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Response of Barley Plants to Drought Might Be Associated with the Recruiting of Soil-Borne Endophytes. Microorganisms 8: 1414. DOI: 10.3390/microorganisms8091414
Antarctic Cryptoendolithic Fungal Communities Are Highly Adapted and Dominated by Lecanoromycetes and Dothideomycetes. Frontiers in Microbiology 9: . DOI: 10.3389/fmicb.2018.01392
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Morphologic and molecular data help adopting the insect-pathogenic nephridiophagids (Nephridiophagidae) among the early diverging fungal lineages, close to the Chytridiomycota. MycoKeys 25: 31. DOI: 10.3897/mycokeys.25.12446
Spartina alterniflora invasions reduce soil fungal diversity and simplify co-occurrence networks in a salt marsh ecosystem. Science of The Total Environment 758: 143667. DOI: 10.1016/j.scitotenv.2020.143667
Variations in fungal community structure along elevation gradients in contrasting Austrian Alpine ecosystems. Applied Soil Ecology 177: 104508. DOI: 10.1016/j.apsoil.2022.104508
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Fungal communities of submerged fine detritus from temperate peatland and stream habitats. Aquatic Microbial Ecology 86: 191. DOI: 10.3354/ame01969
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Recovery of Fungal Cells from Air Samples: a Tale of Loss and Gain. Applied and Environmental Microbiology 85: . DOI: 10.1128/AEM.02941-18
Comparison and validation of Oomycetes metabarcoding primers for Phytophthora high throughput sequencing. Journal of Plant Pathology 101: 743. DOI: 10.1007/s42161-019-00276-9
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Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson’s disease patients. Genome Medicine 9: . DOI: 10.1186/s13073-017-0428-y
Combining the 5.8S and ITS2 to improve classification of fungi. Methods in Ecology and Evolution 10: 1702. DOI: 10.1111/2041-210X.13266
Elevated Fungicide and Nutrient Concentrations Change Structure but not Function of Aquatic Microbial Communities. Environmental Toxicology and Chemistry 43: 1300. DOI: 10.1002/etc.5863
A Molecular Window into the Biology and Epidemiology of Pneumocystis spp. Clinical Microbiology Reviews 31: . DOI: 10.1128/CMR.00009-18
Similarities and Differences among Soil Fungal Assemblages in Managed Forests and Formerly Managed Forest Reserves. Forests 12: 353. DOI: 10.3390/f12030353
Comparative Analysis of Rhizospheric Fungi Using High-Throughput Sequencing between Wild, Ex Situ, and Reintroduced Pinus squamata, a Plant Species with Extremely Small Populations in Yunnan Province, China. Diversity 15: 868. DOI: 10.3390/d15070868
Analysis of Microbiota Persistence in Quebec’s Terroir Cheese Using a Metabarcoding Approach. Microorganisms 10: 1381. DOI: 10.3390/microorganisms10071381
High-throughput sequencing view on the magnitude of global fungal diversity. Fungal Diversity 114: 539. DOI: 10.1007/s13225-021-00472-y
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Seasonal and Spatial Dynamics of Fungal Diversity and Communities in the Intertidal Zones of Qingdao, China. Journal of Fungi 9: 1015. DOI: 10.3390/jof9101015
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Chytrid fungi infecting Arctic microphytobenthic communities under varying salinity conditions. Scientific Reports 14: . DOI: 10.1038/s41598-024-77202-2
Top 50 most wanted fungi. MycoKeys 12: 29. DOI: 10.3897/mycokeys.12.7553
Disentangling the structure and function of mycoplankton communities in the context of marine environmental heterogeneity. Science of The Total Environment 766: 142635. DOI: 10.1016/j.scitotenv.2020.142635
Mycorrhizal driven positive feedbacks and forest resilience to reduced rainfall. Fungal Ecology 65: 101280. DOI: 10.1016/j.funeco.2023.101280
Fungal aerosols at dairy farms using molecular and culture techniques. Science of The Total Environment 653: 253. DOI: 10.1016/j.scitotenv.2018.10.345
