 10.3389/fmicb.2020.590944
Mycobiome of Post-Agricultural Soils 20 Years after Application of Organic Substrates and Planting of Pine Seedlings. Forests 14: 36.
DOI: 10.3390/f14010036
Weeds Harbor an Impressive Diversity of Fungi, Which Offers Possibilities for Biocontrol. Applied and Environmental Microbiology 88: .
DOI: 10.1128/aem.02177-21
Ecological signals of arctic plant-microbe associations are consistent across eDNA and vegetation surveys. Metabarcoding and Metagenomics 7: .
DOI: 10.3897/mbmg.7.99979
Merging Fungal and Bacterial Community Profiles via an Internal Control. Microbial Ecology 82: 484.
DOI: 10.1007/s00248-020-01638-y
Genomics and metagenomics technologies to recover ribosomal DNA and single-copy genes from old fruit-body and ectomycorrhiza specimens. MycoKeys 13: 1.
DOI: 10.3897/mycokeys.13.8140
Outbreak-Causing Fungi: Pneumocystis jirovecii. Mycopathologia : .
DOI: 10.1007/s11046-019-00408-w
Targeted ITS1 sequencing unravels the mycodiversity of deep‐sea sediments from the Gulf of Mexico. Environmental Microbiology 21: 4046.
DOI: 10.1111/1462-2920.14754
Optimization of Protocol for Construction of Fungal ITS Amplicon Library for High-Throughput Illumina Sequencing to Study the Mycobiome of Aspen Leaves. Applied Sciences 12: 1136.
DOI: 10.3390/app12031136
Orchid epiphytes do not receive organic substances from living trees through fungi. Mycorrhiza 30: 697.
DOI: 10.1007/s00572-020-00980-w
Diversity and substrate-specificity of green algae and other micro-eukaryotes colonizing amphibian clutches in Germany, revealed by DNA metabarcoding. The Science of Nature 108: .
DOI: 10.1007/s00114-021-01734-0
Manganese uptake by red maples in response to mineral dissolution rates in soil. Biogeochemistry 155: 147.
DOI: 10.1007/s10533-021-00817-4
Bioaerosol Sampler Choice Should Consider Efficiency and Ability of Samplers To Cover Microbial Diversity. Applied and Environmental Microbiology 84: .
DOI: 10.1128/AEM.01589-18
The Mycobiome in Health and Disease: Emerging Concepts, Methodologies and Challenges. Mycopathologia : .
DOI: 10.1007/s11046-019-00413-z
The Diplodia Tip Blight Pathogen Sphaeropsis sapinea Is the Most Common Fungus in Scots Pines’ Mycobiome, Irrespective of Health Status—A Case Study from Germany. Journal of Fungi 7: 607.
DOI: 10.3390/jof7080607
Vermicompost addition influences symbiotic fungi communities associated with leek cultivated in metal-rich soils. Environmental Science and Pollution Research 26: 20040.
DOI: 10.1007/s11356-018-2803-7
Amplicon-Based Analysis of the Fungal Diversity across Four Kenyan Soda Lakes. Scientifica 2022: 1.
DOI: 10.1155/2022/9182034
Methods for identifying and measuring the diversity of ectomycorrhizal fungi. Forestry: An International Journal of Forest Research : .
DOI: 10.1093/forestry/cpad017
Archaeorhizomycetes Spatial Distribution in Soils Along Wide Elevational and Environmental Gradients Reveal Co-abundance Patterns With Other Fungal Saprobes and Potential Weathering Capacities. Frontiers in Microbiology 10: .
DOI: 10.3389/fmicb.2019.00656
Exploring the accuracy of amplicon‐based internal transcribed spacer markers for a fungal community. Molecular Ecology Resources 20: 170.
DOI: 10.1111/1755-0998.13097
Rapid and real-time identification of fungi up to species level with long amplicon nanopore sequencing from clinical samples. Biology Methods and Protocols 6: .
DOI: 10.1093/biomethods/bpaa026
Passive inactivation of Candida parapsilosis in model indoor bioaerosol study using the visible photocatalytic activity of synthesized nanocomposite. Chemical Papers 77: 3571.
DOI: 10.1007/s11696-023-02720-8
Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing. PLOS ONE 13: e0195345.
DOI: 10.1371/journal.pone.0195345
Full Issue PDF. Phytobiomes Journal 2: 51.
DOI: 10.1094/PBIOMES-2-2
Current Insight into Traditional and Modern Methods in Fungal Diversity Estimates. Journal of Fungi 8: 226.
DOI: 10.3390/jof8030226
Characterization of Nero Antico di Pretalucente Wine and Grape Fungal Microbiota: An Expression of Abruzzo Region Cultivar Heritage. Fermentation 9: 150.
DOI: 10.3390/fermentation9020150
eDNA metabarcoding vs metagenomics: an assessment of dietary competition in two estuarine pipefishes. Frontiers in Marine Science 10: .
DOI: 10.3389/fmars.2023.1116741
Using nanopore sequencing to identify fungi from clinical samples with high phylogenetic resolution. Scientific Reports 13: .
DOI: 10.1038/s41598-023-37016-0
Profiling Walnut Fungal Pathobiome Associated with Walnut Dieback Using Community-Targeted DNA Metabarcoding. Plants 12: 2383.
DOI: 10.3390/plants12122383
Long-Distance Dispersal of Fungi. Microbiology Spectrum 5: .