Structure and function of the global topsoil microbiome. Nature 560: 233. DOI: 10.1038/s41586-018-0386-6
A thin ice layer segregates two distinct fungal communities in Antarctic brines from Tarn Flat (Northern Victoria Land). Scientific Reports 8: . DOI: 10.1038/s41598-018-25079-3
Assessment of Cu applications in two contrasting soils—effects on soil microbial activity and the fungal community structure. Ecotoxicology 27: 217. DOI: 10.1007/s10646-017-1888-y
Selection of fungi by candidate cover crops. Applied Soil Ecology 103: 72. DOI: 10.1016/j.apsoil.2016.03.016
Metagenomics reveals novel microbial signatures of farm exposures in house dust. Frontiers in Microbiology 14: . DOI: 10.3389/fmicb.2023.1202194
Probing promise versus performance in longer read fungal metabarcoding. New Phytologist 217: 973. DOI: 10.1111/nph.14883
Metataxonomic comparison between internal transcribed spacer and 26S ribosomal large subunit (LSU) rDNA gene. International Journal of Food Microbiology 290: 132. DOI: 10.1016/j.ijfoodmicro.2018.10.010
Regional Diversity of Maritime Antarctic Soil Fungi and Predicted Responses of Guilds and Growth Forms to Climate Change. Frontiers in Microbiology 11: . DOI: 10.3389/fmicb.2020.615659
Long‐ and short‐read metabarcoding technologies reveal similar spatiotemporal structures in fungal communities. Molecular Ecology Resources 21: 1833. DOI: 10.1111/1755-0998.13387
High habitat-specificity in fungal communities in oligo-mesotrophic, temperate Lake Stechlin (North-East Germany). MycoKeys 16: 17. DOI: 10.3897/mycokeys.16.9646
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Fungal diversity in homes and asthma morbidity among school-age children in New York City. Environmental Research 239: 117296. DOI: 10.1016/j.envres.2023.117296
Comparative analysis of the microbiomes of strawberry wild species Fragaria nilgerrensis and cultivated variety Akihime using amplicon-based next-generation sequencing. Frontiers in Microbiology 15: . DOI: 10.3389/fmicb.2024.1377782
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Drought acclimation of beech seedlings depends largely on their rooting patterns and less on the fungal communities in soils. Plant and Soil : . DOI: 10.1007/s11104-024-06784-7
Diverse fungal lineages in subtropical ponds are altered by sediment-bound copper. Fungal Ecology 34: 28. DOI: 10.1016/j.funeco.2018.03.003
ITS2 metabarcoding analysis complements lichen mycobiome diversity data. Mycological Progress 17: 1049. DOI: 10.1007/s11557-018-1415-4
Cold adapted and closely related mucoraceae species colonise dry-aged beef (DAB). Fungal Biology 127: 1397. DOI: 10.1016/j.funbio.2023.09.005
Validation of a quantitative PCR based detection system for indoor mold exposure assessment in bioaerosols. Environmental Science: Processes & Impacts 20: 1454. DOI: 10.1039/C8EM00253C
Metagenomic assessment of the global diversity and distribution of bacteria and fungi. Environmental Microbiology 23: 316. DOI: 10.1111/1462-2920.15314
Diversity of soil fungi from sacred groves of Kerala, India revealed by comparative metagenomics analysis using illumina sequencing. 3 Biotech 14: . DOI: 10.1007/s13205-024-03932-9
Effects of Lignocellulosic Amendments on Soil Physicochemical Properties and Fungal Communities at Two Sites in Benin. SSRN Electronic Journal : . DOI: 10.2139/ssrn.3992254
AM fungal communities inhabiting the roots of submerged aquatic plant Lobelia dortmanna are diverse and include a high proportion of novel taxa. Mycorrhiza 26: 735. DOI: 10.1007/s00572-016-0709-0
A next generation sequencing approach with a suitable bioinformatics workflow to study fungal diversity in bioaerosols released from two different types of composting plants. Science of The Total Environment 601-602: 1306. DOI: 10.1016/j.scitotenv.2017.05.235
Antarctic Glacial Meltwater Impacts the Diversity of Fungal Parasites Associated With Benthic Diatoms in Shallow Coastal Zones. Frontiers in Microbiology 13: . DOI: 10.3389/fmicb.2022.805694
Phylogenomics including new sequence data of phytoplankton-infecting chytrids reveals multiple independent lifestyle transitions across the phylum. Molecular Phylogenetics and Evolution 197: 108103. DOI: 10.1016/j.ympev.2024.108103
Drought legacy effects on fine-root-associated fungal communities are modulated by root interactions between tree species. Frontiers in Forests and Global Change 6: . DOI: 10.3389/ffgc.2023.1197791
Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes. FEMS Microbiology Reviews 40: 686. DOI: 10.1093/femsre/fuw017
DNA-metabarcoding analyses of the grapevine wood fungal community in the Krasnodar Region and Crimea. Ecological genetics 20: 89. DOI: 10.17816/ecogen106312
Towards revealing the global diversity and community assembly of soil eukaryotes. Ecology Letters 25: 65. DOI: 10.1111/ele.13904
Impact of soil inoculation on crop residue breakdown and carbon and nitrogen cycling in organically and conventionally managed agricultural soils. Applied Soil Ecology 205: 105760. DOI: 10.1016/j.apsoil.2024.105760
Soil fungal communities across land use types. iForest - Biogeosciences and Forestry 13: 548. DOI: 10.3832/ifor3231-013
Fungal bioaerosols in biomethanization facilities. Journal of the Air & Waste Management Association 68: 1198. DOI: 10.1080/10962247.2018.1492472
Plant community composition steers grassland vegetation via soil legacy effects. Ecology Letters 23: 973. DOI: 10.1111/ele.13497
Ectomycorrhizal fungi and the nitrogen economy of Nothofagus in southern Patagonia. Ecology and Evolution 14: . DOI: 10.1002/ece3.70299
Tomato Cultivars With Variable Tolerances to Water Deficit Differentially Modulate the Composition and Interaction Patterns of Their Rhizosphere Microbial Communities. Frontiers in Plant Science 12: . DOI: 10.3389/fpls.2021.688533
Fungal Diversity in Multiple Post-harvest Aged Red Pine Stumps and Their Potential Influence on Heterobasidion Root Rot in Managed Stands Across Minnesota. Frontiers in Fungal Biology 2: . DOI: 10.3389/ffunb.2021.782181
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Response to Comment on “Global diversity and geography of soil fungi”. Science 349: 936. DOI: 10.1126/science.aaa5594
Biological soil crusts on agricultural soils of mesic regions promote microbial cross-kingdom co-occurrences and nutrient retention. Frontiers in Microbiology 14: . DOI: 10.3389/fmicb.2023.1169958
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The differences and overlaps in the seed‐resident microbiome of four Leguminous and three Gramineous forages. Microbial Biotechnology 13: 1461. DOI: 10.1111/1751-7915.13618
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Persistent Bacterial and Fungal Community Shifts Exhibited in Selenium-Contaminated Reclaimed Mine Soils. Applied and Environmental Microbiology 84: . DOI: 10.1128/AEM.01394-18
Time after Time: Temporal Variation in the Effects of Grass and Forb Species on Soil Bacterial and Fungal Communities. mBio 10: . DOI: 10.1128/mBio.02635-19
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Microbial Diversity Using a Metataxonomic Approach, Associated with Coffee Fermentation Processes in the Department of Quindío, Colombia. Fermentation 9: 343. DOI: 10.3390/fermentation9040343
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Insight into planktonic protistan and fungal communities across the nutrient-depleted environment of the South Pacific Subtropical Gyre. Microbiology Spectrum 12: . DOI: 10.1128/spectrum.03016-23
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Metabarcoding targeting the EF1 alpha region to assess Fusarium diversity on cereals. PLOS ONE 14: e0207988. DOI: 10.1371/journal.pone.0207988
Toward a Fully Resolved Fungal Tree of Life. Annual Review of Microbiology 74: 291. DOI: 10.1146/annurev-micro-022020-051835