DOI: 10.1128/microbiolspec.FUNK-0047-2016
Highlighting patterns of fungal diversity and composition shaped by ocean currents using the East China Sea as a model. Molecular Ecology 27: 564.
DOI: 10.1111/mec.14440
From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes. Computational and Structural Biotechnology Journal 18: 1722.
DOI: 10.1016/j.csbj.2020.06.028
Soil mycobiome in sustainable agriculture. Frontiers in Microbiology 13: .
DOI: 10.3389/fmicb.2022.1033824
Assessment of the Microbiome and Potential Aflatoxin Associated With the Medicinal Herb Platycladus orientalis. Frontiers in Microbiology 11: .
DOI: 10.3389/fmicb.2020.582679
Fungal community dynamics across a forest–alpine ecotone. Molecular Ecology 30: 4926.
DOI: 10.1111/mec.16095
Selection and Experimental Evaluation of Universal Primers to Study the Fungal Microbiome of Higher Plants. Phytobiomes Journal 2: 225.
DOI: 10.1094/PBIOMES-02-18-0009-R
Full Issue PDF. Phytobiomes Journal 2: 181.
DOI: 10.1094/PBIOMES-2-4
Landscape-scale mapping of soil fungal distribution: proposing a new NGS-based approach. Scientific Reports 13: .
DOI: 10.1038/s41598-023-37538-7
A High-Level Fungal Diversity in the Intertidal Sediment of Chinese Seas Presents the Spatial Variation of Community Composition. Frontiers in Microbiology 7: .
DOI: 10.3389/fmicb.2016.02098
Root exudates and rhizosphere microbiomes jointly determine temporal shifts in plant‐soil feedbacks. Plant, Cell & Environment 46: 1885.
DOI: 10.1111/pce.14570
Diversity and specificity of orchid mycorrhizal fungi in a leafless epiphytic orchid, Dendrophylax lindenii and the potential role of fungi in shaping its fine-scale distribution. Frontiers in Ecology and Evolution 11: .
DOI: 10.3389/fevo.2023.1057940
Temporal changes in fungal communities associated with guts and appendages of Collembola as based on culturing and high-throughput sequencing. Soil Biology and Biochemistry 96: 152.
DOI: 10.1016/j.soilbio.2016.02.006
DNA extraction and amplicon production strategies deeply inf luence the outcome of gut mycobiome studies. Scientific Reports 9: .
DOI: 10.1038/s41598-019-44974-x
DNA metabarcoding uncovers fungal diversity of mixed airborne samples in Italy. PLOS ONE 13: e0194489.
DOI: 10.1371/journal.pone.0194489
Ectomycorrhizal fungi and soil enzymes exhibit contrasting patterns along elevation gradients in southern Patagonia. New Phytologist 222: 1936.
DOI: 10.1111/nph.15714
Foliar-feeding insects acquire microbiomes from the soil rather than the host plant. Nature Communications 10: .
DOI: 10.1038/s41467-019-09284-w
Evolution of Fungi and Fungal-Like Organisms. Chapter 10: 227.
DOI: 10.1007/978-3-031-29199-9_10
Encyclopedia of Mycology. : 73.
DOI: 10.1016/B978-0-12-809633-8.21045-5
Plant Microbiome for Plant Productivity and Sustainable Agriculture. Chapter 1: 1.
DOI: 10.1007/978-981-19-5029-2_1
Molecular Mycorrhizal Symbiosis. : 299.
DOI: 10.1002/9781118951446.ch17
Biogeography of Mycorrhizal Symbiosis. Chapter 6: 125.
DOI: 10.1007/978-3-319-56363-3_6
Encyclopedia of Mycology. : 1.
DOI: 10.1016/B978-0-12-819990-9.00030-5
Forest Microbiology. : 35.
DOI: 10.1016/B978-0-12-822542-4.00016-4
Myxomycetes. : 125.
DOI: 10.1016/B978-0-12-824281-0.00007-5
Forest Microbiology. : 395.
DOI: 10.1016/B978-0-12-822542-4.00002-4
Forest Microbiology. : 385.
DOI: 10.1016/B978-0-12-822542-4.00015-2
Plant Mycobiome. Chapter 4: 63.
DOI: 10.1007/978-3-031-28307-9_4
Molecular Mycorrhizal Symbiosis. : 323.
DOI: 10.1002/9781118951446.ch18
Yeasts in Natural Ecosystems: Ecology. Chapter 6: 155.
DOI: 10.1007/978-3-319-61575-2_6
Yeasts in Natural Ecosystems: Diversity. Chapter 6: 171.
DOI: 10.1007/978-3-319-62683-3_6
Biogeography of Mycorrhizal Symbiosis. Chapter 10: 195.
DOI: 10.1007/978-3-319-56363-3_10
Encyclopedia of the World's Biomes. : 612.
DOI: 10.1016/B978-0-12-409548-9.12004-4
The Fungal Community. : 1.
DOI: 10.1201/9781315119496-2
The Fungal Kingdom. : 309.
DOI: 10.1128/9781555819583.ch14
Encyclopedia of Inland Waters. : 385.
DOI: 10.1016/B978-0-12-819166-8.00032-3
Biogeography of Mycorrhizal Symbiosis. Chapter 18: 395.
DOI: 10.1007/978-3-319-56363-3_18
Subscribe to email alerts for current Article's categories