Nitrous oxide production and isotopomer composition by fungi isolated from salt marsh sediments. Frontiers in Marine Science 9: . DOI: 10.3389/fmars.2022.1098508
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The legacy effect of cover crops on soil fungal populations in a cereal rotation. Agriculture, Ecosystems & Environment 228: 49. DOI: 10.1016/j.agee.2016.04.022
Bacterial communities are more sensitive to ocean acidification than fungal communities in estuarine sediments. FEMS Microbiology Ecology 97: . DOI: 10.1093/femsec/fiab058
Introducing ribosomal tandem repeat barcoding for fungi. Molecular Ecology Resources 19: 118. DOI: 10.1111/1755-0998.12944
Inconsistent effects of agricultural practices on soil fungal communities across 12 European long‐term experiments. European Journal of Soil Science 72: 1902. DOI: 10.1111/ejss.13090
Fungal diversity and seasonal succession in ash leaves infected by the invasive ascomycete Hymenoscyphus fraxineus. New Phytologist 213: 1405. DOI: 10.1111/nph.14204
Different patterns in root and soil fungal diversity drive plant productivity of the desert truffleTerfezia claveryiin plantation. Environmental Microbiology 23: 5917. DOI: 10.1111/1462-2920.15688
Community composition of aquatic fungi across the thawing Arctic. Scientific Data 8: . DOI: 10.1038/s41597-021-01005-7
Best practices in metabarcoding of fungi: From experimental design to results. Molecular Ecology 31: 2769. DOI: 10.1111/mec.16460
Optimization of DNA Extraction and PCR Conditions for Fungal Metagenome Analysis of Atmospheric Particulate Matter. Microbiology and Biotechnology Letters 51: 99. DOI: 10.48022/mbl.2212.12010
Abiotic Stress and Belowground Microbiome: The Potential of Omics Approaches. International Journal of Molecular Sciences 23: 1091. DOI: 10.3390/ijms23031091
Microbial landscapes in Trinervitermes trinervoides termite colonies are affected by mound compartments and soil properties but not by symbiotic Podaxis fungi. Science of The Total Environment 957: 177015. DOI: 10.1016/j.scitotenv.2024.177015
Composition of Micro-eukaryotes on the Skin of the Cascades Frog (Rana cascadae) and Patterns of Correlation between Skin Microbes and Batrachochytrium dendrobatidis. Frontiers in Microbiology 8: . DOI: 10.3389/fmicb.2017.02350
Assessment of the metabarcoding approach for community analysis of benthic-epiphytic dinoflagellates using mock communities. New Zealand Journal of Marine and Freshwater Research 51: 555. DOI: 10.1080/00288330.2017.1298632
Microbial populations, sensory, and volatile compounds profiling of local cooked rice. Food Quality and Safety 8: . DOI: 10.1093/fqsafe/fyad065
Residential bacteria and fungi identified by high-throughput sequencing and childhood respiratory health. Environmental Research 204: 112377. DOI: 10.1016/j.envres.2021.112377
Combining Air Sampling and DNA Metabarcoding to Monitor Plant Pathogens. PhytoFrontiers™ 3: 639. DOI: 10.1094/PHYTOFR-10-22-0108-R
A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms. BMC Microbiology 18: . DOI: 10.1186/s12866-018-1331-4
Assessing the causes and consequences of gut mycobiome variation in a wild population of the Seychelles warbler. Microbiome 10: . DOI: 10.1186/s40168-022-01432-7
Dynamics and drivers of fungal communities in a multipartite ant-plant association. BMC Biology 22: . DOI: 10.1186/s12915-024-01897-y
Fallopia japonica and Impatiens glandulifera are colonized by species-poor root-associated fungal communities but have minor impacts on soil properties in riparian habitats. Biological Invasions 25: 2199. DOI: 10.1007/s10530-023-03034-2
Sterile sentinels and MinION sequencing capture active soil microbial communities that differentiate crop rotations. Environmental Microbiome 19: . DOI: 10.1186/s40793-024-00571-8
Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing. Scientific Reports 7: . DOI: 10.1038/s41598-017-06665-3
Global diversity and geography of planktonic marine fungi. Botanica Marina 63: 121. DOI: 10.1515/bot-2018-0113
Analyzing Ash Leaf-Colonizing Fungal Communities for Their Biological Control of Hymenoscyphus fraxineus. Frontiers in Microbiology 11: . DOI: 10.3389/fmicb.2020.590944
Mycobiome of Post-Agricultural Soils 20 Years after Application of Organic Substrates and Planting of Pine Seedlings. Forests 14: 36. DOI: 10.3390/f14010036
Weeds Harbor an Impressive Diversity of Fungi, Which Offers Possibilities for Biocontrol. Applied and Environmental Microbiology 88: . DOI: 10.1128/aem.02177-21
Ecological signals of arctic plant-microbe associations are consistent across eDNA and vegetation surveys. Metabarcoding and Metagenomics 7: . DOI: 10.3897/mbmg.7.99979
New generation sequencing: molecular approaches for the detection and monitoring of bioaerosols in an indoor environment: a systematic review. Reviews on Environmental Health : . DOI: 10.1515/reveh-2023-0004
Merging Fungal and Bacterial Community Profiles via an Internal Control. Microbial Ecology 82: 484. DOI: 10.1007/s00248-020-01638-y
The hidden network of biocrust successional stages in the High Arctic: Revealing abiotic and biotic factors shaping microbial and metazoan communities. Science of The Total Environment 926: 171786. DOI: 10.1016/j.scitotenv.2024.171786
Variations in the root mycobiome and mycorrhizal fungi between different types of Vanilla forest farms on Réunion Island. Mycorrhiza 34: 429. DOI: 10.1007/s00572-024-01171-7
Genomics and metagenomics technologies to recover ribosomal DNA and single-copy genes from old fruit-body and ectomycorrhiza specimens. MycoKeys 13: 1. DOI: 10.3897/mycokeys.13.8140
Outbreak-Causing Fungi: Pneumocystis jirovecii. Mycopathologia : . DOI: 10.1007/s11046-019-00408-w
Targeted ITS1 sequencing unravels the mycodiversity of deep‐sea sediments from the Gulf of Mexico. Environmental Microbiology 21: 4046. DOI: 10.1111/1462-2920.14754
Enhancing ascitic fungal infection diagnosis through next-generation sequencing: a pilot study in surgical ICU patients. Frontiers in Cellular and Infection Microbiology 14: . DOI: 10.3389/fcimb.2024.1441805
Optimization of Protocol for Construction of Fungal ITS Amplicon Library for High-Throughput Illumina Sequencing to Study the Mycobiome of Aspen Leaves. Applied Sciences 12: 1136. DOI: 10.3390/app12031136
Orchid epiphytes do not receive organic substances from living trees through fungi. Mycorrhiza 30: 697. DOI: 10.1007/s00572-020-00980-w
Efficiently recording and processing data from arbuscular mycorrhizal colonization assays using AMScorer and AMReader. Frontiers in Plant Science 15: . DOI: 10.3389/fpls.2024.1405598
Diversity and substrate-specificity of green algae and other micro-eukaryotes colonizing amphibian clutches in Germany, revealed by DNA metabarcoding. The Science of Nature 108: . DOI: 10.1007/s00114-021-01734-0
Manganese uptake by red maples in response to mineral dissolution rates in soil. Biogeochemistry 155: 147. DOI: 10.1007/s10533-021-00817-4
Bioaerosol Sampler Choice Should Consider Efficiency and Ability of Samplers To Cover Microbial Diversity. Applied and Environmental Microbiology 84: . DOI: 10.1128/AEM.01589-18
The Mycobiome in Health and Disease: Emerging Concepts, Methodologies and Challenges. Mycopathologia : . DOI: 10.1007/s11046-019-00413-z
The Diplodia Tip Blight Pathogen Sphaeropsis sapinea Is the Most Common Fungus in Scots Pines’ Mycobiome, Irrespective of Health Status—A Case Study from Germany. Journal of Fungi 7: 607. DOI: 10.3390/jof7080607
Vermicompost addition influences symbiotic fungi communities associated with leek cultivated in metal-rich soils. Environmental Science and Pollution Research 26: 20040. DOI: 10.1007/s11356-018-2803-7
Amplicon-Based Analysis of the Fungal Diversity across Four Kenyan Soda Lakes. Scientifica 2022: 1. DOI: 10.1155/2022/9182034
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